RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 KANSL3Q9P2N6 904 aa21.02■□□□□ 0.96
SF3A1-202ENST00000411423 PRG3Q9Y2Y8 225 aaPredicted RBP21.02■□□□□ 0.96
SF3A1-202ENST00000411423 CCDC169A6NNP5 214 aa21.01■□□□□ 0.95
SF3A1-202ENST00000411423 N4BP3O15049 544 aa21.01■□□□□ 0.95
SF3A1-202ENST00000411423 CXCL14O95715 111 aa21.01■□□□□ 0.95
SF3A1-202ENST00000411423 SSBP05455 408 aaKnown RBP eCLIP21.01■□□□□ 0.95
SF3A1-202ENST00000411423 CTSAP10619 480 aa21.01■□□□□ 0.95
SF3A1-202ENST00000411423 COASYQ13057 564 aa21.01■□□□□ 0.95
SF3A1-202ENST00000411423 SMAD4Q13485 552 aaKnown RBP21.01■□□□□ 0.95
SF3A1-202ENST00000411423 KARSQ15046 597 aaKnown RBP21.01■□□□□ 0.95
SF3A1-202ENST00000411423 SMAD2Q15796 467 aaKnown RBP21.01■□□□□ 0.95
SF3A1-202ENST00000411423 SPECC1Q5M775 1068 aa21.01■□□□□ 0.95
SF3A1-202ENST00000411423 SMRP1Q8NCR6 262 aa21.01■□□□□ 0.95
SF3A1-202ENST00000411423 FEZF2Q8TBJ5 459 aa21.01■□□□□ 0.95
SF3A1-202ENST00000411423 RABGGTAQ92696 567 aa21.01■□□□□ 0.95
SF3A1-202ENST00000411423 AK8Q96MA6 479 aa21.01■□□□□ 0.95
SF3A1-202ENST00000411423 CDCA3Q99618 268 aaPredicted RBP21.01■□□□□ 0.95
SF3A1-202ENST00000411423 PARP2Q9UGN5 583 aa21.01■□□□□ 0.95
SF3A1-202ENST00000411423 FAN1Q9Y2M0 1017 aa21.01■□□□□ 0.95
SF3A1-202ENST00000411423 TDRD15B5MCY1 1934 aaKnown RBP21.01■□□□□ 0.95
SF3A1-202ENST00000411423 BDP1A6H8Y1 2624 aa21■□□□□ 0.95
SF3A1-202ENST00000411423 PTGESO14684 152 aa21■□□□□ 0.95
SF3A1-202ENST00000411423 CLASP2O75122 1294 aaKnown RBP21■□□□□ 0.95
SF3A1-202ENST00000411423 ALDH2P05091 517 aa21■□□□□ 0.95
SF3A1-202ENST00000411423 MARCKSP29966 332 aaPredicted RBP21■□□□□ 0.95
SF3A1-202ENST00000411423 OR1G1P47890 313 aa21■□□□□ 0.95
SF3A1-202ENST00000411423 ZP2Q05996 745 aa21■□□□□ 0.95
SF3A1-202ENST00000411423 SYCE2Q6PIF2 218 aa21■□□□□ 0.95
SF3A1-202ENST00000411423 TMEM184AQ6ZMB5 413 aa21■□□□□ 0.95
SF3A1-202ENST00000411423 FAM193BQ96PV7 902 aaPredicted RBP21■□□□□ 0.95
SF3A1-202ENST00000411423 PAAF1Q9BRP4 392 aa21■□□□□ 0.95
SF3A1-202ENST00000411423 NT5C3AQ9H0P0 336 aa21■□□□□ 0.95
SF3A1-202ENST00000411423 CDH22Q9UJ99 828 aa21■□□□□ 0.95
SF3A1-202ENST00000411423 FBXO2Q9UK22 296 aaPredicted RBP21■□□□□ 0.95
SF3A1-202ENST00000411423 ABLIM1O14639 778 aa20.99■□□□□ 0.95
SF3A1-202ENST00000411423 SLC16A4O15374 487 aa20.99■□□□□ 0.95
SF3A1-202ENST00000411423 RECQL4O94761 1208 aa20.99■□□□□ 0.95
SF3A1-202ENST00000411423 PLCG1P19174 1290 aa20.99■□□□□ 0.95
SF3A1-202ENST00000411423 LONP1P36776 959 aaKnown RBP20.99■□□□□ 0.95
SF3A1-202ENST00000411423 EFNA5P52803 228 aa20.99■□□□□ 0.95
SF3A1-202ENST00000411423 CEBPZQ03701 1054 aaKnown RBP20.99■□□□□ 0.95
SF3A1-202ENST00000411423 PTPN14Q15678 1187 aa20.99■□□□□ 0.95
SF3A1-202ENST00000411423 ATF7IP2Q5U623 682 aa20.99■□□□□ 0.95
SF3A1-202ENST00000411423 RNF168Q8IYW5 571 aaPredicted RBP20.99■□□□□ 0.95
SF3A1-202ENST00000411423 CEP120Q8N960 986 aa20.99■□□□□ 0.95
SF3A1-202ENST00000411423 EPSTI1Q96J88 318 aa20.99■□□□□ 0.95
SF3A1-202ENST00000411423 DRC1Q96MC2 740 aa20.99■□□□□ 0.95
SF3A1-202ENST00000411423 CLIC6Q96NY7 704 aa20.99■□□□□ 0.95
SF3A1-202ENST00000411423 USP28Q96RU2 1077 aa20.99■□□□□ 0.95
SF3A1-202ENST00000411423 APOL5Q9BWW9 433 aa20.99■□□□□ 0.95
SF3A1-202ENST00000411423 S1PR5Q9H228 398 aa20.99■□□□□ 0.95
SF3A1-202ENST00000411423 EPHX3Q9H6B9 360 aa20.99■□□□□ 0.95
SF3A1-202ENST00000411423 TMEM134Q9H6X4 195 aa20.99■□□□□ 0.95
SF3A1-202ENST00000411423 PTPRHQ9HD43 1115 aa20.99■□□□□ 0.95
SF3A1-202ENST00000411423 KMT5AQ9NQR1 393 aa20.99■□□□□ 0.95
SF3A1-202ENST00000411423 HCFC2Q9Y5Z7 792 aa20.99■□□□□ 0.95
SF3A1-202ENST00000411423 PHLPP2Q6ZVD8 1323 aa20.99■□□□□ 0.95
SF3A1-202ENST00000411423 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP20.98■□□□□ 0.95
SF3A1-202ENST00000411423 C19orf67A6NJJ6 358 aa20.98■□□□□ 0.95
SF3A1-202ENST00000411423 K7ERI5 159 aa20.98■□□□□ 0.95
SF3A1-202ENST00000411423 STX6O43752 255 aa20.98■□□□□ 0.95
SF3A1-202ENST00000411423 LILRB3O75022 631 aa20.98■□□□□ 0.95
SF3A1-202ENST00000411423 BMP15O95972 392 aa20.98■□□□□ 0.95
SF3A1-202ENST00000411423 CA8P35219 290 aa20.98■□□□□ 0.95
SF3A1-202ENST00000411423 DMP1Q13316 513 aaPredicted RBP20.98■□□□□ 0.95
SF3A1-202ENST00000411423 MCM6Q14566 821 aa20.98■□□□□ 0.95
SF3A1-202ENST00000411423 NAB2Q15742 525 aa20.98■□□□□ 0.95
SF3A1-202ENST00000411423 TMEM132AQ24JP5 1023 aa20.98■□□□□ 0.95
SF3A1-202ENST00000411423 ANKRD54Q6NXT1 300 aa20.98■□□□□ 0.95
SF3A1-202ENST00000411423 GJD3Q8N144 294 aa20.98■□□□□ 0.95
SF3A1-202ENST00000411423 CDK5RAP3Q96JB5 506 aa20.98■□□□□ 0.95
SF3A1-202ENST00000411423 ACO2Q99798 780 aaKnown RBP20.98■□□□□ 0.95
SF3A1-202ENST00000411423 TARS2Q9BW92 718 aaKnown RBP20.98■□□□□ 0.95
SF3A1-202ENST00000411423 USP15Q9Y4E8 981 aaPredicted RBP20.98■□□□□ 0.95
SF3A1-202ENST00000411423 IRAK3Q9Y616 596 aa20.98■□□□□ 0.95
SF3A1-202ENST00000411423 ZMYM2Q9UBW7 1377 aa20.97■□□□□ 0.95
SF3A1-202ENST00000411423 PLS3P13797 630 aa20.97■□□□□ 0.95
SF3A1-202ENST00000411423 IGFBP6P24592 240 aaPredicted RBP20.97■□□□□ 0.95
SF3A1-202ENST00000411423 UBA7P41226 1012 aa20.97■□□□□ 0.95
SF3A1-202ENST00000411423 GRIK3Q13003 919 aa20.97■□□□□ 0.95
SF3A1-202ENST00000411423 DHX8Q14562 1220 aaKnown RBP20.97■□□□□ 0.95
SF3A1-202ENST00000411423 KANK3Q6NY19 840 aa20.97■□□□□ 0.95
SF3A1-202ENST00000411423 HACE1Q8IYU2 909 aa20.97■□□□□ 0.95
SF3A1-202ENST00000411423 KCTD17Q8N5Z5 321 aa20.97■□□□□ 0.95
SF3A1-202ENST00000411423 TMEM161BQ8NDZ6 487 aa20.97■□□□□ 0.95
SF3A1-202ENST00000411423 ZBTB45Q96K62 511 aaPredicted RBP20.97■□□□□ 0.95
SF3A1-202ENST00000411423 NTPCRQ9BSD7 190 aaKnown RBP20.97■□□□□ 0.95
SF3A1-202ENST00000411423 TIPINQ9BVW5 301 aa20.97■□□□□ 0.95
SF3A1-202ENST00000411423 CDT1Q9H211 546 aa20.97■□□□□ 0.95
SF3A1-202ENST00000411423 TNFSF13BQ9Y275 285 aa20.97■□□□□ 0.95
SF3A1-202ENST00000411423 GDAQ9Y2T3 454 aa20.97■□□□□ 0.95
SF3A1-202ENST00000411423 MEFVO15553 781 aaPredicted RBP20.96■□□□□ 0.95
SF3A1-202ENST00000411423 SLC26A4O43511 780 aa20.96■□□□□ 0.95
SF3A1-202ENST00000411423 EPCAMP16422 314 aa20.96■□□□□ 0.95
SF3A1-202ENST00000411423 PROZP22891 400 aa20.96■□□□□ 0.95
SF3A1-202ENST00000411423 ADHFE1Q8IWW8 467 aa20.96■□□□□ 0.95
SF3A1-202ENST00000411423 SLC22A17Q8WUG5 538 aa20.96■□□□□ 0.95
SF3A1-202ENST00000411423 SPIRE2Q8WWL2 714 aa20.96■□□□□ 0.95
SF3A1-202ENST00000411423 SUSD6Q92537 303 aa20.96■□□□□ 0.95
SF3A1-202ENST00000411423 RAD54LQ92698 747 aa20.96■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 66.8 ms