RNA–Protein interactions for RNA: ENST00000413186.6

SYNE1-211, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 4,860 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-211ENST00000413186 STAG3L1P0CL83 205 aa9.15□□□□□ -0.94
SYNE1-211ENST00000413186 CD58P19256 250 aa9.15□□□□□ -0.94
SYNE1-211ENST00000413186 PSMC6P62333 389 aa9.15□□□□□ -0.94
SYNE1-211ENST00000413186 TMEM132DQ14C87 1099 aa9.15□□□□□ -0.94
SYNE1-211ENST00000413186 ZBTB41Q5SVQ8 909 aa9.15□□□□□ -0.94
SYNE1-211ENST00000413186 SND1Q7KZF4 910 aaKnown RBP eCLIP9.15□□□□□ -0.94
SYNE1-211ENST00000413186 CCDC60Q8IWA6 550 aaPredicted RBP9.15□□□□□ -0.94
SYNE1-211ENST00000413186 DHX40Q8IX18 779 aaKnown RBP9.15□□□□□ -0.94
SYNE1-211ENST00000413186 GADD45GIP1Q8TAE8 222 aaPredicted RBP9.15□□□□□ -0.94
SYNE1-211ENST00000413186 MRPL47Q9HD33 250 aaKnown RBP9.15□□□□□ -0.94
SYNE1-211ENST00000413186 SETD4Q9NVD3 440 aa9.15□□□□□ -0.94
SYNE1-211ENST00000413186 ELF1P32519 619 aa9.15□□□□□ -0.94
SYNE1-211ENST00000413186 TSPY1Q01534 308 aa9.15□□□□□ -0.94
SYNE1-211ENST00000413186 IQCB1Q15051 598 aa9.15□□□□□ -0.94
SYNE1-211ENST00000413186 GBP7Q8N8V2 638 aaPredicted RBP9.15□□□□□ -0.94
SYNE1-211ENST00000413186 MAML3Q96JK9 1138 aa9.15□□□□□ -0.94
SYNE1-211ENST00000413186 HSD17B14Q9BPX1 270 aa9.15□□□□□ -0.94
SYNE1-211ENST00000413186 INTS2Q9H0H0 1204 aaKnown RBP9.15□□□□□ -0.94
SYNE1-211ENST00000413186 LRRC4Q9HBW1 653 aa9.15□□□□□ -0.94
SYNE1-211ENST00000413186 GPRC5CQ9NQ84 441 aa9.15□□□□□ -0.94
SYNE1-211ENST00000413186 BLOC1S4Q9NUP1 217 aa9.15□□□□□ -0.94
SYNE1-211ENST00000413186 RSPH10B2B2RC85 870 aa9.15□□□□□ -0.95
SYNE1-211ENST00000413186 PPP1R3GB7ZBB8 358 aa9.15□□□□□ -0.95
SYNE1-211ENST00000413186 HOXA2O43364 376 aa9.15□□□□□ -0.95
SYNE1-211ENST00000413186 MFAP3LO75121 409 aa9.15□□□□□ -0.95
SYNE1-211ENST00000413186 SLC10A3P09131 477 aa9.15□□□□□ -0.95
SYNE1-211ENST00000413186 RSPH10BP0C881 870 aa9.15□□□□□ -0.95
SYNE1-211ENST00000413186 TRIM49P0CI25 452 aa9.15□□□□□ -0.95
SYNE1-211ENST00000413186 TRIM49CP0CI26 452 aa9.15□□□□□ -0.95
SYNE1-211ENST00000413186 IFFO1Q0D2I5 559 aa9.15□□□□□ -0.95
SYNE1-211ENST00000413186 LAMTOR4Q0VGL1 99 aa9.15□□□□□ -0.95
SYNE1-211ENST00000413186 CRHR2Q13324 411 aa9.15□□□□□ -0.95
SYNE1-211ENST00000413186 BRD3Q15059 726 aa9.15□□□□□ -0.95
SYNE1-211ENST00000413186 PPTC7Q8NI37 304 aa9.15□□□□□ -0.95
SYNE1-211ENST00000413186 HEXIM2Q96MH2 286 aaKnown RBP9.15□□□□□ -0.95
SYNE1-211ENST00000413186 PURBQ96QR8 312 aaKnown RBP9.15□□□□□ -0.95
SYNE1-211ENST00000413186 COL24A1Q17RW2 1714 aa9.14□□□□□ -0.95
SYNE1-211ENST00000413186 DAPK3O43293 454 aa9.14□□□□□ -0.95
SYNE1-211ENST00000413186 GRK4P32298 578 aa9.14□□□□□ -0.95
SYNE1-211ENST00000413186 LMAN1P49257 510 aa9.14□□□□□ -0.95
SYNE1-211ENST00000413186 ACOT2P49753 483 aa9.14□□□□□ -0.95
SYNE1-211ENST00000413186 PPP2R5EQ16537 467 aa9.14□□□□□ -0.95
SYNE1-211ENST00000413186 MPZL3Q6UWV2 235 aa9.14□□□□□ -0.95
SYNE1-211ENST00000413186 SAPCD2Q86UD0 394 aa9.14□□□□□ -0.95
SYNE1-211ENST00000413186 NME8Q8N427 588 aa9.14□□□□□ -0.95
SYNE1-211ENST00000413186 LAMB2P55268 1798 aa9.14□□□□□ -0.95
SYNE1-211ENST00000413186 TAF1LQ8IZX4 1826 aa9.14□□□□□ -0.95
SYNE1-211ENST00000413186 MYO1FO00160 1098 aa9.14□□□□□ -0.95
SYNE1-211ENST00000413186 ATP9AO75110 1047 aa9.14□□□□□ -0.95
SYNE1-211ENST00000413186 PCBP1Q15365 356 aaKnown RBP eCLIP9.14□□□□□ -0.95
SYNE1-211ENST00000413186 SGSM1Q2NKQ1 1148 aa9.14□□□□□ -0.95
SYNE1-211ENST00000413186 KIAA1755Q5JYT7 1200 aa9.14□□□□□ -0.95
SYNE1-211ENST00000413186 CENPPQ6IPU0 288 aa9.14□□□□□ -0.95
SYNE1-211ENST00000413186 GPIHBP1Q8IV16 184 aa9.14□□□□□ -0.95
SYNE1-211ENST00000413186 TMEM35BQ8NCS4 154 aa9.14□□□□□ -0.95
SYNE1-211ENST00000413186 PYCARDQ9ULZ3 195 aa9.14□□□□□ -0.95
SYNE1-211ENST00000413186 ATP8B1O43520 1251 aa9.14□□□□□ -0.95
SYNE1-211ENST00000413186 ANXA13P27216 316 aa9.14□□□□□ -0.95
SYNE1-211ENST00000413186 AXLP30530 894 aa9.14□□□□□ -0.95
SYNE1-211ENST00000413186 MRPS9P82933 396 aaKnown RBP9.14□□□□□ -0.95
SYNE1-211ENST00000413186 FMR1Q06787 632 aaKnown RBP eCLIP9.14□□□□□ -0.95
SYNE1-211ENST00000413186 HYIQ5T013 277 aa9.14□□□□□ -0.95
SYNE1-211ENST00000413186 ZPBP2Q6X784 338 aa9.14□□□□□ -0.95
SYNE1-211ENST00000413186 SCARA5Q6ZMJ2 495 aa9.14□□□□□ -0.95
SYNE1-211ENST00000413186 TRIM50Q86XT4 487 aa9.14□□□□□ -0.95
SYNE1-211ENST00000413186 TTC16Q8NEE8 873 aa9.14□□□□□ -0.95
SYNE1-211ENST00000413186 NKX2-3Q8TAU0 364 aa9.14□□□□□ -0.95
SYNE1-211ENST00000413186 CREBZFQ9NS37 354 aa9.14□□□□□ -0.95
SYNE1-211ENST00000413186 USTQ9Y2C2 406 aa9.14□□□□□ -0.95
SYNE1-211ENST00000413186 TAF1P21675 1872 aa9.14□□□□□ -0.95
SYNE1-211ENST00000413186 DUSP11O75319 330 aaKnown RBP9.14□□□□□ -0.95
SYNE1-211ENST00000413186 FARP2O94887 1054 aaPredicted RBP9.14□□□□□ -0.95
SYNE1-211ENST00000413186 FMO5P49326 533 aa9.14□□□□□ -0.95
SYNE1-211ENST00000413186 E2F4Q16254 413 aa9.14□□□□□ -0.95
SYNE1-211ENST00000413186 GSTA5Q7RTV2 222 aa9.14□□□□□ -0.95
SYNE1-211ENST00000413186 CCDC26Q8TAB7 109 aa9.14□□□□□ -0.95
SYNE1-211ENST00000413186 CCDC113Q9H0I3 377 aa9.14□□□□□ -0.95
SYNE1-211ENST00000413186 STMN4Q9H169 189 aaPredicted RBP9.14□□□□□ -0.95
SYNE1-211ENST00000413186 TMEM8AQ9HCN3 771 aa9.14□□□□□ -0.95
SYNE1-211ENST00000413186 SPTLC3Q9NUV7 552 aa9.14□□□□□ -0.95
SYNE1-211ENST00000413186 HAUS2Q9NVX0 235 aa9.14□□□□□ -0.95
SYNE1-211ENST00000413186 TPX2Q9ULW0 747 aaKnown RBP9.14□□□□□ -0.95
SYNE1-211ENST00000413186 MYH7P12883 1935 aa9.13□□□□□ -0.95
SYNE1-211ENST00000413186 SOWAHBA6NEL2 793 aa9.13□□□□□ -0.95
SYNE1-211ENST00000413186 KIZQ2M2Z5 673 aa9.13□□□□□ -0.95
SYNE1-211ENST00000413186 NT5DC1Q5TFE4 455 aa9.13□□□□□ -0.95
SYNE1-211ENST00000413186 TRIM72Q6ZMU5 477 aa9.13□□□□□ -0.95
SYNE1-211ENST00000413186 CEP128Q6ZU80 1094 aa9.13□□□□□ -0.95
SYNE1-211ENST00000413186 ARFGAP2Q8N6H7 521 aa9.13□□□□□ -0.95
SYNE1-211ENST00000413186 CD99L2Q8TCZ2 262 aa9.13□□□□□ -0.95
SYNE1-211ENST00000413186 COPS5Q92905 334 aa9.13□□□□□ -0.95
SYNE1-211ENST00000413186 TNIP3Q96KP6 325 aa9.13□□□□□ -0.95
SYNE1-211ENST00000413186 NCAPGQ9BPX3 1015 aa9.13□□□□□ -0.95
SYNE1-211ENST00000413186 CARD6Q9BX69 1037 aa9.13□□□□□ -0.95
SYNE1-211ENST00000413186 COL1A2P08123 1366 aa9.13□□□□□ -0.95
SYNE1-211ENST00000413186 MYH1P12882 1939 aa9.13□□□□□ -0.95
SYNE1-211ENST00000413186 A0A1B0GTH6 734 aa9.13□□□□□ -0.95
SYNE1-211ENST00000413186 PNPLA4P41247 253 aa9.13□□□□□ -0.95
SYNE1-211ENST00000413186 SLC12A3P55017 1021 aa9.13□□□□□ -0.95
SYNE1-211ENST00000413186 RTP1P59025 263 aa9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms