RNA–Protein interactions for RNA: ENST00000375340.10

SMC1A-202, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 1 (best) BASIC

Gene SMC1A, Length 9,930 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-202ENST00000375340 KLRC3Q07444 240 aa6.97□□□□□ -1.29
SMC1A-202ENST00000375340 KIRREL3Q8IZU9 778 aa6.97□□□□□ -1.29
SMC1A-202ENST00000375340 FBXL16Q8N461 479 aa6.97□□□□□ -1.29
SMC1A-202ENST00000375340 SYT2Q8N9I0 419 aaPredicted RBP6.97□□□□□ -1.29
SMC1A-202ENST00000375340 UNC45AQ9H3U1 944 aa6.97□□□□□ -1.29
SMC1A-202ENST00000375340 NRBP2Q9NSY0 501 aa6.97□□□□□ -1.29
SMC1A-202ENST00000375340 FEM1BQ9UK73 627 aa6.97□□□□□ -1.29
SMC1A-202ENST00000375340 INPP5FQ9Y2H2 1132 aa6.97□□□□□ -1.29
SMC1A-202ENST00000375340 LRRC37A3O60309 1634 aa6.97□□□□□ -1.29
SMC1A-202ENST00000375340 VEGFAP15692 232 aaPredicted RBP6.97□□□□□ -1.29
SMC1A-202ENST00000375340 GARSP41250 739 aaKnown RBP6.97□□□□□ -1.29
SMC1A-202ENST00000375340 SNX16P57768 344 aa6.97□□□□□ -1.29
SMC1A-202ENST00000375340 SWSAP1Q6NVH7 229 aa6.97□□□□□ -1.29
SMC1A-202ENST00000375340 AFAP1L2Q8N4X5 818 aa6.97□□□□□ -1.29
SMC1A-202ENST00000375340 SLC7A3Q8WY07 619 aa6.97□□□□□ -1.29
SMC1A-202ENST00000375340 SLC38A10Q9HBR0 1119 aa6.97□□□□□ -1.29
SMC1A-202ENST00000375340 DMGDHQ9UI17 866 aaKnown RBP6.97□□□□□ -1.29
SMC1A-202ENST00000375340 JCADQ9P266 1359 aa6.97□□□□□ -1.29
SMC1A-202ENST00000375340 ARHGAP23Q9P227 1491 aa6.97□□□□□ -1.29
SMC1A-202ENST00000375340 TMEM120BA0PK00 339 aa6.97□□□□□ -1.29
SMC1A-202ENST00000375340 JAK3P52333 1124 aa6.97□□□□□ -1.29
SMC1A-202ENST00000375340 MMEL1Q495T6 779 aa6.97□□□□□ -1.29
SMC1A-202ENST00000375340 SPDL1Q96EA4 605 aa6.97□□□□□ -1.29
SMC1A-202ENST00000375340 DDX27Q96GQ7 796 aaKnown RBP6.97□□□□□ -1.29
SMC1A-202ENST00000375340 DUSP9Q99956 384 aaKnown RBP6.97□□□□□ -1.29
SMC1A-202ENST00000375340 OSGEPQ9NPF4 335 aa6.97□□□□□ -1.29
SMC1A-202ENST00000375340 TARSP26639 723 aaKnown RBP6.96□□□□□ -1.29
SMC1A-202ENST00000375340 NOP14P78316 857 aaKnown RBP6.96□□□□□ -1.29
SMC1A-202ENST00000375340 CDR2Q01850 454 aa6.96□□□□□ -1.29
SMC1A-202ENST00000375340 TRPM8Q7Z2W7 1104 aa6.96□□□□□ -1.29
SMC1A-202ENST00000375340 MYCBPAPQ8TBZ2 947 aa6.96□□□□□ -1.29
SMC1A-202ENST00000375340 ATG4AQ8WYN0 398 aa6.96□□□□□ -1.29
SMC1A-202ENST00000375340 MCEEQ96PE7 176 aa6.96□□□□□ -1.29
SMC1A-202ENST00000375340 RMDN3Q96TC7 470 aa6.96□□□□□ -1.29
SMC1A-202ENST00000375340 TSC22D3Q99576 134 aa6.96□□□□□ -1.29
SMC1A-202ENST00000375340 MTRQ99707 1265 aa6.96□□□□□ -1.29
SMC1A-202ENST00000375340 SCINQ9Y6U3 715 aa6.96□□□□□ -1.29
SMC1A-202ENST00000375340 CAPN9O14815 690 aa6.96□□□□□ -1.29
SMC1A-202ENST00000375340 MED7O43513 233 aa6.96□□□□□ -1.29
SMC1A-202ENST00000375340 AGTP01019 485 aa6.96□□□□□ -1.29
SMC1A-202ENST00000375340 POLR2BP30876 1174 aaKnown RBP6.96□□□□□ -1.29
SMC1A-202ENST00000375340 FAM20AQ96MK3 541 aa6.96□□□□□ -1.29
SMC1A-202ENST00000375340 NUF2Q9BZD4 464 aa6.96□□□□□ -1.29
SMC1A-202ENST00000375340 UBN1Q9NPG3 1134 aa6.96□□□□□ -1.29
SMC1A-202ENST00000375340 PFDN4Q9NQP4 134 aa6.96□□□□□ -1.29
SMC1A-202ENST00000375340 KBTBD4Q9NVX7 518 aa6.96□□□□□ -1.29
SMC1A-202ENST00000375340 RAB21Q9UL25 225 aa6.96□□□□□ -1.29
SMC1A-202ENST00000375340 M0QYV0 167 aa6.96□□□□□ -1.3
SMC1A-202ENST00000375340 FAM107AO95990 144 aa6.96□□□□□ -1.3
SMC1A-202ENST00000375340 ENO1P06733 434 aaKnown RBP6.96□□□□□ -1.3
SMC1A-202ENST00000375340 ITGA4P13612 1032 aa6.96□□□□□ -1.3
SMC1A-202ENST00000375340 CASP2P42575 452 aa6.96□□□□□ -1.3
SMC1A-202ENST00000375340 SCTRP47872 440 aa6.96□□□□□ -1.3
SMC1A-202ENST00000375340 SLC12A2P55011 1212 aa6.96□□□□□ -1.3
SMC1A-202ENST00000375340 LARP7Q4G0J3 582 aaKnown RBP eCLIP6.96□□□□□ -1.3
SMC1A-202ENST00000375340 CYP4A22Q5TCH4 519 aa6.96□□□□□ -1.3
SMC1A-202ENST00000375340 C1orf146Q5VVC0 180 aa6.96□□□□□ -1.3
SMC1A-202ENST00000375340 RHPN2Q8IUC4 686 aa6.96□□□□□ -1.3
SMC1A-202ENST00000375340 GPD1LQ8N335 351 aa6.96□□□□□ -1.3
SMC1A-202ENST00000375340 ATXN7L3BQ96GX2 97 aa6.96□□□□□ -1.3
SMC1A-202ENST00000375340 TMEM51Q9NW97 253 aa6.96□□□□□ -1.3
SMC1A-202ENST00000375340 DDX20Q9UHI6 824 aaKnown RBP6.96□□□□□ -1.3
SMC1A-202ENST00000375340 COPEO14579 308 aa6.96□□□□□ -1.3
SMC1A-202ENST00000375340 TLR3O15455 904 aaKnown RBP6.96□□□□□ -1.3
SMC1A-202ENST00000375340 SLC29A2Q14542 456 aa6.96□□□□□ -1.3
SMC1A-202ENST00000375340 ZNF699Q32M78 642 aa6.96□□□□□ -1.3
SMC1A-202ENST00000375340 PPP6R3Q5H9R7 873 aaPredicted RBP6.96□□□□□ -1.3
SMC1A-202ENST00000375340 SLC30A10Q6XR72 485 aa6.96□□□□□ -1.3
SMC1A-202ENST00000375340 TXNRD3Q86VQ6 643 aa6.96□□□□□ -1.3
SMC1A-202ENST00000375340 RNF169Q8NCN4 708 aa6.96□□□□□ -1.3
SMC1A-202ENST00000375340 NKX2-3Q8TAU0 364 aa6.96□□□□□ -1.3
SMC1A-202ENST00000375340 AGR3Q8TD06 166 aa6.96□□□□□ -1.3
SMC1A-202ENST00000375340 ANKS1AQ92625 1134 aa6.96□□□□□ -1.3
SMC1A-202ENST00000375340 FAM161BQ96MY7 647 aa6.96□□□□□ -1.3
SMC1A-202ENST00000375340 TUFT1Q9NNX1 390 aa6.96□□□□□ -1.3
SMC1A-202ENST00000375340 C21orf2O43822 256 aa6.96□□□□□ -1.3
SMC1A-202ENST00000375340 ZBED1O96006 694 aa6.96□□□□□ -1.3
SMC1A-202ENST00000375340 POLD1P28340 1107 aa6.96□□□□□ -1.3
SMC1A-202ENST00000375340 DRP2Q13474 957 aa6.96□□□□□ -1.3
SMC1A-202ENST00000375340 VGLL2Q8N8G2 317 aa6.96□□□□□ -1.3
SMC1A-202ENST00000375340 CXorf56Q9H5V9 222 aa6.96□□□□□ -1.3
SMC1A-202ENST00000375340 UBE4BO95155 1302 aa6.96□□□□□ -1.3
SMC1A-202ENST00000375340 CCT8L1PA6NM43 557 aa6.96□□□□□ -1.3
SMC1A-202ENST00000375340 SMTNL2Q2TAL5 461 aa6.96□□□□□ -1.3
SMC1A-202ENST00000375340 Q3C1V9 767 aa6.96□□□□□ -1.3
SMC1A-202ENST00000375340 AADACL2Q6P093 401 aa6.96□□□□□ -1.3
SMC1A-202ENST00000375340 SUCLA2Q9P2R7 463 aaPredicted RBP6.96□□□□□ -1.3
SMC1A-202ENST00000375340 RNF225M0QZC1 329 aaPredicted RBP6.96□□□□□ -1.3
SMC1A-202ENST00000375340 SLC4A1P02730 911 aa6.96□□□□□ -1.3
SMC1A-202ENST00000375340 PSMC6P62333 389 aa6.96□□□□□ -1.3
SMC1A-202ENST00000375340 THNSL1Q8IYQ7 743 aa6.96□□□□□ -1.3
SMC1A-202ENST00000375340 POP1Q99575 1024 aaKnown RBP6.96□□□□□ -1.3
SMC1A-202ENST00000375340 TRIM55Q9BYV6 548 aa6.96□□□□□ -1.3
SMC1A-202ENST00000375340 USP15Q9Y4E8 981 aaPredicted RBP6.96□□□□□ -1.3
SMC1A-202ENST00000375340 PITPNM2Q9BZ72 1349 aa6.96□□□□□ -1.3
SMC1A-202ENST00000375340 COL5A2P05997 1499 aaPredicted RBP6.96□□□□□ -1.3
SMC1A-202ENST00000375340 ZNF142P52746 1687 aaPredicted RBP6.96□□□□□ -1.3
SMC1A-202ENST00000375340 GGPS1O95749 300 aa6.96□□□□□ -1.3
SMC1A-202ENST00000375340 DTX3LQ8TDB6 740 aa6.96□□□□□ -1.3
SMC1A-202ENST00000375340 C9orf72Q96LT7 481 aa6.96□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms