RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 PRPF3O43395 683 aaKnown RBP7.79□□□□□ -1.16
SCN9A-202ENST00000409435 NMT2O60551 498 aa7.79□□□□□ -1.16
SCN9A-202ENST00000409435 CUTAO60888 179 aa7.79□□□□□ -1.16
SCN9A-202ENST00000409435 CD58P19256 250 aa7.79□□□□□ -1.16
SCN9A-202ENST00000409435 MFAP3P55082 362 aa7.79□□□□□ -1.16
SCN9A-202ENST00000409435 ANKRD20A4Q4UJ75 823 aa7.79□□□□□ -1.16
SCN9A-202ENST00000409435 ANKRD20A8PQ5CZ79 823 aa7.79□□□□□ -1.16
SCN9A-202ENST00000409435 ANKRD20A2Q5SQ80 823 aa7.79□□□□□ -1.16
SCN9A-202ENST00000409435 ANKRD20A1Q5TYW2 823 aa7.79□□□□□ -1.16
SCN9A-202ENST00000409435 ATL3Q6DD88 541 aa7.79□□□□□ -1.16
SCN9A-202ENST00000409435 LRRC71Q8N4P6 559 aa7.79□□□□□ -1.16
SCN9A-202ENST00000409435 CSGALNACT2Q8N6G5 542 aa7.79□□□□□ -1.16
SCN9A-202ENST00000409435 TDRD5Q8NAT2 981 aaKnown RBP7.79□□□□□ -1.16
SCN9A-202ENST00000409435 ANLNQ9NQW6 1124 aa7.79□□□□□ -1.16
SCN9A-202ENST00000409435 TRPM5Q9NZQ8 1165 aa7.79□□□□□ -1.16
SCN9A-202ENST00000409435 TGFB3P10600 412 aa7.79□□□□□ -1.16
SCN9A-202ENST00000409435 ADD1P35611 737 aaKnown RBP7.79□□□□□ -1.16
SCN9A-202ENST00000409435 ALDH5A1P51649 535 aaPredicted RBP7.79□□□□□ -1.16
SCN9A-202ENST00000409435 STX17P56962 302 aa7.79□□□□□ -1.16
SCN9A-202ENST00000409435 ASIC2Q16515 512 aa7.79□□□□□ -1.16
SCN9A-202ENST00000409435 ZNF699Q32M78 642 aa7.79□□□□□ -1.16
SCN9A-202ENST00000409435 RAB42Q8N4Z0 105 aa7.79□□□□□ -1.16
SCN9A-202ENST00000409435 MSL3Q8N5Y2 521 aaKnown RBP7.79□□□□□ -1.16
SCN9A-202ENST00000409435 MRIQ9BWK5 157 aa7.79□□□□□ -1.16
SCN9A-202ENST00000409435 METTL14Q9HCE5 456 aaKnown RBP7.79□□□□□ -1.16
SCN9A-202ENST00000409435 ZCCHC17Q9NP64 241 aaKnown RBP7.79□□□□□ -1.16
SCN9A-202ENST00000409435 SLC25A13Q9UJS0 675 aa7.79□□□□□ -1.16
SCN9A-202ENST00000409435 ABCB4P21439 1286 aa7.79□□□□□ -1.16
SCN9A-202ENST00000409435 HARS2P49590 506 aaKnown RBP7.79□□□□□ -1.16
SCN9A-202ENST00000409435 TTC23LQ6PF05 361 aa7.79□□□□□ -1.16
SCN9A-202ENST00000409435 GET4Q7L5D6 327 aaPredicted RBP7.79□□□□□ -1.16
SCN9A-202ENST00000409435 OTOP1Q7RTM1 612 aa7.79□□□□□ -1.16
SCN9A-202ENST00000409435 TRIM48Q8IWZ4 208 aa7.79□□□□□ -1.16
SCN9A-202ENST00000409435 DEFB123Q8N688 67 aa7.79□□□□□ -1.16
SCN9A-202ENST00000409435 RABGGTAQ92696 567 aa7.79□□□□□ -1.16
SCN9A-202ENST00000409435 GPR20Q99678 358 aa7.79□□□□□ -1.16
SCN9A-202ENST00000409435 IDI2Q9BXS1 227 aa7.79□□□□□ -1.16
SCN9A-202ENST00000409435 CPVLQ9H3G5 476 aa7.79□□□□□ -1.16
SCN9A-202ENST00000409435 PLA2G4CQ9UP65 541 aa7.79□□□□□ -1.16
SCN9A-202ENST00000409435 CTNND2Q9UQB3 1225 aa7.79□□□□□ -1.16
SCN9A-202ENST00000409435 TSC22D4Q9Y3Q8 395 aa7.79□□□□□ -1.16
SCN9A-202ENST00000409435 AFG3L2Q9Y4W6 797 aa7.79□□□□□ -1.16
SCN9A-202ENST00000409435 B3GAT3O94766 335 aa7.79□□□□□ -1.16
SCN9A-202ENST00000409435 BAG2O95816 211 aa7.79□□□□□ -1.16
SCN9A-202ENST00000409435 DDIT3P35638 169 aa7.79□□□□□ -1.16
SCN9A-202ENST00000409435 GEN1Q17RS7 908 aa7.79□□□□□ -1.16
SCN9A-202ENST00000409435 KIAA1755Q5JYT7 1200 aa7.79□□□□□ -1.16
SCN9A-202ENST00000409435 ZBTB41Q5SVQ8 909 aa7.79□□□□□ -1.16
SCN9A-202ENST00000409435 SEL1L2Q5TEA6 688 aa7.79□□□□□ -1.16
SCN9A-202ENST00000409435 CLEC10AQ8IUN9 316 aa7.79□□□□□ -1.16
SCN9A-202ENST00000409435 MAP7D3Q8IWC1 876 aa7.79□□□□□ -1.16
SCN9A-202ENST00000409435 AK8Q96MA6 479 aa7.79□□□□□ -1.16
SCN9A-202ENST00000409435 LXNQ9BS40 222 aa7.79□□□□□ -1.16
SCN9A-202ENST00000409435 ABCG4Q9H172 646 aa7.79□□□□□ -1.16
SCN9A-202ENST00000409435 I3L4J1 428 aa7.78□□□□□ -1.16
SCN9A-202ENST00000409435 DGAT1O75907 488 aa7.78□□□□□ -1.16
SCN9A-202ENST00000409435 GLUD1P00367 558 aa7.78□□□□□ -1.16
SCN9A-202ENST00000409435 ZSCAN22P10073 491 aaPredicted RBP7.78□□□□□ -1.16
SCN9A-202ENST00000409435 YWHABP31946 246 aaKnown RBP7.78□□□□□ -1.16
SCN9A-202ENST00000409435 PRKCEQ02156 737 aa7.78□□□□□ -1.16
SCN9A-202ENST00000409435 FAM26FQ5R3K3 315 aa7.78□□□□□ -1.16
SCN9A-202ENST00000409435 METTL7BQ6UX53 244 aa7.78□□□□□ -1.16
SCN9A-202ENST00000409435 LRRC8DQ7L1W4 858 aa7.78□□□□□ -1.16
SCN9A-202ENST00000409435 ARHGAP18Q8N392 663 aa7.78□□□□□ -1.16
SCN9A-202ENST00000409435 SRBD1Q8N5C6 995 aaKnown RBP7.78□□□□□ -1.16
SCN9A-202ENST00000409435 TRIML1Q8N9V2 468 aa7.78□□□□□ -1.16
SCN9A-202ENST00000409435 PDZD8Q8NEN9 1154 aa7.78□□□□□ -1.16
SCN9A-202ENST00000409435 PIGOQ8TEQ8 1089 aa7.78□□□□□ -1.16
SCN9A-202ENST00000409435 ATOH1Q92858 354 aaPredicted RBP7.78□□□□□ -1.16
SCN9A-202ENST00000409435 SAMD11Q96NU1 681 aa7.78□□□□□ -1.16
SCN9A-202ENST00000409435 SPON2Q9BUD6 331 aa7.78□□□□□ -1.16
SCN9A-202ENST00000409435 ABI2Q9NYB9 513 aaPredicted RBP7.78□□□□□ -1.16
SCN9A-202ENST00000409435 SCHIP1Q9P0W5 487 aaPredicted RBP7.78□□□□□ -1.16
SCN9A-202ENST00000409435 KLHL14Q9P2G3 628 aa7.78□□□□□ -1.16
SCN9A-202ENST00000409435 GAKO14976 1311 aa7.78□□□□□ -1.16
SCN9A-202ENST00000409435 RFC2P35250 354 aa7.78□□□□□ -1.16
SCN9A-202ENST00000409435 ARL4AP40617 200 aa7.78□□□□□ -1.16
SCN9A-202ENST00000409435 MTMR3Q13615 1198 aa7.78□□□□□ -1.16
SCN9A-202ENST00000409435 GIT2Q14161 759 aa7.78□□□□□ -1.16
SCN9A-202ENST00000409435 C3orf67Q6ZVT6 689 aa7.78□□□□□ -1.16
SCN9A-202ENST00000409435 PALB2Q86YC2 1186 aa7.78□□□□□ -1.16
SCN9A-202ENST00000409435 ST13P4Q8IZP2 240 aaPredicted RBP7.78□□□□□ -1.16
SCN9A-202ENST00000409435 TMX3Q96JJ7 454 aa7.78□□□□□ -1.16
SCN9A-202ENST00000409435 SENP7Q9BQF6 1050 aa7.78□□□□□ -1.16
SCN9A-202ENST00000409435 WDR18Q9BV38 432 aa7.78□□□□□ -1.16
SCN9A-202ENST00000409435 RIC8AQ9NPQ8 531 aa7.78□□□□□ -1.16
SCN9A-202ENST00000409435 FAM217BQ9NTX9 383 aaPredicted RBP7.78□□□□□ -1.16
SCN9A-202ENST00000409435 UXTQ9UBK9 157 aaPredicted RBP7.78□□□□□ -1.16
SCN9A-202ENST00000409435 DSEQ9UL01 958 aa7.78□□□□□ -1.16
SCN9A-202ENST00000409435 PCDHB15Q9Y5E8 787 aa7.78□□□□□ -1.16
SCN9A-202ENST00000409435 CICQ96RK0 1608 aaPredicted RBP7.78□□□□□ -1.16
SCN9A-202ENST00000409435 DUSP11O75319 330 aaKnown RBP7.78□□□□□ -1.16
SCN9A-202ENST00000409435 THP07101 528 aa7.78□□□□□ -1.16
SCN9A-202ENST00000409435 EPHA7Q15375 998 aa7.78□□□□□ -1.16
SCN9A-202ENST00000409435 HHATQ5VTY9 493 aa7.78□□□□□ -1.16
SCN9A-202ENST00000409435 C16orf87Q6PH81 154 aa7.78□□□□□ -1.16
SCN9A-202ENST00000409435 CCDC25Q86WR0 208 aa7.78□□□□□ -1.16
SCN9A-202ENST00000409435 PROM2Q8N271 834 aa7.78□□□□□ -1.16
SCN9A-202ENST00000409435 LARP4BQ92615 738 aaKnown RBP7.78□□□□□ -1.16
SCN9A-202ENST00000409435 TMEM143Q96AN5 459 aa7.78□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 68.5 ms