RNA–Protein interactions for RNA: ENST00000435425.1

SHH-203, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 807 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-203ENST00000435425 ZBTB45Q96K62 511 aaPredicted RBP20.48■□□□□ 0.87
SHH-203ENST00000435425 ZFP42Q96MM3 310 aa20.48■□□□□ 0.87
SHH-203ENST00000435425 ZNF558Q96NG5 402 aa20.48■□□□□ 0.87
SHH-203ENST00000435425 FAM193BQ96PV7 902 aaPredicted RBP20.48■□□□□ 0.87
SHH-203ENST00000435425 LRRC27Q9C0I9 530 aa20.48■□□□□ 0.87
SHH-203ENST00000435425 TNMDQ9H2S6 317 aa20.48■□□□□ 0.87
SHH-203ENST00000435425 NRDE2Q9H7Z3 1164 aa20.48■□□□□ 0.87
SHH-203ENST00000435425 PANK4Q9NVE7 773 aa20.48■□□□□ 0.87
SHH-203ENST00000435425 SERTAD1Q9UHV2 236 aa20.48■□□□□ 0.87
SHH-203ENST00000435425 PLAGL2Q9UPG8 496 aa20.48■□□□□ 0.87
SHH-203ENST00000435425 GDAQ9Y2T3 454 aa20.48■□□□□ 0.87
SHH-203ENST00000435425 ARL5CA6NH57 179 aa20.47■□□□□ 0.87
SHH-203ENST00000435425 NT5C1B-RDH14C9J2C7 533 aa20.47■□□□□ 0.87
SHH-203ENST00000435425 PFKFB1P16118 471 aa20.47■□□□□ 0.87
SHH-203ENST00000435425 AFMP43652 599 aa20.47■□□□□ 0.87
SHH-203ENST00000435425 SCNN1GP51170 649 aa20.47■□□□□ 0.87
SHH-203ENST00000435425 BCAR1P56945 870 aa20.47■□□□□ 0.87
SHH-203ENST00000435425 OSTNP61366 133 aa20.47■□□□□ 0.87
SHH-203ENST00000435425 AMPD3Q01432 767 aa20.47■□□□□ 0.87
SHH-203ENST00000435425 PTPROQ16827 1216 aa20.47■□□□□ 0.87
SHH-203ENST00000435425 ZC2HC1CQ53FD0 456 aaPredicted RBP20.47■□□□□ 0.87
SHH-203ENST00000435425 HERC4Q5GLZ8 1057 aaPredicted RBP20.47■□□□□ 0.87
SHH-203ENST00000435425 APBB1IPQ7Z5R6 666 aaPredicted RBP20.47■□□□□ 0.87
SHH-203ENST00000435425 ZNF280BQ86YH2 543 aa20.47■□□□□ 0.87
SHH-203ENST00000435425 MRPL44Q9H9J2 332 aaKnown RBP20.47■□□□□ 0.87
SHH-203ENST00000435425 KBTBD4Q9NVX7 518 aa20.47■□□□□ 0.87
SHH-203ENST00000435425 MIOSQ9NXC5 875 aa20.47■□□□□ 0.87
SHH-203ENST00000435425 KANSL3Q9P2N6 904 aa20.47■□□□□ 0.87
SHH-203ENST00000435425 ANKFY1Q9P2R3 1169 aa20.47■□□□□ 0.87
SHH-203ENST00000435425 TBX20Q9UMR3 447 aa20.47■□□□□ 0.87
SHH-203ENST00000435425 GIT1Q9Y2X7 761 aa20.47■□□□□ 0.87
SHH-203ENST00000435425 ATG2AQ2TAZ0 1938 aa20.47■□□□□ 0.87
SHH-203ENST00000435425 FGF18O76093 207 aa20.46■□□□□ 0.87
SHH-203ENST00000435425 DDHD2O94830 711 aa20.46■□□□□ 0.87
SHH-203ENST00000435425 GAP43P17677 238 aa20.46■□□□□ 0.87
SHH-203ENST00000435425 POU3F3P20264 500 aaPredicted RBP20.46■□□□□ 0.87
SHH-203ENST00000435425 CASP1P29466 404 aa20.46■□□□□ 0.87
SHH-203ENST00000435425 CEP57L1Q8IYX8 460 aa20.46■□□□□ 0.87
SHH-203ENST00000435425 FSIP1Q8NA03 581 aa20.46■□□□□ 0.87
SHH-203ENST00000435425 SPPL3Q8TCT6 385 aa20.46■□□□□ 0.87
SHH-203ENST00000435425 POF1BQ8WVV4 589 aa20.46■□□□□ 0.87
SHH-203ENST00000435425 MRPL38Q96DV4 380 aaKnown RBP20.46■□□□□ 0.87
SHH-203ENST00000435425 RPS6KC1Q96S38 1066 aa20.46■□□□□ 0.87
SHH-203ENST00000435425 FIZ1Q96SL8 496 aa20.46■□□□□ 0.87
SHH-203ENST00000435425 CDT1Q9H211 546 aa20.46■□□□□ 0.87
SHH-203ENST00000435425 DNAJB4Q9UDY4 337 aa20.46■□□□□ 0.87
SHH-203ENST00000435425 TRIP11Q15643 1979 aa20.46■□□□□ 0.87
SHH-203ENST00000435425 PRRC2BQ5JSZ5 2229 aaKnown RBP20.46■□□□□ 0.87
SHH-203ENST00000435425 RECQL4O94761 1208 aa20.45■□□□□ 0.86
SHH-203ENST00000435425 DNAJB1P25685 340 aa20.45■□□□□ 0.86
SHH-203ENST00000435425 ALDH7A1P49419 539 aaKnown RBP20.45■□□□□ 0.86
SHH-203ENST00000435425 LIG4P49917 911 aa20.45■□□□□ 0.86
SHH-203ENST00000435425 ASIC1P78348 528 aa20.45■□□□□ 0.86
SHH-203ENST00000435425 SKIV2LQ15477 1246 aaKnown RBP20.45■□□□□ 0.86
SHH-203ENST00000435425 CSPP1Q1MSJ5 1256 aa20.45■□□□□ 0.86
SHH-203ENST00000435425 MPZL3Q6UWV2 235 aa20.45■□□□□ 0.86
SHH-203ENST00000435425 CCDC65Q8IXS2 484 aa20.45■□□□□ 0.86
SHH-203ENST00000435425 GRAMD1CQ8IYS0 662 aa20.45■□□□□ 0.86
SHH-203ENST00000435425 CEP120Q8N960 986 aa20.45■□□□□ 0.86
SHH-203ENST00000435425 RSPH1Q8WYR4 309 aa20.45■□□□□ 0.86
SHH-203ENST00000435425 PYM1Q9BRP8 204 aaKnown RBP20.45■□□□□ 0.86
SHH-203ENST00000435425 TRIM9Q9C026 710 aa20.45■□□□□ 0.86
SHH-203ENST00000435425 BLZF1Q9H2G9 400 aa20.45■□□□□ 0.86
SHH-203ENST00000435425 PTPRHQ9HD43 1115 aa20.45■□□□□ 0.86
SHH-203ENST00000435425 SPG21Q9NZD8 308 aa20.45■□□□□ 0.86
SHH-203ENST00000435425 LMCD1Q9NZU5 365 aa20.45■□□□□ 0.86
SHH-203ENST00000435425 CIZ1Q9ULV3 898 aaPredicted RBP20.45■□□□□ 0.86
SHH-203ENST00000435425 B4GALT3O60512 393 aa20.44■□□□□ 0.86
SHH-203ENST00000435425 GTF2BQ00403 316 aa20.44■□□□□ 0.86
SHH-203ENST00000435425 SEZ6Q53EL9 994 aa20.44■□□□□ 0.86
SHH-203ENST00000435425 ZPBP2Q6X784 338 aa20.44■□□□□ 0.86
SHH-203ENST00000435425 ZNF720Q7Z2F6 126 aa20.44■□□□□ 0.86
SHH-203ENST00000435425 LMAN2LQ9H0V9 348 aa20.44■□□□□ 0.86
SHH-203ENST00000435425 CXCL16Q9H2A7 254 aa20.44■□□□□ 0.86
SHH-203ENST00000435425 MAGEF1Q9HAY2 307 aa20.44■□□□□ 0.86
SHH-203ENST00000435425 SEL1LQ9UBV2 794 aa20.44■□□□□ 0.86
SHH-203ENST00000435425 CDH23Q9H251 3354 aa20.43■□□□□ 0.86
SHH-203ENST00000435425 GOLGA6L4A6NEF3 574 aa20.43■□□□□ 0.86
SHH-203ENST00000435425 HNRNPDLO14979 420 aaKnown RBP20.43■□□□□ 0.86
SHH-203ENST00000435425 TOM1L1O75674 476 aa20.43■□□□□ 0.86
SHH-203ENST00000435425 GCNT3O95395 438 aa20.43■□□□□ 0.86
SHH-203ENST00000435425 GALTP07902 379 aa20.43■□□□□ 0.86
SHH-203ENST00000435425 MCF2P10911 925 aa20.43■□□□□ 0.86
SHH-203ENST00000435425 PROZP22891 400 aa20.43■□□□□ 0.86
SHH-203ENST00000435425 SYKP43405 635 aa20.43■□□□□ 0.86
SHH-203ENST00000435425 SLC11A1P49279 550 aa20.43■□□□□ 0.86
SHH-203ENST00000435425 NDUFA8P51970 172 aa20.43■□□□□ 0.86
SHH-203ENST00000435425 COASYQ13057 564 aa20.43■□□□□ 0.86
SHH-203ENST00000435425 SLC39A11Q8N1S5 342 aa20.43■□□□□ 0.86
SHH-203ENST00000435425 SLC17A8Q8NDX2 589 aa20.43■□□□□ 0.86
SHH-203ENST00000435425 MICAL1Q8TDZ2 1067 aa20.43■□□□□ 0.86
SHH-203ENST00000435425 MRPS27Q92552 414 aaKnown RBP20.43■□□□□ 0.86
SHH-203ENST00000435425 HPS3Q969F9 1004 aa20.43■□□□□ 0.86
SHH-203ENST00000435425 C7orf25Q9BPX7 421 aa20.43■□□□□ 0.86
SHH-203ENST00000435425 CCDC94Q9BW85 323 aaPredicted RBP20.43■□□□□ 0.86
SHH-203ENST00000435425 HPSEQ9Y251 543 aa20.43■□□□□ 0.86
SHH-203ENST00000435425 A0A1W2PQ27 194 aa20.42■□□□□ 0.86
SHH-203ENST00000435425 A0A1W2PQ64 194 aa20.42■□□□□ 0.86
SHH-203ENST00000435425 A0A1W2PQD8 194 aa20.42■□□□□ 0.86
SHH-203ENST00000435425 ABLIM1O14639 778 aa20.42■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms