RNA–Protein interactions for RNA: ENST00000444458.5

CCDC88A-208, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 4,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-208ENST00000444458 SERPINF1P36955 418 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 BCL6P41182 706 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 NR1H2P55055 460 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 PPARDQ03181 441 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 IL10RAQ13651 578 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 SNX17Q15036 470 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 IFI16Q16666 785 aaKnown RBP2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 TSTQ16762 297 aaKnown RBP2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 C3orf36Q3SXR2 165 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 PRAMEF9Q5VWM5 478 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 KLHL24Q6TFL4 600 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 GADL1Q6ZQY3 521 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 RSPH3Q86UC2 560 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 CPNE8Q86YQ8 564 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 CCDC170Q8IYT3 715 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 PPP1R14CQ8TAE6 165 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 NPLOC4Q8TAT6 608 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 STYXQ8WUJ0 223 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 RNF141Q8WVD5 230 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 ZFPM2Q8WW38 1151 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 ASIC4Q96FT7 647 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 CCDC43Q96MW1 224 aaKnown RBP2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 GBP5Q96PP8 586 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 ASB2Q96Q27 587 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 MXD3Q9BW11 206 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 GPR63Q9BZJ6 419 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 GHITMQ9H3K2 345 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 JPH1Q9HDC5 661 aaPredicted RBP2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 TBC1D23Q9NUY8 699 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 SLTMQ9NWH9 1034 aaKnown RBP eCLIP2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 CPNE7Q9UBL6 633 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 ZNF215Q9UL58 517 aaPredicted RBP2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 MINPP1Q9UNW1 487 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 COA3Q9Y2R0 106 aaPredicted RBP2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 CFAP20Q9Y6A4 193 aaKnown RBP2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 USP19O94966 1318 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 TNFRSF10AO00220 468 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 RTCAO00442 366 aaKnown RBP2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 NPC1O15118 1278 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 PLA2G6O60733 806 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 KRT38O76015 456 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 LRIG2O94898 1065 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 TNFRSF6BO95407 300 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 HNRNPA1P09651 372 aaKnown RBP eCLIP2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 VEGFAP15692 232 aaPredicted RBP2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 FGFR2P21802 821 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 FMO1Q01740 532 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 ERV3-1Q14264 604 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 SUZ12Q15022 739 aaKnown RBP2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 EEF1DP3Q658K8 133 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 CREB3L3Q68CJ9 461 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 ACAD10Q6JQN1 1059 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 FAM180AQ6UWF9 173 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 TREML4Q6UXN2 200 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 ZNF765Q7L2R6 523 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 TMC3Q7Z5M5 1100 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 WFDC8Q8IUA0 241 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 UNC45BQ8IWX7 931 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 APPL2Q8NEU8 664 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 BRIX1Q8TDN6 353 aaKnown RBP2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 GTPBP3Q969Y2 492 aaKnown RBP2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 HIC2Q96JB3 615 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 FANCD2OSQ96PS1 177 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 LPIN3Q9BQK8 851 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 DESI2Q9BSY9 194 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 RIC8BQ9NVN3 520 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 MOSPD1Q9UJG1 213 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 AGTPBP1Q9UPW5 1226 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 ZNF711Q9Y462 761 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 PCDHA3Q9Y5H8 950 aa2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 TIMM13Q9Y5L4 95 aaPredicted RBP2.6□□□□□ -1.99
CCDC88A-208ENST00000444458 LOC100289279A0A1B0GTE1 492 aa2.59□□□□□ -1.99
CCDC88A-208ENST00000444458 C19orf81C9J6K1 198 aa2.59□□□□□ -1.99
CCDC88A-208ENST00000444458 FCHO1O14526 889 aa2.59□□□□□ -1.99
CCDC88A-208ENST00000444458 ARHGAP6O43182 974 aa2.59□□□□□ -1.99
CCDC88A-208ENST00000444458 MTSS1O43312 755 aa2.59□□□□□ -1.99
CCDC88A-208ENST00000444458 AFF3P51826 1226 aaKnown RBP2.59□□□□□ -1.99
CCDC88A-208ENST00000444458 MANFP55145 182 aaKnown RBP2.59□□□□□ -1.99
CCDC88A-208ENST00000444458 LACTBP83111 547 aaPredicted RBP2.59□□□□□ -1.99
CCDC88A-208ENST00000444458 NMIQ13287 307 aaPredicted RBP2.59□□□□□ -1.99
CCDC88A-208ENST00000444458 SLBPQ14493 270 aaKnown RBP eCLIP2.59□□□□□ -1.99
CCDC88A-208ENST00000444458 NOMO1Q15155 1222 aa2.59□□□□□ -1.99
CCDC88A-208ENST00000444458 ZNF800Q2TB10 664 aaPredicted RBP eCLIP2.59□□□□□ -1.994e-6■■□□□ 13.3
CCDC88A-208ENST00000444458 MUM1L1Q5H9M0 696 aa2.59□□□□□ -1.99
CCDC88A-208ENST00000444458 ZMYM1Q5SVZ6 1142 aa2.59□□□□□ -1.99
CCDC88A-208ENST00000444458 ANGEL2Q5VTE6 544 aaKnown RBP2.59□□□□□ -1.99
CCDC88A-208ENST00000444458 RRAGBQ5VZM2 374 aa2.59□□□□□ -1.99
CCDC88A-208ENST00000444458 KIAA1211Q6ZU35 1233 aa2.59□□□□□ -1.99
CCDC88A-208ENST00000444458 CEP68Q76N32 757 aa2.59□□□□□ -1.99
CCDC88A-208ENST00000444458 RIOX2Q8IUF8 465 aa2.59□□□□□ -1.99
CCDC88A-208ENST00000444458 CARNMT1Q8N4J0 409 aa2.59□□□□□ -1.99
CCDC88A-208ENST00000444458 TSPYL6Q8N831 410 aa2.59□□□□□ -1.99
CCDC88A-208ENST00000444458 DTWD2Q8NBA8 298 aa2.59□□□□□ -1.99
CCDC88A-208ENST00000444458 KLHL23Q8NBE8 558 aa2.59□□□□□ -1.99
CCDC88A-208ENST00000444458 AVL9Q8NBF6 648 aa2.59□□□□□ -1.99
CCDC88A-208ENST00000444458 TBC1D22AQ8WUA7 517 aa2.59□□□□□ -1.99
CCDC88A-208ENST00000444458 RFFLQ8WZ73 363 aa2.59□□□□□ -1.99
CCDC88A-208ENST00000444458 COPS5Q92905 334 aa2.59□□□□□ -1.99
CCDC88A-208ENST00000444458 SUCLG2Q96I99 432 aa2.59□□□□□ -1.99
CCDC88A-208ENST00000444458 CFAP53Q96M91 514 aa2.59□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms