RNA–Protein interactions for RNA: ENST00000438395.5

VPS50-204, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 3

Gene VPS50, Length 538 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-204ENST00000438395 TBC1D13Q9NVG8 400 aa8.66□□□□□ -1.02
VPS50-204ENST00000438395 KANSL3Q9P2N6 904 aa8.66□□□□□ -1.02
VPS50-204ENST00000438395 DBR1Q9UK59 544 aaKnown RBP8.66□□□□□ -1.02
VPS50-204ENST00000438395 PCDHB2Q9Y5E7 798 aa8.66□□□□□ -1.02
VPS50-204ENST00000438395 TRIOO75962 3097 aa8.66□□□□□ -1.02
VPS50-204ENST00000438395 ZFHX2Q9C0A1 2572 aaPredicted RBP8.66□□□□□ -1.02
VPS50-204ENST00000438395 IGKV6-21A0A0C4DH24 114 aa8.65□□□□□ -1.02
VPS50-204ENST00000438395 J3QL48 77 aa8.65□□□□□ -1.02
VPS50-204ENST00000438395 TBX3O15119 743 aa8.65□□□□□ -1.02
VPS50-204ENST00000438395 EIF5BO60841 1220 aaKnown RBP8.65□□□□□ -1.02
VPS50-204ENST00000438395 CLASP2O75122 1294 aaKnown RBP8.65□□□□□ -1.02
VPS50-204ENST00000438395 URODP06132 367 aa8.65□□□□□ -1.02
VPS50-204ENST00000438395 YWHABP31946 246 aaKnown RBP8.65□□□□□ -1.02
VPS50-204ENST00000438395 KRT2P35908 639 aa8.65□□□□□ -1.02
VPS50-204ENST00000438395 NPEPPSP55786 919 aa8.65□□□□□ -1.02
VPS50-204ENST00000438395 LAMTOR4Q0VGL1 99 aa8.65□□□□□ -1.02
VPS50-204ENST00000438395 ATAT1Q5SQI0 421 aa8.65□□□□□ -1.02
VPS50-204ENST00000438395 PPP4R3AQ6IN85 833 aa8.65□□□□□ -1.02
VPS50-204ENST00000438395 SRGAP1Q7Z6B7 1085 aa8.65□□□□□ -1.02
VPS50-204ENST00000438395 DDX53Q86TM3 631 aaKnown RBP8.65□□□□□ -1.02
VPS50-204ENST00000438395 KSR1Q8IVT5 923 aa8.65□□□□□ -1.02
VPS50-204ENST00000438395 UBALD2Q8IYN6 164 aa8.65□□□□□ -1.02
VPS50-204ENST00000438395 RNF149Q8NC42 400 aa8.65□□□□□ -1.02
VPS50-204ENST00000438395 KREMEN2Q8NCW0 462 aa8.65□□□□□ -1.02
VPS50-204ENST00000438395 PRPF31Q8WWY3 499 aaKnown RBP8.65□□□□□ -1.02
VPS50-204ENST00000438395 AUTS2Q8WXX7 1259 aa8.65□□□□□ -1.02
VPS50-204ENST00000438395 TMEM143Q96AN5 459 aa8.65□□□□□ -1.02
VPS50-204ENST00000438395 ACSF2Q96CM8 615 aaPredicted RBP8.65□□□□□ -1.02
VPS50-204ENST00000438395 IGSF21Q96ID5 467 aa8.65□□□□□ -1.02
VPS50-204ENST00000438395 PHF20Q9BVI0 1012 aa8.65□□□□□ -1.02
VPS50-204ENST00000438395 TRIM6Q9C030 488 aaPredicted RBP8.65□□□□□ -1.02
VPS50-204ENST00000438395 ZBP1Q9H171 429 aa8.65□□□□□ -1.02
VPS50-204ENST00000438395 IRF2BPLQ9H1B7 796 aa8.65□□□□□ -1.02
VPS50-204ENST00000438395 S1PR5Q9H228 398 aa8.65□□□□□ -1.02
VPS50-204ENST00000438395 MFSD1Q9H3U5 465 aa8.65□□□□□ -1.02
VPS50-204ENST00000438395 ZSWIM4Q9H7M6 989 aa8.65□□□□□ -1.02
VPS50-204ENST00000438395 RSAD1Q9HA92 442 aa8.65□□□□□ -1.02
VPS50-204ENST00000438395 KCNMB3Q9NPA1 279 aa8.65□□□□□ -1.02
VPS50-204ENST00000438395 ORC3Q9UBD5 711 aaPredicted RBP8.65□□□□□ -1.02
VPS50-204ENST00000438395 VAV3Q9UKW4 847 aa8.65□□□□□ -1.02
VPS50-204ENST00000438395 C5orf42Q9H799 3197 aa8.65□□□□□ -1.02
VPS50-204ENST00000438395 TECTAO75443 2155 aa8.65□□□□□ -1.03
VPS50-204ENST00000438395 MYH9P35579 1960 aaKnown RBP8.64□□□□□ -1.03
VPS50-204ENST00000438395 ZNF318Q5VUA4 2279 aa8.64□□□□□ -1.03
VPS50-204ENST00000438395 INO80B-WBP1J3KQ70 363 aa8.64□□□□□ -1.03
VPS50-204ENST00000438395 EML1O00423 815 aa8.64□□□□□ -1.03
VPS50-204ENST00000438395 ASAP2O43150 1006 aa8.64□□□□□ -1.03
VPS50-204ENST00000438395 ZNF623O75123 536 aa8.64□□□□□ -1.03
VPS50-204ENST00000438395 SSBP05455 408 aaKnown RBP eCLIP8.64□□□□□ -1.03
VPS50-204ENST00000438395 CTSAP10619 480 aa8.64□□□□□ -1.03
VPS50-204ENST00000438395 ITGA4P13612 1032 aa8.64□□□□□ -1.03
VPS50-204ENST00000438395 KLRC2P26717 231 aa8.64□□□□□ -1.03
VPS50-204ENST00000438395 SLC11A1P49279 550 aa8.64□□□□□ -1.03
VPS50-204ENST00000438395 CYP4A11Q02928 519 aa8.64□□□□□ -1.03
VPS50-204ENST00000438395 SCRN1Q12765 414 aa8.64□□□□□ -1.03
VPS50-204ENST00000438395 MXD4Q14582 209 aaPredicted RBP8.64□□□□□ -1.03
VPS50-204ENST00000438395 PCBP1Q15365 356 aaKnown RBP eCLIP8.64□□□□□ -1.03
VPS50-204ENST00000438395 EPHA7Q15375 998 aa8.64□□□□□ -1.03
VPS50-204ENST00000438395 CALCRLQ16602 461 aa8.64□□□□□ -1.03
VPS50-204ENST00000438395 TMEM132AQ24JP5 1023 aa8.64□□□□□ -1.03
VPS50-204ENST00000438395 KIAA1841Q6NSI8 718 aa8.64□□□□□ -1.03
VPS50-204ENST00000438395 B3GNT9Q6UX72 402 aa8.64□□□□□ -1.03
VPS50-204ENST00000438395 CCDC149Q6ZUS6 474 aa8.64□□□□□ -1.03
VPS50-204ENST00000438395 TPH2Q8IWU9 490 aa8.64□□□□□ -1.03
VPS50-204ENST00000438395 C4orf19Q8IY42 314 aa8.64□□□□□ -1.03
VPS50-204ENST00000438395 CNNM3Q8NE01 707 aa8.64□□□□□ -1.03
VPS50-204ENST00000438395 CCDC51Q96ER9 411 aa8.64□□□□□ -1.03
VPS50-204ENST00000438395 POMKQ9H5K3 350 aa8.64□□□□□ -1.03
VPS50-204ENST00000438395 DHX33Q9H6R0 707 aaKnown RBP8.64□□□□□ -1.03
VPS50-204ENST00000438395 SFXN1Q9H9B4 322 aa8.64□□□□□ -1.03
VPS50-204ENST00000438395 UBN1Q9NPG3 1134 aa8.64□□□□□ -1.03
VPS50-204ENST00000438395 MRPL17Q9NRX2 175 aaKnown RBP8.64□□□□□ -1.03
VPS50-204ENST00000438395 DPP7Q9UHL4 492 aa8.64□□□□□ -1.03
VPS50-204ENST00000438395 SORCS3Q9UPU3 1222 aa8.64□□□□□ -1.03
VPS50-204ENST00000438395 FAN1Q9Y2M0 1017 aa8.64□□□□□ -1.03
VPS50-204ENST00000438395 KIAA1671Q9BY89 1806 aa8.64□□□□□ -1.03
VPS50-204ENST00000438395 EVPLQ92817 2033 aa8.63□□□□□ -1.03
VPS50-204ENST00000438395 C2CD4DB7Z1M9 353 aa8.63□□□□□ -1.03
VPS50-204ENST00000438395 CFAP99D6REC4 459 aa8.63□□□□□ -1.03
VPS50-204ENST00000438395 M0R2N6 131 aa8.63□□□□□ -1.03
VPS50-204ENST00000438395 C2CD2LO14523 706 aa8.63□□□□□ -1.03
VPS50-204ENST00000438395 EDIL3O43854 480 aa8.63□□□□□ -1.03
VPS50-204ENST00000438395 NEMFO60524 1076 aa8.63□□□□□ -1.03
VPS50-204ENST00000438395 PFKFB2O60825 505 aa8.63□□□□□ -1.03
VPS50-204ENST00000438395 OFD1O75665 1012 aa8.63□□□□□ -1.03
VPS50-204ENST00000438395 STBD1O95210 358 aa8.63□□□□□ -1.03
VPS50-204ENST00000438395 ALDH2P05091 517 aa8.63□□□□□ -1.03
VPS50-204ENST00000438395 ADH1AP07327 375 aa8.63□□□□□ -1.03
VPS50-204ENST00000438395 GALTP07902 379 aa8.63□□□□□ -1.03
VPS50-204ENST00000438395 WEE2P0C1S8 567 aa8.63□□□□□ -1.03
VPS50-204ENST00000438395 CCNYL3P0C7X3 344 aa8.63□□□□□ -1.03
VPS50-204ENST00000438395 EPCAMP16422 314 aa8.63□□□□□ -1.03
VPS50-204ENST00000438395 RFX1P22670 979 aa8.63□□□□□ -1.03
VPS50-204ENST00000438395 AK2P54819 239 aa8.63□□□□□ -1.03
VPS50-204ENST00000438395 ANAPC15P60006 121 aa8.63□□□□□ -1.03
VPS50-204ENST00000438395 KCNC3Q14003 757 aa8.63□□□□□ -1.03
VPS50-204ENST00000438395 CTTNQ14247 550 aaKnown RBP8.63□□□□□ -1.03
VPS50-204ENST00000438395 SAFBQ15424 915 aaKnown RBP eCLIP8.63□□□□□ -1.03
VPS50-204ENST00000438395 PTPN14Q15678 1187 aa8.63□□□□□ -1.03
VPS50-204ENST00000438395 NPY5RQ15761 445 aa8.63□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms