RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 PTPN5P54829 565 aa12.83□□□□□ -0.35
USP4-204ENST00000416417 NCBP1Q09161 790 aaKnown RBP12.83□□□□□ -0.35
USP4-204ENST00000416417 PPFIBP1Q86W92 1011 aa12.83□□□□□ -0.35
USP4-204ENST00000416417 PALB2Q86YC2 1186 aa12.83□□□□□ -0.35
USP4-204ENST00000416417 ST13P5Q8NFI4 369 aaPredicted RBP12.83□□□□□ -0.35
USP4-204ENST00000416417 HASPINQ8TF76 798 aa12.83□□□□□ -0.35
USP4-204ENST00000416417 RPS6KC1Q96S38 1066 aa12.83□□□□□ -0.35
USP4-204ENST00000416417 PAAF1Q9BRP4 392 aa12.83□□□□□ -0.35
USP4-204ENST00000416417 UBN1Q9NPG3 1134 aa12.83□□□□□ -0.35
USP4-204ENST00000416417 CCDC195A0A1B0GUA6 201 aa12.83□□□□□ -0.36
USP4-204ENST00000416417 H0Y858 1186 aa12.83□□□□□ -0.36
USP4-204ENST00000416417 N4BP1O75113 896 aaKnown RBP12.83□□□□□ -0.36
USP4-204ENST00000416417 GLUD2P49448 558 aa12.83□□□□□ -0.36
USP4-204ENST00000416417 KIAA0319Q5VV43 1072 aa12.83□□□□□ -0.36
USP4-204ENST00000416417 SLC27A1Q6PCB7 646 aa12.83□□□□□ -0.36
USP4-204ENST00000416417 ZDHHC14Q8IZN3 488 aa12.83□□□□□ -0.36
USP4-204ENST00000416417 TMEM105Q8N8V8 129 aa12.83□□□□□ -0.36
USP4-204ENST00000416417 CCDC51Q96ER9 411 aa12.83□□□□□ -0.36
USP4-204ENST00000416417 GIT1Q9Y2X7 761 aa12.83□□□□□ -0.36
USP4-204ENST00000416417 CARNS1A5YM72 827 aa12.82□□□□□ -0.36
USP4-204ENST00000416417 INPPL1O15357 1258 aa12.82□□□□□ -0.36
USP4-204ENST00000416417 EFEMP2O95967 443 aa12.82□□□□□ -0.36
USP4-204ENST00000416417 POU5F1BQ06416 359 aa12.82□□□□□ -0.36
USP4-204ENST00000416417 ECM1Q16610 540 aa12.82□□□□□ -0.36
USP4-204ENST00000416417 PRSS55Q6UWB4 352 aaPredicted RBP12.82□□□□□ -0.36
USP4-204ENST00000416417 CCDC149Q6ZUS6 474 aa12.82□□□□□ -0.36
USP4-204ENST00000416417 RNF168Q8IYW5 571 aaPredicted RBP12.82□□□□□ -0.36
USP4-204ENST00000416417 RSAD2Q8WXG1 361 aa12.82□□□□□ -0.36
USP4-204ENST00000416417 C8orf76Q96K31 380 aa12.82□□□□□ -0.36
USP4-204ENST00000416417 KIFC3Q9BVG8 833 aa12.82□□□□□ -0.36
USP4-204ENST00000416417 SNTG2Q9NY99 539 aa12.82□□□□□ -0.36
USP4-204ENST00000416417 PLXNA3P51805 1871 aa12.81□□□□□ -0.36
USP4-204ENST00000416417 A0A1B0GUA9 196 aa12.81□□□□□ -0.36
USP4-204ENST00000416417 CASTOR2A6NHX0 329 aa12.81□□□□□ -0.36
USP4-204ENST00000416417 GLUD1P00367 558 aa12.81□□□□□ -0.36
USP4-204ENST00000416417 OR52Z1P0C646 297 aa12.81□□□□□ -0.36
USP4-204ENST00000416417 IGFBP6P24592 240 aaPredicted RBP12.81□□□□□ -0.36
USP4-204ENST00000416417 DSG1Q02413 1049 aa12.81□□□□□ -0.36
USP4-204ENST00000416417 SAFBQ15424 915 aaKnown RBP eCLIP12.81□□□□□ -0.36
USP4-204ENST00000416417 TMEM132AQ24JP5 1023 aa12.81□□□□□ -0.36
USP4-204ENST00000416417 EEF1DP3Q658K8 133 aa12.81□□□□□ -0.36
USP4-204ENST00000416417 FUT10Q6P4F1 479 aa12.81□□□□□ -0.36
USP4-204ENST00000416417 PADI6Q6TGC4 694 aa12.81□□□□□ -0.36
USP4-204ENST00000416417 NOSTRINQ8IVI9 506 aa12.81□□□□□ -0.36
USP4-204ENST00000416417 UBALD2Q8IYN6 164 aa12.81□□□□□ -0.36
USP4-204ENST00000416417 RIN2Q8WYP3 895 aaPredicted RBP12.81□□□□□ -0.36
USP4-204ENST00000416417 ATOH1Q92858 354 aaPredicted RBP12.81□□□□□ -0.36
USP4-204ENST00000416417 COLEC11Q9BWP8 271 aa12.81□□□□□ -0.36
USP4-204ENST00000416417 NFKBIZQ9BYH8 718 aa12.81□□□□□ -0.36
USP4-204ENST00000416417 PDZD7Q9H5P4 517 aa12.81□□□□□ -0.36
USP4-204ENST00000416417 TUFT1Q9NNX1 390 aa12.81□□□□□ -0.36
USP4-204ENST00000416417 LIMCH1Q9UPQ0 1083 aa12.81□□□□□ -0.36
USP4-204ENST00000416417 ARHGEF35A5YM69 484 aa12.8□□□□□ -0.36
USP4-204ENST00000416417 NARSO43776 548 aaKnown RBP12.8□□□□□ -0.36
USP4-204ENST00000416417 ADH1AP07327 375 aa12.8□□□□□ -0.36
USP4-204ENST00000416417 XRCC6P12956 609 aaKnown RBP eCLIP12.8□□□□□ -0.36
USP4-204ENST00000416417 GBP2P32456 591 aaPredicted RBP12.8□□□□□ -0.36
USP4-204ENST00000416417 PCBP1Q15365 356 aaKnown RBP eCLIP12.8□□□□□ -0.36
USP4-204ENST00000416417 TTC38Q5R3I4 469 aa12.8□□□□□ -0.36
USP4-204ENST00000416417 ZBTB8OSQ8IWT0 167 aa12.8□□□□□ -0.36
USP4-204ENST00000416417 PLCD3Q8N3E9 789 aa12.8□□□□□ -0.36
USP4-204ENST00000416417 FLCNQ8NFG4 579 aa12.8□□□□□ -0.36
USP4-204ENST00000416417 ZNF707Q96C28 371 aaPredicted RBP12.8□□□□□ -0.36
USP4-204ENST00000416417 ACSF2Q96CM8 615 aaPredicted RBP12.8□□□□□ -0.36
USP4-204ENST00000416417 NACC1Q96RE7 527 aa12.8□□□□□ -0.36
USP4-204ENST00000416417 POLR3CQ9BUI4 534 aaPredicted RBP12.8□□□□□ -0.36
USP4-204ENST00000416417 FZD8Q9H461 694 aa12.8□□□□□ -0.36
USP4-204ENST00000416417 KCNK12Q9HB15 430 aa12.8□□□□□ -0.36
USP4-204ENST00000416417 RXFP1Q9HBX9 757 aa12.8□□□□□ -0.36
USP4-204ENST00000416417 CHST7Q9NS84 486 aa12.8□□□□□ -0.36
USP4-204ENST00000416417 ADAM28Q9UKQ2 775 aa12.8□□□□□ -0.36
USP4-204ENST00000416417 USTQ9Y2C2 406 aa12.8□□□□□ -0.36
USP4-204ENST00000416417 DENND4AQ7Z401 1863 aa12.8□□□□□ -0.36
USP4-204ENST00000416417 C2orf16Q68DN1 1984 aa12.8□□□□□ -0.36
USP4-204ENST00000416417 PTGESO14684 152 aa12.79□□□□□ -0.36
USP4-204ENST00000416417 TGM5O43548 720 aa12.79□□□□□ -0.36
USP4-204ENST00000416417 NR1I2O75469 434 aa12.79□□□□□ -0.36
USP4-204ENST00000416417 TADA2AO75478 443 aa12.79□□□□□ -0.36
USP4-204ENST00000416417 KIF4AO95239 1232 aa12.79□□□□□ -0.36
USP4-204ENST00000416417 PRKCBP05771 671 aa12.79□□□□□ -0.36
USP4-204ENST00000416417 CCT6AP40227 531 aaKnown RBP12.79□□□□□ -0.36
USP4-204ENST00000416417 GRIK3Q13003 919 aa12.79□□□□□ -0.36
USP4-204ENST00000416417 RTP2Q5QGT7 225 aa12.79□□□□□ -0.36
USP4-204ENST00000416417 CDCA2Q69YH5 1023 aaPredicted RBP12.79□□□□□ -0.36
USP4-204ENST00000416417 OTOP3Q7RTS5 596 aa12.79□□□□□ -0.36
USP4-204ENST00000416417 CEP57Q86XR8 500 aa12.79□□□□□ -0.36
USP4-204ENST00000416417 HACE1Q8IYU2 909 aa12.79□□□□□ -0.36
USP4-204ENST00000416417 MCPH1Q8NEM0 835 aa12.79□□□□□ -0.36
USP4-204ENST00000416417 SMG7Q92540 1137 aaKnown RBP12.79□□□□□ -0.36
USP4-204ENST00000416417 MYADMQ96S97 322 aa12.79□□□□□ -0.36
USP4-204ENST00000416417 MFSD1Q9H3U5 465 aa12.79□□□□□ -0.36
USP4-204ENST00000416417 MYO10Q9HD67 2058 aa12.79□□□□□ -0.36
USP4-204ENST00000416417 PRMT7Q9NVM4 692 aaPredicted RBP12.79□□□□□ -0.36
USP4-204ENST00000416417 STK39Q9UEW8 545 aa12.79□□□□□ -0.36
USP4-204ENST00000416417 GDAQ9Y2T3 454 aa12.79□□□□□ -0.36
USP4-204ENST00000416417 TDRD15B5MCY1 1934 aaKnown RBP12.79□□□□□ -0.36
USP4-204ENST00000416417 PP2D1A8MPX8 630 aa12.78□□□□□ -0.36
USP4-204ENST00000416417 PI15O43692 258 aa12.78□□□□□ -0.36
USP4-204ENST00000416417 RECQL4O94761 1208 aa12.78□□□□□ -0.36
USP4-204ENST00000416417 CYP11B2P19099 503 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms