RNA–Protein interactions for RNA: ENST00000357604.9

UPF2-202, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,193 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-202ENST00000357604 HSPBP1Q9NZL4 362 aa9.95□□□□□ -0.82
UPF2-202ENST00000357604 MAN1B1Q9UKM7 699 aa9.95□□□□□ -0.82
UPF2-202ENST00000357604 TNFSF13BQ9Y275 285 aa9.95□□□□□ -0.82
UPF2-202ENST00000357604 INSL6Q9Y581 213 aa9.95□□□□□ -0.82
UPF2-202ENST00000357604 DPYSL4O14531 572 aa9.95□□□□□ -0.82
UPF2-202ENST00000357604 B4GALT4O60513 344 aa9.95□□□□□ -0.82
UPF2-202ENST00000357604 CPB1P15086 417 aa9.95□□□□□ -0.82
UPF2-202ENST00000357604 C4orf50Q6ZRC1 276 aa9.95□□□□□ -0.82
UPF2-202ENST00000357604 SND1Q7KZF4 910 aaKnown RBP eCLIP9.95□□□□□ -0.82
UPF2-202ENST00000357604 AOPEPQ8N6M6 819 aa9.95□□□□□ -0.82
UPF2-202ENST00000357604 CCDC127Q96BQ5 260 aa9.95□□□□□ -0.82
UPF2-202ENST00000357604 C11orf84Q9BUA3 381 aaPredicted RBP9.95□□□□□ -0.82
UPF2-202ENST00000357604 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP9.95□□□□□ -0.82
UPF2-202ENST00000357604 PLEKHA5Q9HAU0 1116 aa9.95□□□□□ -0.82
UPF2-202ENST00000357604 EML1O00423 815 aa9.95□□□□□ -0.82
UPF2-202ENST00000357604 ARIH2O95376 493 aa9.95□□□□□ -0.82
UPF2-202ENST00000357604 TAF6P49848 677 aa9.95□□□□□ -0.82
UPF2-202ENST00000357604 TDRD12Q587J7 1177 aaKnown RBP9.95□□□□□ -0.82
UPF2-202ENST00000357604 PAF1Q8N7H5 531 aa9.95□□□□□ -0.82
UPF2-202ENST00000357604 DNAJC5GQ8N7S2 189 aa9.95□□□□□ -0.82
UPF2-202ENST00000357604 CPB2Q96IY4 423 aa9.95□□□□□ -0.82
UPF2-202ENST00000357604 ZNF668Q96K58 619 aaPredicted RBP9.95□□□□□ -0.82
UPF2-202ENST00000357604 DERAQ9Y315 318 aa9.95□□□□□ -0.82
UPF2-202ENST00000357604 NPHP3-ACAD11A0A0J9YXS1 232 aa9.94□□□□□ -0.82
UPF2-202ENST00000357604 C22orf31O95567 290 aa9.94□□□□□ -0.82
UPF2-202ENST00000357604 CKBP12277 381 aa9.94□□□□□ -0.82
UPF2-202ENST00000357604 PTENP60484 403 aa9.94□□□□□ -0.82
UPF2-202ENST00000357604 PTPAQ15257 358 aa9.94□□□□□ -0.82
UPF2-202ENST00000357604 SHC4Q6S5L8 630 aa9.94□□□□□ -0.82
UPF2-202ENST00000357604 TRIM9Q9C026 710 aa9.94□□□□□ -0.82
UPF2-202ENST00000357604 LONRF3Q496Y0 759 aa9.94□□□□□ -0.82
UPF2-202ENST00000357604 SPATA1Q5VX52 437 aa9.94□□□□□ -0.82
UPF2-202ENST00000357604 LRRC45Q96CN5 670 aa9.94□□□□□ -0.82
UPF2-202ENST00000357604 TNIP3Q96KP6 325 aa9.94□□□□□ -0.82
UPF2-202ENST00000357604 TMEM175Q9BSA9 504 aa9.94□□□□□ -0.82
UPF2-202ENST00000357604 OLFML3Q9NRN5 406 aa9.94□□□□□ -0.82
UPF2-202ENST00000357604 ITGA11Q9UKX5 1188 aa9.94□□□□□ -0.82
UPF2-202ENST00000357604 CLIC2O15247 247 aa9.94□□□□□ -0.82
UPF2-202ENST00000357604 ADAMTS4O75173 837 aa9.94□□□□□ -0.82
UPF2-202ENST00000357604 GTF2H1P32780 548 aa9.94□□□□□ -0.82
UPF2-202ENST00000357604 MXI1P50539 228 aa9.94□□□□□ -0.82
UPF2-202ENST00000357604 UBASH3AP57075 661 aa9.94□□□□□ -0.82
UPF2-202ENST00000357604 MAP3K21Q5TCX8 1036 aa9.94□□□□□ -0.82
UPF2-202ENST00000357604 IQCEQ6IPM2 695 aa9.94□□□□□ -0.82
UPF2-202ENST00000357604 PDE12Q6L8Q7 609 aaKnown RBP9.94□□□□□ -0.82
UPF2-202ENST00000357604 YAF2Q8IY57 180 aa9.94□□□□□ -0.82
UPF2-202ENST00000357604 BADQ92934 168 aa9.94□□□□□ -0.82
UPF2-202ENST00000357604 KCNJ18B7U540 433 aa9.94□□□□□ -0.82
UPF2-202ENST00000357604 LRG1P02750 347 aa9.94□□□□□ -0.82
UPF2-202ENST00000357604 ATICP31939 592 aa9.94□□□□□ -0.82
UPF2-202ENST00000357604 CYP2C18P33260 490 aa9.94□□□□□ -0.82
UPF2-202ENST00000357604 KCNJ12Q14500 433 aa9.94□□□□□ -0.82
UPF2-202ENST00000357604 STILQ15468 1287 aa9.94□□□□□ -0.82
UPF2-202ENST00000357604 ASIC2Q16515 512 aa9.94□□□□□ -0.82
UPF2-202ENST00000357604 ZSCAN23Q3MJ62 389 aa9.94□□□□□ -0.82
UPF2-202ENST00000357604 ENOSF1Q7L5Y1 443 aa9.94□□□□□ -0.82
UPF2-202ENST00000357604 FILIP1Q7Z7B0 1213 aa9.94□□□□□ -0.82
UPF2-202ENST00000357604 TAF4BQ92750 862 aa9.94□□□□□ -0.82
UPF2-202ENST00000357604 CRISPLD2Q9H0B8 497 aa9.94□□□□□ -0.82
UPF2-202ENST00000357604 PCDHB2Q9Y5E7 798 aa9.94□□□□□ -0.82
UPF2-202ENST00000357604 FGF19O95750 216 aa9.93□□□□□ -0.82
UPF2-202ENST00000357604 SYN1P17600 705 aa9.93□□□□□ -0.82
UPF2-202ENST00000357604 PCSK1P29120 753 aa9.93□□□□□ -0.82
UPF2-202ENST00000357604 VAMP7P51809 220 aa9.93□□□□□ -0.82
UPF2-202ENST00000357604 SLC12A3P55017 1021 aa9.93□□□□□ -0.82
UPF2-202ENST00000357604 ZNF618Q5T7W0 954 aa9.93□□□□□ -0.82
UPF2-202ENST00000357604 HSD17B14Q9BPX1 270 aa9.93□□□□□ -0.82
UPF2-202ENST00000357604 NFKBIZQ9BYH8 718 aa9.93□□□□□ -0.82
UPF2-202ENST00000357604 MAPK8IP1Q9UQF2 711 aa9.93□□□□□ -0.82
UPF2-202ENST00000357604 MYMKA6NI61 221 aa9.93□□□□□ -0.82
UPF2-202ENST00000357604 ZC3H11AO75152 810 aaKnown RBP eCLIP9.93□□□□□ -0.82
UPF2-202ENST00000357604 RHOBTB3O94955 611 aa9.93□□□□□ -0.82
UPF2-202ENST00000357604 CD19P15391 556 aa9.93□□□□□ -0.82
UPF2-202ENST00000357604 NMT1P30419 496 aaKnown RBP9.93□□□□□ -0.82
UPF2-202ENST00000357604 RAPGEF1Q13905 1077 aa9.93□□□□□ -0.82
UPF2-202ENST00000357604 ZNF280DQ6N043 979 aa9.93□□□□□ -0.82
UPF2-202ENST00000357604 FRMD5Q7Z6J6 570 aa9.93□□□□□ -0.82
UPF2-202ENST00000357604 SERINC5Q86VE9 423 aa9.93□□□□□ -0.82
UPF2-202ENST00000357604 SPATA2LQ8IUW3 424 aaPredicted RBP9.93□□□□□ -0.82
UPF2-202ENST00000357604 NCK2O43639 380 aa9.93□□□□□ -0.82
UPF2-202ENST00000357604 XYLBO75191 536 aa9.93□□□□□ -0.82
UPF2-202ENST00000357604 GLRA2P23416 452 aa9.93□□□□□ -0.82
UPF2-202ENST00000357604 RPL9P32969 192 aaKnown RBP9.93□□□□□ -0.82
UPF2-202ENST00000357604 TNNT3P45378 269 aaPredicted RBP9.93□□□□□ -0.82
UPF2-202ENST00000357604 GSDMDP57764 484 aa9.93□□□□□ -0.82
UPF2-202ENST00000357604 CCDC70Q6NSX1 233 aa9.93□□□□□ -0.82
UPF2-202ENST00000357604 ITIH5Q86UX2 942 aa9.93□□□□□ -0.82
UPF2-202ENST00000357604 ASAP3Q8TDY4 903 aa9.93□□□□□ -0.82
UPF2-202ENST00000357604 MKNK1Q9BUB5 465 aa9.93□□□□□ -0.82
UPF2-202ENST00000357604 ASB7Q9H672 318 aa9.93□□□□□ -0.82
UPF2-202ENST00000357604 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP9.93□□□□□ -0.82
UPF2-202ENST00000357604 DPP3Q9NY33 737 aa9.93□□□□□ -0.82
UPF2-202ENST00000357604 TYW5A2RUC4 315 aaKnown RBP9.93□□□□□ -0.82
UPF2-202ENST00000357604 GOLGA8IPA6NC78 632 aa9.93□□□□□ -0.82
UPF2-202ENST00000357604 GOLGA8JA6NMD2 632 aa9.93□□□□□ -0.82
UPF2-202ENST00000357604 EDRF1Q3B7T1 1238 aa9.93□□□□□ -0.82
UPF2-202ENST00000357604 TRPV1Q8NER1 839 aa9.93□□□□□ -0.82
UPF2-202ENST00000357604 DNAJC25Q9H1X3 360 aa9.93□□□□□ -0.82
UPF2-202ENST00000357604 ELAC1Q9H777 363 aaKnown RBP9.93□□□□□ -0.82
UPF2-202ENST00000357604 MRPL17Q9NRX2 175 aaKnown RBP9.93□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms