RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 ZNF214Q9UL59 606 aaPredicted RBP8.6□□□□□ -1.03
USP54-208ENST00000461520 SYNPO2Q9UMS6 1093 aa8.6□□□□□ -1.03
USP54-208ENST00000461520 SMG5Q9UPR3 1016 aaKnown RBP8.6□□□□□ -1.03
USP54-208ENST00000461520 STXBP5LQ9Y2K9 1186 aa8.6□□□□□ -1.03
USP54-208ENST00000461520 PCDHB12Q9Y5F1 795 aa8.6□□□□□ -1.03
USP54-208ENST00000461520 UNC80Q8N2C7 3258 aa8.6□□□□□ -1.03
USP54-208ENST00000461520 TCAF2A6NFQ2 919 aa8.59□□□□□ -1.03
USP54-208ENST00000461520 NDUFB10O96000 172 aa8.59□□□□□ -1.03
USP54-208ENST00000461520 SLC3A2P08195 630 aaKnown RBP8.59□□□□□ -1.03
USP54-208ENST00000461520 MED14OSP0DP75 135 aa8.59□□□□□ -1.03
USP54-208ENST00000461520 MX1P20591 662 aa8.59□□□□□ -1.03
USP54-208ENST00000461520 GLDCP23378 1020 aa8.59□□□□□ -1.03
USP54-208ENST00000461520 CTSKP43235 329 aa8.59□□□□□ -1.03
USP54-208ENST00000461520 KCTD2Q14681 263 aa8.59□□□□□ -1.03
USP54-208ENST00000461520 LCNL1Q6ZST4 164 aa8.59□□□□□ -1.03
USP54-208ENST00000461520 PRPF38AQ8NAV1 312 aaKnown RBP8.59□□□□□ -1.03
USP54-208ENST00000461520 ZSCAN18Q8TBC5 510 aaPredicted RBP8.59□□□□□ -1.03
USP54-208ENST00000461520 MKL1Q969V6 931 aa8.59□□□□□ -1.03
USP54-208ENST00000461520 SLF1Q9BQI6 1058 aa8.59□□□□□ -1.03
USP54-208ENST00000461520 FSD1Q9BTV5 496 aa8.59□□□□□ -1.03
USP54-208ENST00000461520 TEX13BQ9BXU2 312 aa8.59□□□□□ -1.03
USP54-208ENST00000461520 NAPBQ9H115 298 aa8.59□□□□□ -1.03
USP54-208ENST00000461520 ZNF552Q9H707 407 aaPredicted RBP8.59□□□□□ -1.03
USP54-208ENST00000461520 MTMR4Q9NYA4 1195 aa8.59□□□□□ -1.03
USP54-208ENST00000461520 SUCOQ9UBS9 1254 aaKnown RBP8.59□□□□□ -1.03
USP54-208ENST00000461520 CLIP2Q9UDT6 1046 aa8.59□□□□□ -1.03
USP54-208ENST00000461520 DDX41Q9UJV9 622 aaKnown RBP8.59□□□□□ -1.03
USP54-208ENST00000461520 PPT2Q9UMR5 302 aa8.59□□□□□ -1.03
USP54-208ENST00000461520 GREB1LQ9C091 1923 aaPredicted RBP8.58□□□□□ -1.04
USP54-208ENST00000461520 SALL3Q9BXA9 1300 aa8.58□□□□□ -1.04
USP54-208ENST00000461520 KBTBD13C9JR72 458 aa8.58□□□□□ -1.04
USP54-208ENST00000461520 ATP2A1O14983 1001 aa8.58□□□□□ -1.04
USP54-208ENST00000461520 PRDM1O75626 825 aa8.58□□□□□ -1.04
USP54-208ENST00000461520 TTLL1O95922 423 aa8.58□□□□□ -1.04
USP54-208ENST00000461520 TSPY3P0CV98 308 aa8.58□□□□□ -1.04
USP54-208ENST00000461520 TSPY8P0CW00 308 aa8.58□□□□□ -1.04
USP54-208ENST00000461520 KIR2DL1P43626 348 aaPredicted RBP8.58□□□□□ -1.04
USP54-208ENST00000461520 KIR2DL2P43627 348 aaPredicted RBP8.58□□□□□ -1.04
USP54-208ENST00000461520 KCNA10Q16322 511 aa8.58□□□□□ -1.04
USP54-208ENST00000461520 PRAMEF19Q5SWL8 479 aa8.58□□□□□ -1.04
USP54-208ENST00000461520 GJC2Q5T442 439 aaPredicted RBP8.58□□□□□ -1.04
USP54-208ENST00000461520 TDRD10Q5VZ19 366 aaKnown RBP8.58□□□□□ -1.04
USP54-208ENST00000461520 RUFY4Q6ZNE9 571 aa8.58□□□□□ -1.04
USP54-208ENST00000461520 CCDC144CPQ8IYA2 1237 aa8.58□□□□□ -1.04
USP54-208ENST00000461520 MSL3Q8N5Y2 521 aaKnown RBP8.58□□□□□ -1.04
USP54-208ENST00000461520 GMCL1P1Q8NEA9 526 aa8.58□□□□□ -1.04
USP54-208ENST00000461520 OTUD7AQ8TE49 926 aaPredicted RBP8.58□□□□□ -1.04
USP54-208ENST00000461520 CEP95Q96GE4 821 aa8.58□□□□□ -1.04
USP54-208ENST00000461520 DHRS1Q96LJ7 313 aa8.58□□□□□ -1.04
USP54-208ENST00000461520 SEC62Q99442 399 aaKnown RBP8.58□□□□□ -1.04
USP54-208ENST00000461520 NUP88Q99567 741 aaPredicted RBP8.58□□□□□ -1.04
USP54-208ENST00000461520 TINF2Q9BSI4 451 aa8.58□□□□□ -1.04
USP54-208ENST00000461520 PARP14Q460N5 1801 aa8.58□□□□□ -1.04
USP54-208ENST00000461520 PLIN4Q96Q06 1357 aa8.58□□□□□ -1.04
USP54-208ENST00000461520 NRDCO43847 1150 aa8.57□□□□□ -1.04
USP54-208ENST00000461520 ZBED4O75132 1171 aa8.57□□□□□ -1.04
USP54-208ENST00000461520 RECKO95980 971 aa8.57□□□□□ -1.04
USP54-208ENST00000461520 PGK2P07205 417 aa8.57□□□□□ -1.04
USP54-208ENST00000461520 RARBP10826 455 aa8.57□□□□□ -1.04
USP54-208ENST00000461520 IMPDH2P12268 514 aa8.57□□□□□ -1.04
USP54-208ENST00000461520 OAZ1P54368 228 aa8.57□□□□□ -1.04
USP54-208ENST00000461520 PPARAQ07869 468 aa8.57□□□□□ -1.04
USP54-208ENST00000461520 HDAC1Q13547 482 aaPredicted RBP8.57□□□□□ -1.04
USP54-208ENST00000461520 KIR3DS1Q14943 382 aa8.57□□□□□ -1.04
USP54-208ENST00000461520 LRRC41Q15345 812 aa8.57□□□□□ -1.04
USP54-208ENST00000461520 ADGRF1Q5T601 910 aa8.57□□□□□ -1.04
USP54-208ENST00000461520 ANKRD45Q5TZF3 282 aa8.57□□□□□ -1.04
USP54-208ENST00000461520 ANO1Q5XXA6 986 aa8.57□□□□□ -1.04
USP54-208ENST00000461520 SNRNP48Q6IEG0 339 aaKnown RBP8.57□□□□□ -1.04
USP54-208ENST00000461520 CRTC3Q6UUV7 619 aa8.57□□□□□ -1.04
USP54-208ENST00000461520 SLC39A5Q6ZMH5 540 aa8.57□□□□□ -1.04
USP54-208ENST00000461520 TICAM2Q86XR7 235 aa8.57□□□□□ -1.04
USP54-208ENST00000461520 EVI5LQ96CN4 794 aa8.57□□□□□ -1.04
USP54-208ENST00000461520 PLCD4Q9BRC7 762 aa8.57□□□□□ -1.04
USP54-208ENST00000461520 SGPP1Q9BX95 441 aa8.57□□□□□ -1.04
USP54-208ENST00000461520 SLC38A10Q9HBR0 1119 aa8.57□□□□□ -1.04
USP54-208ENST00000461520 FEM1BQ9UK73 627 aa8.57□□□□□ -1.04
USP54-208ENST00000461520 CTDP1Q9Y5B0 961 aaPredicted RBP8.57□□□□□ -1.04
USP54-208ENST00000461520 SHOXO15266 292 aa8.56□□□□□ -1.04
USP54-208ENST00000461520 ZSCAN22P10073 491 aaPredicted RBP8.56□□□□□ -1.04
USP54-208ENST00000461520 AKR1A1P14550 325 aa8.56□□□□□ -1.04
USP54-208ENST00000461520 SDHBP21912 280 aa8.56□□□□□ -1.04
USP54-208ENST00000461520 RTP1P59025 263 aa8.56□□□□□ -1.04
USP54-208ENST00000461520 DLG4P78352 724 aa8.56□□□□□ -1.04
USP54-208ENST00000461520 TFAP4Q01664 338 aa8.56□□□□□ -1.04
USP54-208ENST00000461520 KRTAP19-4Q3LI73 84 aa8.56□□□□□ -1.04
USP54-208ENST00000461520 FAM47AQ5JRC9 791 aa8.56□□□□□ -1.04
USP54-208ENST00000461520 LCE1DQ5T752 114 aa8.56□□□□□ -1.04
USP54-208ENST00000461520 SLFN13Q68D06 897 aa8.56□□□□□ -1.04
USP54-208ENST00000461520 MAMDC4Q6UXC1 1216 aa8.56□□□□□ -1.04
USP54-208ENST00000461520 RNF180Q86T96 592 aa8.56□□□□□ -1.04
USP54-208ENST00000461520 CPXCR1Q8N123 301 aa8.56□□□□□ -1.04
USP54-208ENST00000461520 LRRC47Q8N1G4 583 aaKnown RBP8.56□□□□□ -1.04
USP54-208ENST00000461520 DDX11Q96FC9 970 aa8.56□□□□□ -1.04
USP54-208ENST00000461520 GUCD1Q96NT3 240 aa8.56□□□□□ -1.04
USP54-208ENST00000461520 CRBNQ96SW2 442 aa8.56□□□□□ -1.04
USP54-208ENST00000461520 LBHD1Q9BQE6 289 aaPredicted RBP8.56□□□□□ -1.04
USP54-208ENST00000461520 XPNPEP3Q9NQH7 507 aa8.56□□□□□ -1.04
USP54-208ENST00000461520 HELLSQ9NRZ9 838 aa8.56□□□□□ -1.04
USP54-208ENST00000461520 FAM86C1Q9NVL1 165 aa8.56□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms