RNA–Protein interactions for RNA: ENST00000443046.5

HMGN1-208, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-208ENST00000443046 COL4A3Q01955 1670 aa16.08■□□□□ 0.17
HMGN1-208ENST00000443046 ASAP2O43150 1006 aa16.08■□□□□ 0.16
HMGN1-208ENST00000443046 KINO60870 393 aaKnown RBP16.08■□□□□ 0.16
HMGN1-208ENST00000443046 AXLP30530 894 aa16.08■□□□□ 0.16
HMGN1-208ENST00000443046 MLH1P40692 756 aa16.08■□□□□ 0.16
HMGN1-208ENST00000443046 RFC5P40937 340 aa16.08■□□□□ 0.16
HMGN1-208ENST00000443046 SCNN1GP51170 649 aa16.08■□□□□ 0.16
HMGN1-208ENST00000443046 EVCP57679 992 aa16.08■□□□□ 0.16
HMGN1-208ENST00000443046 NPY5RQ15761 445 aa16.08■□□□□ 0.16
HMGN1-208ENST00000443046 USP41Q3LFD5 358 aa16.08■□□□□ 0.16
HMGN1-208ENST00000443046 BMP2KLQ5H9B9 411 aa16.08■□□□□ 0.16
HMGN1-208ENST00000443046 PARM1Q6UWI2 310 aa16.08■□□□□ 0.16
HMGN1-208ENST00000443046 CCDC51Q96ER9 411 aa16.08■□□□□ 0.16
HMGN1-208ENST00000443046 SHDQ96IW2 340 aa16.08■□□□□ 0.16
HMGN1-208ENST00000443046 CEP170P1Q96L14 293 aa16.08■□□□□ 0.16
HMGN1-208ENST00000443046 B3GALT6Q96L58 329 aa16.08■□□□□ 0.16
HMGN1-208ENST00000443046 ZFP42Q96MM3 310 aa16.08■□□□□ 0.16
HMGN1-208ENST00000443046 HINFPQ9BQA5 517 aa16.08■□□□□ 0.16
HMGN1-208ENST00000443046 COLEC11Q9BWP8 271 aa16.08■□□□□ 0.16
HMGN1-208ENST00000443046 OSBPL6Q9BZF3 934 aa16.08■□□□□ 0.16
HMGN1-208ENST00000443046 CHD8Q9HCK8 2581 aa16.07■□□□□ 0.16
HMGN1-208ENST00000443046 KANSL1LA0AUZ9 987 aa16.07■□□□□ 0.16
HMGN1-208ENST00000443046 SPTLC1O15269 473 aa16.07■□□□□ 0.16
HMGN1-208ENST00000443046 TSPAN1O60635 241 aa16.07■□□□□ 0.16
HMGN1-208ENST00000443046 NLRP5P59047 1200 aa16.07■□□□□ 0.16
HMGN1-208ENST00000443046 FGD1P98174 961 aa16.07■□□□□ 0.16
HMGN1-208ENST00000443046 FUT10Q6P4F1 479 aa16.07■□□□□ 0.16
HMGN1-208ENST00000443046 FERMT3Q86UX7 667 aa16.07■□□□□ 0.16
HMGN1-208ENST00000443046 IFNLR1Q8IU57 520 aaPredicted RBP16.07■□□□□ 0.16
HMGN1-208ENST00000443046 RNF149Q8NC42 400 aa16.07■□□□□ 0.16
HMGN1-208ENST00000443046 ST13P5Q8NFI4 369 aaPredicted RBP16.07■□□□□ 0.16
HMGN1-208ENST00000443046 NELL1Q92832 810 aa16.07■□□□□ 0.16
HMGN1-208ENST00000443046 CNTNAP3BQ96NU0 1288 aa16.07■□□□□ 0.16
HMGN1-208ENST00000443046 CNTNAP3Q9BZ76 1288 aa16.07■□□□□ 0.16
HMGN1-208ENST00000443046 GIT1Q9Y2X7 761 aa16.07■□□□□ 0.16
HMGN1-208ENST00000443046 MTF2Q9Y483 593 aaPredicted RBP16.07■□□□□ 0.16
HMGN1-208ENST00000443046 HES2Q9Y543 173 aa16.07■□□□□ 0.16
HMGN1-208ENST00000443046 NOTCH4Q99466 2003 aa16.07■□□□□ 0.16
HMGN1-208ENST00000443046 CHD6Q8TD26 2715 aa16.06■□□□□ 0.16
HMGN1-208ENST00000443046 SLC37A4O43826 429 aa16.06■□□□□ 0.16
HMGN1-208ENST00000443046 DKC1O60832 514 aaKnown RBP eCLIP16.06■□□□□ 0.16
HMGN1-208ENST00000443046 P4HBP07237 508 aaKnown RBP16.06■□□□□ 0.16
HMGN1-208ENST00000443046 FSHRP23945 695 aa16.06■□□□□ 0.16
HMGN1-208ENST00000443046 PTENP60484 403 aa16.06■□□□□ 0.16
HMGN1-208ENST00000443046 CREMQ03060 361 aa16.06■□□□□ 0.16
HMGN1-208ENST00000443046 PRKCQQ04759 706 aa16.06■□□□□ 0.16
HMGN1-208ENST00000443046 POU5F1BQ06416 359 aa16.06■□□□□ 0.16
HMGN1-208ENST00000443046 AMHR2Q16671 573 aa16.06■□□□□ 0.16
HMGN1-208ENST00000443046 VARS2Q5ST30 1063 aaKnown RBP16.06■□□□□ 0.16
HMGN1-208ENST00000443046 NOTUMQ6P988 496 aa16.06■□□□□ 0.16
HMGN1-208ENST00000443046 C4orf19Q8IY42 314 aa16.06■□□□□ 0.16
HMGN1-208ENST00000443046 DAGLBQ8NCG7 672 aa16.06■□□□□ 0.16
HMGN1-208ENST00000443046 ZBTB44Q8NCP5 570 aa16.06■□□□□ 0.16
HMGN1-208ENST00000443046 CSRNP2Q9H175 543 aa16.06■□□□□ 0.16
HMGN1-208ENST00000443046 KCNMB3Q9NPA1 279 aa16.06■□□□□ 0.16
HMGN1-208ENST00000443046 FBXW11Q9UKB1 542 aa16.06■□□□□ 0.16
HMGN1-208ENST00000443046 ADAM28Q9UKQ2 775 aa16.06■□□□□ 0.16
HMGN1-208ENST00000443046 CDH7Q9ULB5 785 aa16.06■□□□□ 0.16
HMGN1-208ENST00000443046 PCDHGA2Q9Y5H1 932 aa16.06■□□□□ 0.16
HMGN1-208ENST00000443046 ARID2Q68CP9 1835 aa16.05■□□□□ 0.16
HMGN1-208ENST00000443046 ZMYM2Q9UBW7 1377 aa16.05■□□□□ 0.16
HMGN1-208ENST00000443046 LILRB5O75023 590 aa16.05■□□□□ 0.16
HMGN1-208ENST00000443046 NR1I2O75469 434 aa16.05■□□□□ 0.16
HMGN1-208ENST00000443046 KRT37O76014 449 aa16.05■□□□□ 0.16
HMGN1-208ENST00000443046 ERLIN2O94905 339 aa16.05■□□□□ 0.16
HMGN1-208ENST00000443046 HNRNPA1P09651 372 aaKnown RBP eCLIP16.05■□□□□ 0.16
HMGN1-208ENST00000443046 RPL17P18621 184 aaKnown RBP16.05■□□□□ 0.16
HMGN1-208ENST00000443046 PDIA3P30101 505 aaKnown RBP16.05■□□□□ 0.16
HMGN1-208ENST00000443046 ATXN1P54253 815 aaKnown RBP16.05■□□□□ 0.16
HMGN1-208ENST00000443046 SNW1Q13573 536 aaKnown RBP16.05■□□□□ 0.16
HMGN1-208ENST00000443046 EMC2Q15006 297 aa16.05■□□□□ 0.16
HMGN1-208ENST00000443046 MLF2Q15773 248 aaPredicted RBP16.05■□□□□ 0.16
HMGN1-208ENST00000443046 SLC44A4Q53GD3 710 aa16.05■□□□□ 0.16
HMGN1-208ENST00000443046 RSPO2Q6UXX9 243 aaPredicted RBP16.05■□□□□ 0.16
HMGN1-208ENST00000443046 GRASPQ7Z6J2 395 aaPredicted RBP16.05■□□□□ 0.16
HMGN1-208ENST00000443046 BLIDQ8IZY5 108 aa16.05■□□□□ 0.16
HMGN1-208ENST00000443046 FAM177A1Q8N128 213 aaPredicted RBP16.05■□□□□ 0.16
HMGN1-208ENST00000443046 GPR161Q8N6U8 529 aaKnown RBP16.05■□□□□ 0.16
HMGN1-208ENST00000443046 TCP11Q8WWU5 503 aa16.05■□□□□ 0.16
HMGN1-208ENST00000443046 FAM20AQ96MK3 541 aa16.05■□□□□ 0.16
HMGN1-208ENST00000443046 BCO2Q9BYV7 579 aa16.05■□□□□ 0.16
HMGN1-208ENST00000443046 DDX25Q9UHL0 483 aaKnown RBP16.05■□□□□ 0.16
HMGN1-208ENST00000443046 SDHBP21912 280 aa16.04■□□□□ 0.16
HMGN1-208ENST00000443046 TGM1P22735 817 aa16.04■□□□□ 0.16
HMGN1-208ENST00000443046 HOXA9P31269 272 aa16.04■□□□□ 0.16
HMGN1-208ENST00000443046 YWHABP31946 246 aaKnown RBP16.04■□□□□ 0.16
HMGN1-208ENST00000443046 MAGEA9P43362 315 aa16.04■□□□□ 0.16
HMGN1-208ENST00000443046 NTHL1P78549 312 aa16.04■□□□□ 0.16
HMGN1-208ENST00000443046 RTP2Q5QGT7 225 aa16.04■□□□□ 0.16
HMGN1-208ENST00000443046 GLYCTKQ8IVS8 523 aa16.04■□□□□ 0.16
HMGN1-208ENST00000443046 FGF13Q92913 245 aa16.04■□□□□ 0.16
HMGN1-208ENST00000443046 CLDN23Q96B33 292 aa16.04■□□□□ 0.16
HMGN1-208ENST00000443046 CPB2Q96IY4 423 aa16.04■□□□□ 0.16
HMGN1-208ENST00000443046 JAKMIP1Q96N16 626 aaKnown RBP16.04■□□□□ 0.16
HMGN1-208ENST00000443046 CLSTN3Q9BQT9 956 aa16.04■□□□□ 0.16
HMGN1-208ENST00000443046 EPC1Q9H2F5 836 aa16.04■□□□□ 0.16
HMGN1-208ENST00000443046 NXF3Q9H4D5 531 aaKnown RBP16.04■□□□□ 0.16
HMGN1-208ENST00000443046 NCOA5Q9HCD5 579 aaKnown RBP16.04■□□□□ 0.16
HMGN1-208ENST00000443046 XPNPEP1Q9NQW7 623 aa16.04■□□□□ 0.16
HMGN1-208ENST00000443046 SPATA6Q9NWH7 488 aaPredicted RBP16.04■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms