RNA–Protein interactions for RNA: ENST00000435823.1

COL28A1-203, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL28A1, Length 678 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-203ENST00000435823 FAM178BQ8IXR5 827 aa12.58□□□□□ -0.4
COL28A1-203ENST00000435823 IQUBQ8NA54 791 aa12.58□□□□□ -0.4
COL28A1-203ENST00000435823 SLC17A8Q8NDX2 589 aa12.58□□□□□ -0.4
COL28A1-203ENST00000435823 TMEM161BQ8NDZ6 487 aa12.58□□□□□ -0.4
COL28A1-203ENST00000435823 PYM1Q9BRP8 204 aaKnown RBP12.58□□□□□ -0.4
COL28A1-203ENST00000435823 CUEDC2Q9H467 287 aa12.58□□□□□ -0.4
COL28A1-203ENST00000435823 TBC1D13Q9NVG8 400 aa12.58□□□□□ -0.4
COL28A1-203ENST00000435823 SPG21Q9NZD8 308 aa12.58□□□□□ -0.4
COL28A1-203ENST00000435823 PUF60Q9UHX1 559 aaKnown RBP12.58□□□□□ -0.4
COL28A1-203ENST00000435823 USP20Q9Y2K6 914 aa12.58□□□□□ -0.4
COL28A1-203ENST00000435823 A0A087X0B3 334 aa12.57□□□□□ -0.4
COL28A1-203ENST00000435823 ARL5CA6NH57 179 aa12.57□□□□□ -0.4
COL28A1-203ENST00000435823 ZC3H11AO75152 810 aaKnown RBP eCLIP12.57□□□□□ -0.4
COL28A1-203ENST00000435823 FGF18O76093 207 aa12.57□□□□□ -0.4
COL28A1-203ENST00000435823 POMCP01189 267 aa12.57□□□□□ -0.4
COL28A1-203ENST00000435823 EDN1P05305 212 aa12.57□□□□□ -0.4
COL28A1-203ENST00000435823 ITGB1P05556 798 aa12.57□□□□□ -0.4
COL28A1-203ENST00000435823 AKAP5P24588 427 aa12.57□□□□□ -0.4
COL28A1-203ENST00000435823 BCAR1P56945 870 aa12.57□□□□□ -0.4
COL28A1-203ENST00000435823 KRT17Q04695 432 aa12.57□□□□□ -0.4
COL28A1-203ENST00000435823 EEF1DP3Q658K8 133 aa12.57□□□□□ -0.4
COL28A1-203ENST00000435823 DYMQ7RTS9 669 aa12.57□□□□□ -0.4
COL28A1-203ENST00000435823 TAS1R3Q7RTX0 852 aa12.57□□□□□ -0.4
COL28A1-203ENST00000435823 HAUS6Q7Z4H7 955 aa12.57□□□□□ -0.4
COL28A1-203ENST00000435823 SPPL3Q8TCT6 385 aa12.57□□□□□ -0.4
COL28A1-203ENST00000435823 POF1BQ8WVV4 589 aa12.57□□□□□ -0.4
COL28A1-203ENST00000435823 DDX12PQ92771 950 aa12.57□□□□□ -0.4
COL28A1-203ENST00000435823 PPP2R3CQ969Q6 453 aa12.57□□□□□ -0.4
COL28A1-203ENST00000435823 DHX58Q96C10 678 aa12.57□□□□□ -0.4
COL28A1-203ENST00000435823 BICD1Q96G01 975 aa12.57□□□□□ -0.4
COL28A1-203ENST00000435823 RPS6KC1Q96S38 1066 aa12.57□□□□□ -0.4
COL28A1-203ENST00000435823 GAD1Q99259 594 aa12.57□□□□□ -0.4
COL28A1-203ENST00000435823 ACO2Q99798 780 aaKnown RBP12.57□□□□□ -0.4
COL28A1-203ENST00000435823 TCHPQ9BT92 498 aa12.57□□□□□ -0.4
COL28A1-203ENST00000435823 TARS2Q9BW92 718 aaKnown RBP12.57□□□□□ -0.4
COL28A1-203ENST00000435823 SCAND2PQ9GZW5 306 aaPredicted RBP12.57□□□□□ -0.4
COL28A1-203ENST00000435823 GBP3Q9H0R5 595 aa12.57□□□□□ -0.4
COL28A1-203ENST00000435823 TNMDQ9H2S6 317 aa12.57□□□□□ -0.4
COL28A1-203ENST00000435823 NSUN3Q9H649 340 aaKnown RBP12.57□□□□□ -0.4
COL28A1-203ENST00000435823 NRDE2Q9H7Z3 1164 aa12.57□□□□□ -0.4
COL28A1-203ENST00000435823 MAGEF1Q9HAY2 307 aa12.57□□□□□ -0.4
COL28A1-203ENST00000435823 PRRC2BQ5JSZ5 2229 aaKnown RBP12.57□□□□□ -0.4
COL28A1-203ENST00000435823 MYMKA6NI61 221 aa12.56□□□□□ -0.4
COL28A1-203ENST00000435823 INPPL1O15357 1258 aa12.56□□□□□ -0.4
COL28A1-203ENST00000435823 NR1I2O75469 434 aa12.56□□□□□ -0.4
COL28A1-203ENST00000435823 CSPG5O95196 566 aa12.56□□□□□ -0.4
COL28A1-203ENST00000435823 IDEP14735 1019 aa12.56□□□□□ -0.4
COL28A1-203ENST00000435823 GAP43P17677 238 aa12.56□□□□□ -0.4
COL28A1-203ENST00000435823 PBX3P40426 434 aa12.56□□□□□ -0.4
COL28A1-203ENST00000435823 AMPD3Q01432 767 aa12.56□□□□□ -0.4
COL28A1-203ENST00000435823 PLCB3Q01970 1234 aa12.56□□□□□ -0.4
COL28A1-203ENST00000435823 ZNF568Q3ZCX4 644 aa12.56□□□□□ -0.4
COL28A1-203ENST00000435823 RESP18Q5W5W9 173 aa12.56□□□□□ -0.4
COL28A1-203ENST00000435823 ZPBP2Q6X784 338 aa12.56□□□□□ -0.4
COL28A1-203ENST00000435823 SLC39A11Q8N1S5 342 aa12.56□□□□□ -0.4
COL28A1-203ENST00000435823 LEO1Q8WVC0 666 aaPredicted RBP12.56□□□□□ -0.4
COL28A1-203ENST00000435823 MRPS27Q92552 414 aaKnown RBP12.56□□□□□ -0.4
COL28A1-203ENST00000435823 KCNN1Q92952 543 aa12.56□□□□□ -0.4
COL28A1-203ENST00000435823 TMEM169Q96HH4 297 aa12.56□□□□□ -0.4
COL28A1-203ENST00000435823 ZFP42Q96MM3 310 aa12.56□□□□□ -0.4
COL28A1-203ENST00000435823 TMEM175Q9BSA9 504 aa12.56□□□□□ -0.4
COL28A1-203ENST00000435823 TLR9Q9NR96 1032 aa12.56□□□□□ -0.4
COL28A1-203ENST00000435823 SNTG2Q9NY99 539 aa12.56□□□□□ -0.4
COL28A1-203ENST00000435823 SEL1LQ9UBV2 794 aa12.56□□□□□ -0.4
COL28A1-203ENST00000435823 LZTS1Q9Y250 596 aa12.56□□□□□ -0.4
COL28A1-203ENST00000435823 POLR2DO15514 142 aaKnown RBP12.55□□□□□ -0.4
COL28A1-203ENST00000435823 TOM1L1O75674 476 aa12.55□□□□□ -0.4
COL28A1-203ENST00000435823 GALTP07902 379 aa12.55□□□□□ -0.4
COL28A1-203ENST00000435823 MCF2P10911 925 aa12.55□□□□□ -0.4
COL28A1-203ENST00000435823 ANP32AP39687 249 aaKnown RBP12.55□□□□□ -0.4
COL28A1-203ENST00000435823 MATR3P43243 847 aaKnown RBP eCLIP12.55□□□□□ -0.4
COL28A1-203ENST00000435823 SCNN1GP51170 649 aa12.55□□□□□ -0.4
COL28A1-203ENST00000435823 AFF1P51825 1210 aaKnown RBP12.55□□□□□ -0.4
COL28A1-203ENST00000435823 YARSP54577 528 aaKnown RBP12.55□□□□□ -0.4
COL28A1-203ENST00000435823 GRIK3Q13003 919 aa12.55□□□□□ -0.4
COL28A1-203ENST00000435823 E2F4Q16254 413 aa12.55□□□□□ -0.4
COL28A1-203ENST00000435823 ADALQ6DHV7 355 aa12.55□□□□□ -0.4
COL28A1-203ENST00000435823 PDE12Q6L8Q7 609 aaKnown RBP12.55□□□□□ -0.4
COL28A1-203ENST00000435823 MPZL3Q6UWV2 235 aa12.55□□□□□ -0.4
COL28A1-203ENST00000435823 ZBTB33Q86T24 672 aa12.55□□□□□ -0.4
COL28A1-203ENST00000435823 SFR1Q86XK3 245 aa12.55□□□□□ -0.4
COL28A1-203ENST00000435823 ZNF280BQ86YH2 543 aa12.55□□□□□ -0.4
COL28A1-203ENST00000435823 PHF6Q8IWS0 365 aaKnown RBP eCLIP12.55□□□□□ -0.4
COL28A1-203ENST00000435823 CCDC65Q8IXS2 484 aa12.55□□□□□ -0.4
COL28A1-203ENST00000435823 MICAL1Q8TDZ2 1067 aa12.55□□□□□ -0.4
COL28A1-203ENST00000435823 DNAJC19Q96DA6 116 aa12.55□□□□□ -0.4
COL28A1-203ENST00000435823 CCDC94Q9BW85 323 aaPredicted RBP12.55□□□□□ -0.4
COL28A1-203ENST00000435823 CDT1Q9H211 546 aa12.55□□□□□ -0.4
COL28A1-203ENST00000435823 TOPORSQ9NS56 1045 aaPredicted RBP12.55□□□□□ -0.4
COL28A1-203ENST00000435823 KLK14Q9P0G3 267 aa12.55□□□□□ -0.4
COL28A1-203ENST00000435823 ANKFY1Q9P2R3 1169 aa12.55□□□□□ -0.4
COL28A1-203ENST00000435823 THEGQ9P2T0 379 aa12.55□□□□□ -0.4
COL28A1-203ENST00000435823 KCNH3Q9ULD8 1083 aa12.55□□□□□ -0.4
COL28A1-203ENST00000435823 TBX20Q9UMR3 447 aa12.55□□□□□ -0.4
COL28A1-203ENST00000435823 GDAQ9Y2T3 454 aa12.55□□□□□ -0.4
COL28A1-203ENST00000435823 PLXNA4Q9HCM2 1894 aa12.55□□□□□ -0.4
COL28A1-203ENST00000435823 NT5C1B-RDH14C9J2C7 533 aa12.54□□□□□ -0.4
COL28A1-203ENST00000435823 HNRNPDLO14979 420 aaKnown RBP12.54□□□□□ -0.4
COL28A1-203ENST00000435823 RECQL4O94761 1208 aa12.54□□□□□ -0.4
COL28A1-203ENST00000435823 DDHD2O94830 711 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms