RNA–Protein interactions for RNA: ENST00000395802.7

VAPB-202, Transcript of VAMP associated protein B and C, humanhuman

TSL 1 (best) BASIC

Gene VAPB, Length 1,834 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPB-202ENST00000395802 RDH13Q8NBN7 331 aa14.9□□□□□ -0.02
VAPB-202ENST00000395802 CAGE1Q8TC20 777 aa14.9□□□□□ -0.02
VAPB-202ENST00000395802 PPP1R13LQ8WUF5 828 aa14.9□□□□□ -0.02
VAPB-202ENST00000395802 ZNF668Q96K58 619 aaPredicted RBP14.9□□□□□ -0.02
VAPB-202ENST00000395802 IKZF4Q9H2S9 585 aa14.9□□□□□ -0.02
VAPB-202ENST00000395802 EIF2AK3Q9NZJ5 1116 aaKnown RBP14.9□□□□□ -0.02
VAPB-202ENST00000395802 ESPNB1AK53 854 aa14.89□□□□□ -0.03
VAPB-202ENST00000395802 TISP43B9A030 160 aa14.89□□□□□ -0.03
VAPB-202ENST00000395802 OGTO15294 1046 aa14.89□□□□□ -0.03
VAPB-202ENST00000395802 TLR3O15455 904 aaKnown RBP14.89□□□□□ -0.03
VAPB-202ENST00000395802 MCF2P10911 925 aa14.89□□□□□ -0.03
VAPB-202ENST00000395802 GJA8P48165 433 aa14.89□□□□□ -0.03
VAPB-202ENST00000395802 VAMP7P51809 220 aa14.89□□□□□ -0.03
VAPB-202ENST00000395802 KCNH2Q12809 1159 aa14.89□□□□□ -0.03
VAPB-202ENST00000395802 TRIM14Q14142 442 aa14.89□□□□□ -0.03
VAPB-202ENST00000395802 SURF1Q15526 300 aa14.89□□□□□ -0.03
VAPB-202ENST00000395802 AMHR2Q16671 573 aa14.89□□□□□ -0.03
VAPB-202ENST00000395802 DCAF4L1Q3SXM0 396 aa14.89□□□□□ -0.03
VAPB-202ENST00000395802 ZSCAN30Q86W11 494 aa14.89□□□□□ -0.03
VAPB-202ENST00000395802 CCDC51Q96ER9 411 aa14.89□□□□□ -0.03
VAPB-202ENST00000395802 BORCS6Q96GS4 357 aa14.89□□□□□ -0.03
VAPB-202ENST00000395802 FAM213AQ9BRX8 229 aa14.89□□□□□ -0.03
VAPB-202ENST00000395802 NUP58Q9BVL2 599 aa14.89□□□□□ -0.03
VAPB-202ENST00000395802 PTPRHQ9HD43 1115 aa14.89□□□□□ -0.03
VAPB-202ENST00000395802 TRMT13Q9NUP7 481 aaKnown RBP14.89□□□□□ -0.03
VAPB-202ENST00000395802 INTS13Q9NVM9 706 aa14.89□□□□□ -0.03
VAPB-202ENST00000395802 ZKSCAN5Q9Y2L8 839 aa14.89□□□□□ -0.03
VAPB-202ENST00000395802 SQORQ9Y6N5 450 aa14.89□□□□□ -0.03
VAPB-202ENST00000395802 ITIH6Q6UXX5 1313 aa14.89□□□□□ -0.03
VAPB-202ENST00000395802 GPR182O15218 404 aa14.89□□□□□ -0.03
VAPB-202ENST00000395802 TSPAN1O60635 241 aa14.89□□□□□ -0.03
VAPB-202ENST00000395802 IQCF3P0C7M6 154 aa14.89□□□□□ -0.03
VAPB-202ENST00000395802 ARF4P18085 180 aaPredicted RBP14.89□□□□□ -0.03
VAPB-202ENST00000395802 GSDMDP57764 484 aa14.89□□□□□ -0.03
VAPB-202ENST00000395802 MCCD1P59942 119 aaPredicted RBP14.89□□□□□ -0.03
VAPB-202ENST00000395802 MIIPQ5JXC2 388 aa14.89□□□□□ -0.03
VAPB-202ENST00000395802 TMC2Q8TDI7 906 aa14.89□□□□□ -0.03
VAPB-202ENST00000395802 SLC35C1Q96A29 364 aa14.89□□□□□ -0.03
VAPB-202ENST00000395802 SAAL1Q96ER3 474 aa14.89□□□□□ -0.03
VAPB-202ENST00000395802 MFSD14AQ96MC6 490 aa14.89□□□□□ -0.03
VAPB-202ENST00000395802 ERGIC2Q96RQ1 377 aa14.89□□□□□ -0.03
VAPB-202ENST00000395802 FNBP1Q96RU3 617 aa14.89□□□□□ -0.03
VAPB-202ENST00000395802 CDY2AQ9Y6F7 541 aa14.89□□□□□ -0.03
VAPB-202ENST00000395802 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP14.89□□□□□ -0.03
VAPB-202ENST00000395802 GTPBP10A4D1E9 387 aaKnown RBP14.88□□□□□ -0.03
VAPB-202ENST00000395802 P4HA2O15460 535 aa14.88□□□□□ -0.03
VAPB-202ENST00000395802 RPS6KA5O75582 802 aa14.88□□□□□ -0.03
VAPB-202ENST00000395802 GTF2H1P32780 548 aa14.88□□□□□ -0.03
VAPB-202ENST00000395802 CDK7P50613 346 aa14.88□□□□□ -0.03
VAPB-202ENST00000395802 BFSP2Q13515 415 aa14.88□□□□□ -0.03
VAPB-202ENST00000395802 C1orf53Q5VUE5 145 aa14.88□□□□□ -0.03
VAPB-202ENST00000395802 SLC27A1Q6PCB7 646 aa14.88□□□□□ -0.03
VAPB-202ENST00000395802 CCDC186Q7Z3E2 898 aa14.88□□□□□ -0.03
VAPB-202ENST00000395802 SENP6Q9GZR1 1112 aaPredicted RBP14.88□□□□□ -0.03
VAPB-202ENST00000395802 CHST12Q9NRB3 414 aa14.88□□□□□ -0.03
VAPB-202ENST00000395802 AGPAT5Q9NUQ2 364 aa14.88□□□□□ -0.03
VAPB-202ENST00000395802 RBAKQ9NYW8 714 aaPredicted RBP14.88□□□□□ -0.03
VAPB-202ENST00000395802 TRIP12Q14669 1992 aaPredicted RBP14.88□□□□□ -0.03
VAPB-202ENST00000395802 GOLGA8IPA6NC78 632 aa14.87□□□□□ -0.03
VAPB-202ENST00000395802 GOLGA8JA6NMD2 632 aa14.87□□□□□ -0.03
VAPB-202ENST00000395802 B4GALT5O43286 388 aa14.87□□□□□ -0.03
VAPB-202ENST00000395802 B4GALT4O60513 344 aa14.87□□□□□ -0.03
VAPB-202ENST00000395802 AP3M2P53677 418 aa14.87□□□□□ -0.03
VAPB-202ENST00000395802 CYP24A1Q07973 514 aa14.87□□□□□ -0.03
VAPB-202ENST00000395802 FAM26DQ5JW98 314 aa14.87□□□□□ -0.03
VAPB-202ENST00000395802 TMC6Q7Z403 805 aa14.87□□□□□ -0.03
VAPB-202ENST00000395802 ZBTB33Q86T24 672 aa14.87□□□□□ -0.03
VAPB-202ENST00000395802 PPFIBP1Q86W92 1011 aa14.87□□□□□ -0.03
VAPB-202ENST00000395802 CBWD2Q8IUF1 395 aa14.87□□□□□ -0.03
VAPB-202ENST00000395802 PCMTD1Q96MG8 357 aaPredicted RBP14.87□□□□□ -0.03
VAPB-202ENST00000395802 TRIM6Q9C030 488 aaPredicted RBP14.87□□□□□ -0.03
VAPB-202ENST00000395802 KCNF1Q9H3M0 494 aa14.87□□□□□ -0.03
VAPB-202ENST00000395802 BRCA2P51587 3418 aa14.87□□□□□ -0.03
VAPB-202ENST00000395802 TEX33O43247 280 aa14.87□□□□□ -0.03
VAPB-202ENST00000395802 NRDCO43847 1150 aa14.87□□□□□ -0.03
VAPB-202ENST00000395802 CSDE1O75534 798 aaKnown RBP14.87□□□□□ -0.03
VAPB-202ENST00000395802 PSMD6Q15008 389 aa14.87□□□□□ -0.03
VAPB-202ENST00000395802 ZBTB45Q96K62 511 aaPredicted RBP14.87□□□□□ -0.03
VAPB-202ENST00000395802 TOX2Q96NM4 488 aa14.87□□□□□ -0.03
VAPB-202ENST00000395802 PDZD7Q9H5P4 517 aa14.87□□□□□ -0.03
VAPB-202ENST00000395802 CDHR5Q9HBB8 845 aa14.87□□□□□ -0.03
VAPB-202ENST00000395802 DCDC2CA8MYV0 355 aa14.86□□□□□ -0.03
VAPB-202ENST00000395802 PMM2O15305 246 aa14.86□□□□□ -0.03
VAPB-202ENST00000395802 CHRNA1P02708 482 aa14.86□□□□□ -0.03
VAPB-202ENST00000395802 EDN1P05305 212 aa14.86□□□□□ -0.03
VAPB-202ENST00000395802 CLTAP09496 248 aa14.86□□□□□ -0.03
VAPB-202ENST00000395802 HARSP12081 509 aaKnown RBP14.86□□□□□ -0.03
VAPB-202ENST00000395802 ZSCAN20P17040 1043 aaPredicted RBP14.86□□□□□ -0.03
VAPB-202ENST00000395802 TRIM21P19474 475 aaKnown RBP14.86□□□□□ -0.03
VAPB-202ENST00000395802 PBX1P40424 430 aa14.86□□□□□ -0.03
VAPB-202ENST00000395802 ACOT2P49753 483 aa14.86□□□□□ -0.03
VAPB-202ENST00000395802 RBL2Q08999 1139 aa14.86□□□□□ -0.03
VAPB-202ENST00000395802 MGAT3Q09327 533 aa14.86□□□□□ -0.03
VAPB-202ENST00000395802 GBP6Q6ZN66 633 aa14.86□□□□□ -0.03
VAPB-202ENST00000395802 CD302Q8IX05 232 aa14.86□□□□□ -0.03
VAPB-202ENST00000395802 FAM126BQ8IXS8 530 aa14.86□□□□□ -0.03
VAPB-202ENST00000395802 PARD3BQ8TEW8 1205 aa14.86□□□□□ -0.03
VAPB-202ENST00000395802 ZNF830Q96NB3 372 aaPredicted RBP14.86□□□□□ -0.03
VAPB-202ENST00000395802 CDT1Q9H211 546 aa14.86□□□□□ -0.03
VAPB-202ENST00000395802 RPF1Q9H9Y2 349 aaKnown RBP14.86□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms