RNA–Protein interactions for RNA: ENST00000441074.3

LTBR-203, Transcript of lymphotoxin beta receptor, humanhuman

TSL 1 (best)

Gene LTBR, Length 2,327 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTBR-203ENST00000441074 RNF43Q68DV7 783 aa12.77□□□□□ -0.36
LTBR-203ENST00000441074 LMNTD2Q8IXW0 634 aa12.77□□□□□ -0.36
LTBR-203ENST00000441074 KCNV2Q8TDN2 545 aa12.77□□□□□ -0.36
LTBR-203ENST00000441074 ACER1Q8TDN7 264 aa12.77□□□□□ -0.36
LTBR-203ENST00000441074 CKAP2Q8WWK9 683 aa12.77□□□□□ -0.36
LTBR-203ENST00000441074 FGFBP2Q9BYJ0 223 aa12.77□□□□□ -0.36
LTBR-203ENST00000441074 GLIS2Q9BZE0 524 aaPredicted RBP12.77□□□□□ -0.36
LTBR-203ENST00000441074 MYOZ2Q9NPC6 264 aa12.77□□□□□ -0.36
LTBR-203ENST00000441074 PPP1R9AQ9ULJ8 1098 aa12.77□□□□□ -0.36
LTBR-203ENST00000441074 ZNF541Q9H0D2 1346 aa12.77□□□□□ -0.37
LTBR-203ENST00000441074 PODXLO00592 558 aa12.77□□□□□ -0.37
LTBR-203ENST00000441074 UNC5CO95185 931 aa12.77□□□□□ -0.37
LTBR-203ENST00000441074 AFPP02771 609 aaKnown RBP12.77□□□□□ -0.37
LTBR-203ENST00000441074 SNHG28P0DPA3 235 aa12.77□□□□□ -0.37
LTBR-203ENST00000441074 CALB2P22676 271 aa12.77□□□□□ -0.37
LTBR-203ENST00000441074 COPB2P35606 906 aa12.77□□□□□ -0.37
LTBR-203ENST00000441074 JAM2P57087 298 aa12.77□□□□□ -0.37
LTBR-203ENST00000441074 FRMD5Q7Z6J6 570 aa12.77□□□□□ -0.37
LTBR-203ENST00000441074 FBF1Q8TES7 1133 aa12.77□□□□□ -0.37
LTBR-203ENST00000441074 RFFLQ8WZ73 363 aa12.77□□□□□ -0.37
LTBR-203ENST00000441074 RUNDC3BQ96NL0 473 aa12.77□□□□□ -0.37
LTBR-203ENST00000441074 RNPEPL1Q9HAU8 725 aa12.77□□□□□ -0.37
LTBR-203ENST00000441074 TMOD2Q9NZR1 351 aa12.77□□□□□ -0.37
LTBR-203ENST00000441074 DDX25Q9UHL0 483 aaKnown RBP12.77□□□□□ -0.37
LTBR-203ENST00000441074 DICER1Q9UPY3 1922 aaKnown RBP12.76□□□□□ -0.37
LTBR-203ENST00000441074 PHF2O75151 1096 aa12.76□□□□□ -0.37
LTBR-203ENST00000441074 SMIM24O75264 130 aa12.76□□□□□ -0.37
LTBR-203ENST00000441074 TMEM253P0C7T8 217 aa12.76□□□□□ -0.37
LTBR-203ENST00000441074 HSPA6P17066 643 aa12.76□□□□□ -0.37
LTBR-203ENST00000441074 ATP6V1C1P21283 382 aa12.76□□□□□ -0.37
LTBR-203ENST00000441074 CHRNA3P32297 505 aa12.76□□□□□ -0.37
LTBR-203ENST00000441074 RPL21P46778 160 aaKnown RBP12.76□□□□□ -0.37
LTBR-203ENST00000441074 GCLCP48506 637 aaPredicted RBP12.76□□□□□ -0.37
LTBR-203ENST00000441074 TNNI2P48788 182 aa12.76□□□□□ -0.37
LTBR-203ENST00000441074 DGKZQ13574 1117 aa12.76□□□□□ -0.37
LTBR-203ENST00000441074 LRRC14Q15048 493 aa12.76□□□□□ -0.37
LTBR-203ENST00000441074 SGSM1Q2NKQ1 1148 aa12.76□□□□□ -0.37
LTBR-203ENST00000441074 SPDYE2Q495Y8 402 aa12.76□□□□□ -0.37
LTBR-203ENST00000441074 UBAP2Q5T6F2 1119 aaKnown RBP12.76□□□□□ -0.37
LTBR-203ENST00000441074 DLK2Q6UY11 383 aa12.76□□□□□ -0.37
LTBR-203ENST00000441074 ADAT2Q7Z6V5 191 aaKnown RBP12.76□□□□□ -0.37
LTBR-203ENST00000441074 SLC30A5Q8TAD4 765 aa12.76□□□□□ -0.37
LTBR-203ENST00000441074 UHMK1Q8TAS1 419 aaKnown RBP12.76□□□□□ -0.37
LTBR-203ENST00000441074 SLC35G2Q8TBE7 412 aa12.76□□□□□ -0.37
LTBR-203ENST00000441074 ZFAND2BQ8WV99 257 aa12.76□□□□□ -0.37
LTBR-203ENST00000441074 SCFD1Q8WVM8 642 aa12.76□□□□□ -0.37
LTBR-203ENST00000441074 EMILIN3Q9NT22 766 aa12.76□□□□□ -0.37
LTBR-203ENST00000441074 TXLNGQ9NUQ3 528 aa12.76□□□□□ -0.37
LTBR-203ENST00000441074 TBC1D7Q9P0N9 293 aa12.76□□□□□ -0.37
LTBR-203ENST00000441074 NKX1-2Q9UD57 310 aaPredicted RBP12.76□□□□□ -0.37
LTBR-203ENST00000441074 PNMA6FA0A0J9YX94 578 aa12.76□□□□□ -0.37
LTBR-203ENST00000441074 TMEM120BA0PK00 339 aa12.76□□□□□ -0.37
LTBR-203ENST00000441074 F5H6K3 240 aa12.76□□□□□ -0.37
LTBR-203ENST00000441074 EDIL3O43854 480 aa12.76□□□□□ -0.37
LTBR-203ENST00000441074 ENTPD3O75355 529 aa12.76□□□□□ -0.37
LTBR-203ENST00000441074 ATP5HO75947 161 aa12.76□□□□□ -0.37
LTBR-203ENST00000441074 DDNO94850 711 aaPredicted RBP12.76□□□□□ -0.37
LTBR-203ENST00000441074 RTN3O95197 1032 aaPredicted RBP12.76□□□□□ -0.37
LTBR-203ENST00000441074 GNAT1P11488 350 aa12.76□□□□□ -0.37
LTBR-203ENST00000441074 FGFR4P22455 802 aa12.76□□□□□ -0.37
LTBR-203ENST00000441074 CNGA1P29973 690 aa12.76□□□□□ -0.37
LTBR-203ENST00000441074 CLK2P49760 499 aaKnown RBP12.76□□□□□ -0.37
LTBR-203ENST00000441074 GMPSP49915 693 aaPredicted RBP12.76□□□□□ -0.37
LTBR-203ENST00000441074 MXRA7P84157 204 aa12.76□□□□□ -0.37
LTBR-203ENST00000441074 ACVR2BQ13705 512 aa12.76□□□□□ -0.37
LTBR-203ENST00000441074 PDCD2Q16342 344 aaPredicted RBP12.76□□□□□ -0.37
LTBR-203ENST00000441074 ECM1Q16610 540 aa12.76□□□□□ -0.37
LTBR-203ENST00000441074 UBE2SQ16763 222 aa12.76□□□□□ -0.37
LTBR-203ENST00000441074 SLC5A9Q2M3M2 681 aa12.76□□□□□ -0.37
LTBR-203ENST00000441074 TRIM68Q6AZZ1 485 aa12.76□□□□□ -0.37
LTBR-203ENST00000441074 MICALL2Q8IY33 904 aa12.76□□□□□ -0.37
LTBR-203ENST00000441074 MGARPQ8TDB4 240 aa12.76□□□□□ -0.37
LTBR-203ENST00000441074 UTP4Q969X6 686 aaKnown RBP12.76□□□□□ -0.37
LTBR-203ENST00000441074 GLT8D2Q9H1C3 349 aa12.76□□□□□ -0.37
LTBR-203ENST00000441074 ETNK1Q9HBU6 452 aa12.76□□□□□ -0.37
LTBR-203ENST00000441074 OSGEPQ9NPF4 335 aa12.76□□□□□ -0.37
LTBR-203ENST00000441074 KLHL14Q9P2G3 628 aa12.76□□□□□ -0.37
LTBR-203ENST00000441074 CTNNAL1Q9UBT7 734 aa12.76□□□□□ -0.37
LTBR-203ENST00000441074 ARMCX3Q9UH62 379 aaPredicted RBP12.76□□□□□ -0.37
LTBR-203ENST00000441074 PCYOX1Q9UHG3 505 aa12.76□□□□□ -0.37
LTBR-203ENST00000441074 MARCH6O60337 910 aa12.75□□□□□ -0.37
LTBR-203ENST00000441074 ATP5DP30049 168 aa12.75□□□□□ -0.37
LTBR-203ENST00000441074 EPHA7Q15375 998 aa12.75□□□□□ -0.37
LTBR-203ENST00000441074 GNPTABQ3T906 1256 aa12.75□□□□□ -0.37
LTBR-203ENST00000441074 SLFN13Q68D06 897 aa12.75□□□□□ -0.37
LTBR-203ENST00000441074 VSTM1Q6UX27 236 aa12.75□□□□□ -0.37
LTBR-203ENST00000441074 GALNT15Q8N3T1 639 aa12.75□□□□□ -0.37
LTBR-203ENST00000441074 STK32AQ8WU08 396 aa12.75□□□□□ -0.37
LTBR-203ENST00000441074 ARHGEF2Q92974 986 aaKnown RBP12.75□□□□□ -0.37
LTBR-203ENST00000441074 GJA10Q969M2 543 aa12.75□□□□□ -0.37
LTBR-203ENST00000441074 CCDC17Q96LX7 622 aa12.75□□□□□ -0.37
LTBR-203ENST00000441074 RMDN2Q96LZ7 410 aa12.75□□□□□ -0.37
LTBR-203ENST00000441074 SERPINB12Q96P63 405 aa12.75□□□□□ -0.37
LTBR-203ENST00000441074 SIX2Q9NPC8 291 aa12.75□□□□□ -0.37
LTBR-203ENST00000441074 CYP39A1Q9NYL5 469 aa12.75□□□□□ -0.37
LTBR-203ENST00000441074 ASB3Q9Y575 518 aa12.75□□□□□ -0.37
LTBR-203ENST00000441074 PCDHA3Q9Y5H8 950 aa12.75□□□□□ -0.37
LTBR-203ENST00000441074 MYO3BQ8WXR4 1341 aa12.75□□□□□ -0.37
LTBR-203ENST00000441074 PITPNM2Q9BZ72 1349 aa12.75□□□□□ -0.37
LTBR-203ENST00000441074 ALAS1P13196 640 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms