RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 DSG1Q02413 1049 aa3.14□□□□□ -1.91
VPS13A-208ENST00000423463 ESRP1Q6NXG1 681 aaKnown RBP3.14□□□□□ -1.91
VPS13A-208ENST00000423463 CHTF18Q8WVB6 975 aa3.14□□□□□ -1.91
VPS13A-208ENST00000423463 YTHDC1Q96MU7 727 aaKnown RBP3.14□□□□□ -1.91
VPS13A-208ENST00000423463 GPR101Q96P66 508 aaPredicted RBP3.14□□□□□ -1.91
VPS13A-208ENST00000423463 ELF4Q99607 663 aaPredicted RBP3.14□□□□□ -1.91
VPS13A-208ENST00000423463 SLKQ9H2G2 1235 aaPredicted RBP3.14□□□□□ -1.91
VPS13A-208ENST00000423463 PRKAB1Q9Y478 270 aa3.14□□□□□ -1.91
VPS13A-208ENST00000423463 LRP5O75197 1615 aa3.14□□□□□ -1.91
VPS13A-208ENST00000423463 CICQ96RK0 1608 aaPredicted RBP3.14□□□□□ -1.91
VPS13A-208ENST00000423463 CASZ1Q86V15 1759 aa3.14□□□□□ -1.91
VPS13A-208ENST00000423463 TAF1LQ8IZX4 1826 aa3.14□□□□□ -1.91
VPS13A-208ENST00000423463 QSER1Q2KHR3 1735 aa3.14□□□□□ -1.91
VPS13A-208ENST00000423463 GSG1L2A8MUP6 293 aa3.14□□□□□ -1.91
VPS13A-208ENST00000423463 H7C1D1 291 aa3.14□□□□□ -1.91
VPS13A-208ENST00000423463 B4GALT3O60512 393 aa3.14□□□□□ -1.91
VPS13A-208ENST00000423463 GAS7O60861 476 aa3.14□□□□□ -1.91
VPS13A-208ENST00000423463 CAMTA2O94983 1202 aa3.14□□□□□ -1.91
VPS13A-208ENST00000423463 ZNF888P0CJ79 500 aaPredicted RBP3.14□□□□□ -1.91
VPS13A-208ENST00000423463 RGS3P49796 1198 aa3.14□□□□□ -1.91
VPS13A-208ENST00000423463 NFIXQ14938 502 aa3.14□□□□□ -1.91
VPS13A-208ENST00000423463 TAF7LQ5H9L4 462 aa3.14□□□□□ -1.91
VPS13A-208ENST00000423463 TTLL10Q6ZVT0 673 aa3.14□□□□□ -1.91
VPS13A-208ENST00000423463 OTOP2Q7RTS6 562 aa3.14□□□□□ -1.91
VPS13A-208ENST00000423463 FOXRED1Q96CU9 486 aaPredicted RBP3.14□□□□□ -1.91
VPS13A-208ENST00000423463 TMEM168Q9H0V1 697 aa3.14□□□□□ -1.91
VPS13A-208ENST00000423463 MYH16Q9H6N6 1097 aa3.14□□□□□ -1.91
VPS13A-208ENST00000423463 DDX21Q9NR30 783 aaKnown RBP eCLIP3.14□□□□□ -1.91
VPS13A-208ENST00000423463 OXSMQ9NWU1 459 aa3.14□□□□□ -1.91
VPS13A-208ENST00000423463 DBF4Q9UBU7 674 aaPredicted RBP3.14□□□□□ -1.91
VPS13A-208ENST00000423463 B4GALT6Q9UBX8 382 aa3.14□□□□□ -1.91
VPS13A-208ENST00000423463 MAGEL2Q9UJ55 1249 aa3.14□□□□□ -1.91
VPS13A-208ENST00000423463 SIPA1L3O60292 1781 aaPredicted RBP3.14□□□□□ -1.91
VPS13A-208ENST00000423463 UBR2Q8IWV8 1755 aa3.14□□□□□ -1.91
VPS13A-208ENST00000423463 MROH6A6NGR9 719 aa3.13□□□□□ -1.91
VPS13A-208ENST00000423463 NPTXRO95502 500 aa3.13□□□□□ -1.91
VPS13A-208ENST00000423463 F2P00734 622 aa3.13□□□□□ -1.91
VPS13A-208ENST00000423463 SERPINB2P05120 415 aa3.13□□□□□ -1.91
VPS13A-208ENST00000423463 PIP4K2AP48426 406 aaPredicted RBP3.13□□□□□ -1.91
VPS13A-208ENST00000423463 CTSWP56202 376 aa3.13□□□□□ -1.91
VPS13A-208ENST00000423463 TGFB2P61812 414 aa3.13□□□□□ -1.91
VPS13A-208ENST00000423463 HERVK_113P62684 666 aa3.13□□□□□ -1.91
VPS13A-208ENST00000423463 KRT24Q2M2I5 525 aa3.13□□□□□ -1.91
VPS13A-208ENST00000423463 WDR72Q3MJ13 1102 aa3.13□□□□□ -1.91
VPS13A-208ENST00000423463 CCDC30Q5VVM6 783 aa3.13□□□□□ -1.91
VPS13A-208ENST00000423463 RTN4RL1Q86UN2 441 aaPredicted RBP3.13□□□□□ -1.91
VPS13A-208ENST00000423463 C8orf58Q8NAV2 365 aa3.13□□□□□ -1.91
VPS13A-208ENST00000423463 MBD6Q96DN6 1003 aa3.13□□□□□ -1.91
VPS13A-208ENST00000423463 LCORQ96JN0 433 aaPredicted RBP3.13□□□□□ -1.91
VPS13A-208ENST00000423463 WRNIP1Q96S55 665 aa3.13□□□□□ -1.91
VPS13A-208ENST00000423463 POFUT1Q9H488 388 aa3.13□□□□□ -1.91
VPS13A-208ENST00000423463 TOMM22Q9NS69 142 aa3.13□□□□□ -1.91
VPS13A-208ENST00000423463 HYPKQ9NX55 129 aa3.13□□□□□ -1.91
VPS13A-208ENST00000423463 GALNT8Q9NY28 637 aa3.13□□□□□ -1.91
VPS13A-208ENST00000423463 ZKSCAN5Q9Y2L8 839 aa3.13□□□□□ -1.91
VPS13A-208ENST00000423463 TJP1Q07157 1748 aa3.13□□□□□ -1.91
VPS13A-208ENST00000423463 UBR3Q6ZT12 1888 aa3.13□□□□□ -1.91
VPS13A-208ENST00000423463 POLRMTO00411 1230 aaKnown RBP3.13□□□□□ -1.91
VPS13A-208ENST00000423463 ELL2O00472 640 aaPredicted RBP3.13□□□□□ -1.91
VPS13A-208ENST00000423463 MYL6BP14649 208 aa3.13□□□□□ -1.91
VPS13A-208ENST00000423463 ADCYAP1R1P41586 468 aa3.13□□□□□ -1.91
VPS13A-208ENST00000423463 KCNQ1P51787 676 aa3.13□□□□□ -1.91
VPS13A-208ENST00000423463 CD83Q01151 205 aa3.13□□□□□ -1.91
VPS13A-208ENST00000423463 DDR1Q08345 913 aa3.13□□□□□ -1.91
VPS13A-208ENST00000423463 ZNF174Q15697 407 aa3.13□□□□□ -1.91
VPS13A-208ENST00000423463 FAM26FQ5R3K3 315 aa3.13□□□□□ -1.91
VPS13A-208ENST00000423463 TBC1D9BQ66K14 1250 aa3.13□□□□□ -1.91
VPS13A-208ENST00000423463 KIF6Q6ZMV9 814 aa3.13□□□□□ -1.91
VPS13A-208ENST00000423463 COPS6Q7L5N1 327 aa3.13□□□□□ -1.91
VPS13A-208ENST00000423463 THNSL2Q86YJ6 484 aa3.13□□□□□ -1.91
VPS13A-208ENST00000423463 KBTBD2Q8IY47 623 aa3.13□□□□□ -1.91
VPS13A-208ENST00000423463 PPM1KQ8N3J5 372 aa3.13□□□□□ -1.91
VPS13A-208ENST00000423463 PTPN18Q99952 460 aa3.13□□□□□ -1.91
VPS13A-208ENST00000423463 BDH2Q9BUT1 245 aa3.13□□□□□ -1.91
VPS13A-208ENST00000423463 KIAA1683Q9H0B3 1180 aa3.13□□□□□ -1.91
VPS13A-208ENST00000423463 SPTLC3Q9NUV7 552 aa3.13□□□□□ -1.91
VPS13A-208ENST00000423463 DLG5Q8TDM6 1919 aa3.13□□□□□ -1.91
VPS13A-208ENST00000423463 MYH14Q7Z406 1995 aaKnown RBP3.13□□□□□ -1.91
VPS13A-208ENST00000423463 MAP3K15Q6ZN16 1313 aa3.13□□□□□ -1.91
VPS13A-208ENST00000423463 ZNF521Q96K83 1311 aa3.13□□□□□ -1.91
VPS13A-208ENST00000423463 COL5A3P25940 1745 aaPredicted RBP3.13□□□□□ -1.91
VPS13A-208ENST00000423463 H0Y858 1186 aa3.13□□□□□ -1.91
VPS13A-208ENST00000423463 GOLGA6L22H0YM25 854 aa3.13□□□□□ -1.91
VPS13A-208ENST00000423463 B4GALT4O60513 344 aa3.13□□□□□ -1.91
VPS13A-208ENST00000423463 CYP7B1O75881 506 aa3.13□□□□□ -1.91
VPS13A-208ENST00000423463 APOL3O95236 402 aa3.13□□□□□ -1.91
VPS13A-208ENST00000423463 POU3F2P20265 443 aaPredicted RBP3.13□□□□□ -1.91
VPS13A-208ENST00000423463 ID4P47928 161 aa3.13□□□□□ -1.91
VPS13A-208ENST00000423463 STAT5BP51692 787 aa3.13□□□□□ -1.91
VPS13A-208ENST00000423463 IL2P60568 153 aa3.13□□□□□ -1.91
VPS13A-208ENST00000423463 STRN3Q13033 797 aa3.13□□□□□ -1.91
VPS13A-208ENST00000423463 ARHGAP44Q17R89 818 aa3.13□□□□□ -1.91
VPS13A-208ENST00000423463 TWISTNBQ3B726 338 aaPredicted RBP3.13□□□□□ -1.91
VPS13A-208ENST00000423463 HSP90AB3PQ58FF7 597 aa3.13□□□□□ -1.91
VPS13A-208ENST00000423463 RNF187Q5TA31 235 aaPredicted RBP3.13□□□□□ -1.91
VPS13A-208ENST00000423463 PRAMEF9Q5VWM5 478 aa3.13□□□□□ -1.91
VPS13A-208ENST00000423463 KANK2Q63ZY3 851 aa3.13□□□□□ -1.91
VPS13A-208ENST00000423463 RNF180Q86T96 592 aa3.13□□□□□ -1.91
VPS13A-208ENST00000423463 TSPYL6Q8N831 410 aa3.13□□□□□ -1.91
VPS13A-208ENST00000423463 SMC1BQ8NDV3 1235 aa3.13□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 121.3 ms