RNA–Protein interactions for RNA: ENST00000397643.3

CUX2-202, Transcript of cut like homeobox 2, humanhuman

TSL 1 (best)

Gene CUX2, Length 890 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2-202ENST00000397643 ZDHHC7Q9NXF8 308 aa17.97■□□□□ 0.47
CUX2-202ENST00000397643 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP17.97■□□□□ 0.47
CUX2-202ENST00000397643 SIT1Q9Y3P8 196 aa17.97■□□□□ 0.47
CUX2-202ENST00000397643 NUMBLQ9Y6R0 609 aa17.97■□□□□ 0.47
CUX2-202ENST00000397643 CACNA1BQ00975 2339 aa17.97■□□□□ 0.47
CUX2-202ENST00000397643 SEC24BO95487 1268 aa17.96■□□□□ 0.47
CUX2-202ENST00000397643 EMC2Q15006 297 aa17.96■□□□□ 0.47
CUX2-202ENST00000397643 INF2Q27J81 1249 aa17.96■□□□□ 0.47
CUX2-202ENST00000397643 DGLUCYQ7Z3D6 616 aa17.96■□□□□ 0.47
CUX2-202ENST00000397643 PALB2Q86YC2 1186 aa17.96■□□□□ 0.47
CUX2-202ENST00000397643 C1orf210Q8IVY1 113 aa17.96■□□□□ 0.47
CUX2-202ENST00000397643 ST13P5Q8NFI4 369 aaPredicted RBP17.96■□□□□ 0.47
CUX2-202ENST00000397643 PJA1Q8NG27 643 aa17.96■□□□□ 0.47
CUX2-202ENST00000397643 AIFM3Q96NN9 605 aa17.96■□□□□ 0.47
CUX2-202ENST00000397643 LXNQ9BS40 222 aa17.96■□□□□ 0.47
CUX2-202ENST00000397643 RPP25Q9BUL9 199 aaKnown RBP17.96■□□□□ 0.47
CUX2-202ENST00000397643 FOXQ1Q9C009 403 aa17.96■□□□□ 0.47
CUX2-202ENST00000397643 UPF2Q9HAU5 1272 aaKnown RBP17.96■□□□□ 0.47
CUX2-202ENST00000397643 TPRP12270 2363 aaKnown RBP17.96■□□□□ 0.47
CUX2-202ENST00000397643 P4HBP07237 508 aaKnown RBP17.95■□□□□ 0.46
CUX2-202ENST00000397643 AMHR2Q16671 573 aa17.95■□□□□ 0.46
CUX2-202ENST00000397643 FUT10Q6P4F1 479 aa17.95■□□□□ 0.46
CUX2-202ENST00000397643 NOTUMQ6P988 496 aa17.95■□□□□ 0.46
CUX2-202ENST00000397643 DCLRE1AQ6PJP8 1040 aa17.95■□□□□ 0.46
CUX2-202ENST00000397643 ZC3H14Q6PJT7 736 aaKnown RBP17.95■□□□□ 0.46
CUX2-202ENST00000397643 C4orf19Q8IY42 314 aa17.95■□□□□ 0.46
CUX2-202ENST00000397643 GPR65Q8IYL9 337 aa17.95■□□□□ 0.46
CUX2-202ENST00000397643 SUMF1Q8NBK3 374 aa17.95■□□□□ 0.46
CUX2-202ENST00000397643 CCDC51Q96ER9 411 aa17.95■□□□□ 0.46
CUX2-202ENST00000397643 CPB2Q96IY4 423 aa17.95■□□□□ 0.46
CUX2-202ENST00000397643 PIDD1Q9HB75 910 aa17.95■□□□□ 0.46
CUX2-202ENST00000397643 XPNPEP1Q9NQW7 623 aa17.95■□□□□ 0.46
CUX2-202ENST00000397643 DLL3Q9NYJ7 618 aa17.95■□□□□ 0.46
CUX2-202ENST00000397643 FNIP2Q9P278 1114 aa17.95■□□□□ 0.46
CUX2-202ENST00000397643 MYH15Q9Y2K3 1946 aa17.95■□□□□ 0.46
CUX2-202ENST00000397643 SPTBN2O15020 2390 aa17.95■□□□□ 0.46
CUX2-202ENST00000397643 ASAP2O43150 1006 aa17.94■□□□□ 0.46
CUX2-202ENST00000397643 GAS2O43903 313 aaKnown RBP17.94■□□□□ 0.46
CUX2-202ENST00000397643 DKC1O60832 514 aaKnown RBP eCLIP17.94■□□□□ 0.46
CUX2-202ENST00000397643 LRRN2O75325 713 aa17.94■□□□□ 0.46
CUX2-202ENST00000397643 ERLIN2O94905 339 aa17.94■□□□□ 0.46
CUX2-202ENST00000397643 RPL17P18621 184 aaKnown RBP17.94■□□□□ 0.46
CUX2-202ENST00000397643 AXLP30530 894 aa17.94■□□□□ 0.46
CUX2-202ENST00000397643 YWHABP31946 246 aaKnown RBP17.94■□□□□ 0.46
CUX2-202ENST00000397643 STARD6P59095 220 aa17.94■□□□□ 0.46
CUX2-202ENST00000397643 PTENP60484 403 aa17.94■□□□□ 0.46
CUX2-202ENST00000397643 TOB2Q14106 344 aaPredicted RBP17.94■□□□□ 0.46
CUX2-202ENST00000397643 PUM1Q14671 1186 aaKnown RBP eCLIP17.94■□□□□ 0.46
CUX2-202ENST00000397643 PCBP1Q15365 356 aaKnown RBP eCLIP17.94■□□□□ 0.46
CUX2-202ENST00000397643 IFNLR1Q8IU57 520 aaPredicted RBP17.94■□□□□ 0.46
CUX2-202ENST00000397643 GLYCTKQ8IVS8 523 aa17.94■□□□□ 0.46
CUX2-202ENST00000397643 EXOC8Q8IYI6 725 aa17.94■□□□□ 0.46
CUX2-202ENST00000397643 TRIM22Q8IYM9 498 aa17.94■□□□□ 0.46
CUX2-202ENST00000397643 DCLK2Q8N568 766 aa17.94■□□□□ 0.46
CUX2-202ENST00000397643 RUBCNQ92622 972 aa17.94■□□□□ 0.46
CUX2-202ENST00000397643 HAS1Q92839 578 aa17.94■□□□□ 0.46
CUX2-202ENST00000397643 FGF14Q92915 247 aa17.94■□□□□ 0.46
CUX2-202ENST00000397643 FAM20AQ96MK3 541 aa17.94■□□□□ 0.46
CUX2-202ENST00000397643 CSRNP2Q9H175 543 aa17.94■□□□□ 0.46
CUX2-202ENST00000397643 NXF3Q9H4D5 531 aaKnown RBP17.94■□□□□ 0.46
CUX2-202ENST00000397643 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP17.94■□□□□ 0.46
CUX2-202ENST00000397643 RGL1Q9NZL6 768 aa17.94■□□□□ 0.46
CUX2-202ENST00000397643 GIT1Q9Y2X7 761 aa17.94■□□□□ 0.46
CUX2-202ENST00000397643 PATJQ8NI35 1801 aa17.93■□□□□ 0.46
CUX2-202ENST00000397643 ZBTB39O15060 712 aa17.93■□□□□ 0.46
CUX2-202ENST00000397643 ZMYND10O75800 440 aa17.93■□□□□ 0.46
CUX2-202ENST00000397643 DEXIO95424 95 aa17.93■□□□□ 0.46
CUX2-202ENST00000397643 MBTD1Q05BQ5 628 aa17.93■□□□□ 0.46
CUX2-202ENST00000397643 SSRP1Q08945 709 aaKnown RBP17.93■□□□□ 0.46
CUX2-202ENST00000397643 SPIRE1Q08AE8 756 aa17.93■□□□□ 0.46
CUX2-202ENST00000397643 USP41Q3LFD5 358 aa17.93■□□□□ 0.46
CUX2-202ENST00000397643 PARM1Q6UWI2 310 aa17.93■□□□□ 0.46
CUX2-202ENST00000397643 TCP11Q8WWU5 503 aa17.93■□□□□ 0.46
CUX2-202ENST00000397643 DDX23Q9BUQ8 820 aaKnown RBP17.93■□□□□ 0.46
CUX2-202ENST00000397643 COLEC11Q9BWP8 271 aa17.93■□□□□ 0.46
CUX2-202ENST00000397643 CACNG4Q9UBN1 327 aa17.93■□□□□ 0.46
CUX2-202ENST00000397643 FBXW11Q9UKB1 542 aa17.93■□□□□ 0.46
CUX2-202ENST00000397643 ADAM28Q9UKQ2 775 aa17.93■□□□□ 0.46
CUX2-202ENST00000397643 MIA3Q5JRA6 1907 aa17.93■□□□□ 0.46
CUX2-202ENST00000397643 ARF4P18085 180 aaPredicted RBP17.92■□□□□ 0.46
CUX2-202ENST00000397643 GPC5P78333 572 aa17.92■□□□□ 0.46
CUX2-202ENST00000397643 EPHA7Q15375 998 aa17.92■□□□□ 0.46
CUX2-202ENST00000397643 RTP2Q5QGT7 225 aa17.92■□□□□ 0.46
CUX2-202ENST00000397643 PPP4R3AQ6IN85 833 aa17.92■□□□□ 0.46
CUX2-202ENST00000397643 GALNT17Q6IS24 598 aa17.92■□□□□ 0.46
CUX2-202ENST00000397643 KRT25Q7Z3Z0 450 aa17.92■□□□□ 0.46
CUX2-202ENST00000397643 FAM177A1Q8N128 213 aaPredicted RBP17.92■□□□□ 0.46
CUX2-202ENST00000397643 RABGGTAQ92696 567 aa17.92■□□□□ 0.46
CUX2-202ENST00000397643 MTRQ99707 1265 aa17.92■□□□□ 0.46
CUX2-202ENST00000397643 APOL6Q9BWW8 343 aa17.92■□□□□ 0.46
CUX2-202ENST00000397643 ZMYM2Q9UBW7 1377 aa17.91■□□□□ 0.46
CUX2-202ENST00000397643 NR1I2O75469 434 aa17.91■□□□□ 0.46
CUX2-202ENST00000397643 FSHRP23945 695 aa17.91■□□□□ 0.46
CUX2-202ENST00000397643 AKAP5P24588 427 aa17.91■□□□□ 0.46
CUX2-202ENST00000397643 NTHL1P78549 312 aa17.91■□□□□ 0.46
CUX2-202ENST00000397643 POU5F1BQ06416 359 aa17.91■□□□□ 0.46
CUX2-202ENST00000397643 CAPSQ13938 189 aa17.91■□□□□ 0.46
CUX2-202ENST00000397643 PRSS55Q6UWB4 352 aaPredicted RBP17.91■□□□□ 0.46
CUX2-202ENST00000397643 GRASPQ7Z6J2 395 aaPredicted RBP17.91■□□□□ 0.46
CUX2-202ENST00000397643 ASAP3Q8TDY4 903 aa17.91■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 68.4 ms