RNA–Protein interactions for RNA: ENST00000357162.6

VPS13B-202, Transcript of vacuolar protein sorting 13 homolog B, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS13B, Length 14,019 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13B-202ENST00000357162 SPOPLQ6IQ16 392 aa6.94□□□□□ -1.3
VPS13B-202ENST00000357162 DHX40Q8IX18 779 aaKnown RBP6.94□□□□□ -1.3
VPS13B-202ENST00000357162 ADD3Q9UEY8 706 aaKnown RBP6.94□□□□□ -1.3
VPS13B-202ENST00000357162 ORC4O43929 436 aa6.94□□□□□ -1.3
VPS13B-202ENST00000357162 MYBPC2Q14324 1141 aa6.94□□□□□ -1.3
VPS13B-202ENST00000357162 ENC1O14682 589 aa6.94□□□□□ -1.3
VPS13B-202ENST00000357162 RPSAP08865 295 aaKnown RBP6.94□□□□□ -1.3
VPS13B-202ENST00000357162 SRGNP10124 158 aa6.94□□□□□ -1.3
VPS13B-202ENST00000357162 DDIT3P35638 169 aa6.94□□□□□ -1.3
VPS13B-202ENST00000357162 PEX5P50542 639 aa6.94□□□□□ -1.3
VPS13B-202ENST00000357162 ATP2C1P98194 919 aaPredicted RBP6.94□□□□□ -1.3
VPS13B-202ENST00000357162 C2orf54Q08AI8 447 aa6.94□□□□□ -1.3
VPS13B-202ENST00000357162 PIGHQ14442 188 aaPredicted RBP6.94□□□□□ -1.3
VPS13B-202ENST00000357162 LRRC43Q8N309 656 aa6.94□□□□□ -1.3
VPS13B-202ENST00000357162 NAF1Q96HR8 494 aaKnown RBP6.94□□□□□ -1.3
VPS13B-202ENST00000357162 TCP11X1B4DZS4 312 aa6.94□□□□□ -1.3
VPS13B-202ENST00000357162 TRPA1O75762 1119 aa6.94□□□□□ -1.3
VPS13B-202ENST00000357162 CLPTM1O96005 669 aa6.94□□□□□ -1.3
VPS13B-202ENST00000357162 EFNA5P52803 228 aa6.94□□□□□ -1.3
VPS13B-202ENST00000357162 ARMCX5Q6P1M9 558 aa6.94□□□□□ -1.3
VPS13B-202ENST00000357162 ARHGAP22Q7Z5H3 698 aa6.94□□□□□ -1.3
VPS13B-202ENST00000357162 ZNF184Q99676 751 aaPredicted RBP6.94□□□□□ -1.3
VPS13B-202ENST00000357162 ERP44Q9BS26 406 aa6.94□□□□□ -1.3
VPS13B-202ENST00000357162 KCNJ14Q9UNX9 436 aa6.94□□□□□ -1.3
VPS13B-202ENST00000357162 SOX5P35711 763 aa6.94□□□□□ -1.3
VPS13B-202ENST00000357162 VPS41P49754 854 aa6.94□□□□□ -1.3
VPS13B-202ENST00000357162 LVRNQ6Q4G3 990 aa6.94□□□□□ -1.3
VPS13B-202ENST00000357162 ERICH1Q86X53 443 aa6.94□□□□□ -1.3
VPS13B-202ENST00000357162 TEKT4Q8WW24 435 aa6.94□□□□□ -1.3
VPS13B-202ENST00000357162 PPP2R3CQ969Q6 453 aa6.94□□□□□ -1.3
VPS13B-202ENST00000357162 NOD2Q9HC29 1040 aa6.94□□□□□ -1.3
VPS13B-202ENST00000357162 MAPK8IP1Q9UQF2 711 aa6.94□□□□□ -1.3
VPS13B-202ENST00000357162 ATP11BQ9Y2G3 1177 aa6.94□□□□□ -1.3
VPS13B-202ENST00000357162 SOX6P35712 828 aa6.94□□□□□ -1.3
VPS13B-202ENST00000357162 PAPD7Q5XG87 772 aaKnown RBP6.94□□□□□ -1.3
VPS13B-202ENST00000357162 PATL1Q86TB9 770 aaKnown RBP6.94□□□□□ -1.3
VPS13B-202ENST00000357162 GJA10Q969M2 543 aa6.94□□□□□ -1.3
VPS13B-202ENST00000357162 CLIC4Q9Y696 253 aa6.94□□□□□ -1.3
VPS13B-202ENST00000357162 POC1B-GALNT4F8VUJ3 575 aa6.94□□□□□ -1.3
VPS13B-202ENST00000357162 PLCG1P19174 1290 aa6.94□□□□□ -1.3
VPS13B-202ENST00000357162 SGSM1Q2NKQ1 1148 aa6.94□□□□□ -1.3
VPS13B-202ENST00000357162 XRRA1Q6P2D8 792 aa6.94□□□□□ -1.3
VPS13B-202ENST00000357162 CLEC4GQ6UXB4 293 aa6.94□□□□□ -1.3
VPS13B-202ENST00000357162 CD302Q8IX05 232 aa6.94□□□□□ -1.3
VPS13B-202ENST00000357162 FAM133AQ8N9E0 248 aa6.94□□□□□ -1.3
VPS13B-202ENST00000357162 PGM2Q96G03 612 aa6.94□□□□□ -1.3
VPS13B-202ENST00000357162 ANKRD36BP1Q96IX9 119 aa6.94□□□□□ -1.3
VPS13B-202ENST00000357162 NUP85Q9BW27 656 aa6.94□□□□□ -1.3
VPS13B-202ENST00000357162 TMCO1Q9UM00 188 aa6.94□□□□□ -1.3
VPS13B-202ENST00000357162 L1RE1Q9UN81 338 aa6.94□□□□□ -1.3
VPS13B-202ENST00000357162 PSMD3O43242 534 aa6.94□□□□□ -1.3
VPS13B-202ENST00000357162 FOXO3O43524 673 aa6.94□□□□□ -1.3
VPS13B-202ENST00000357162 RPLP2P05387 115 aaKnown RBP6.94□□□□□ -1.3
VPS13B-202ENST00000357162 ITGA1P56199 1179 aa6.94□□□□□ -1.3
VPS13B-202ENST00000357162 GABPAQ06546 454 aa6.94□□□□□ -1.3
VPS13B-202ENST00000357162 PABPC4Q13310 644 aaKnown RBP eCLIP6.94□□□□□ -1.33e-6■■■■□ 26.6
VPS13B-202ENST00000357162 BLZF1Q9H2G9 400 aa6.94□□□□□ -1.3
VPS13B-202ENST00000357162 SLC39A2Q9NP94 309 aa6.94□□□□□ -1.3
VPS13B-202ENST00000357162 SLC24A2Q9UI40 661 aa6.94□□□□□ -1.3
VPS13B-202ENST00000357162 APPL1Q9UKG1 709 aa6.94□□□□□ -1.3
VPS13B-202ENST00000357162 NEDD4P46934 1319 aa6.94□□□□□ -1.3
VPS13B-202ENST00000357162 ANGPT2O15123 496 aa6.94□□□□□ -1.3
VPS13B-202ENST00000357162 DNAJB2P25686 324 aa6.94□□□□□ -1.3
VPS13B-202ENST00000357162 PKN2Q16513 984 aaKnown RBP6.94□□□□□ -1.3
VPS13B-202ENST00000357162 VPS50Q96JG6 964 aa6.94□□□□□ -1.3
VPS13B-202ENST00000357162 RNPC3Q96LT9 517 aaKnown RBP6.94□□□□□ -1.3
VPS13B-202ENST00000357162 C17orf75Q9HAS0 396 aa6.94□□□□□ -1.3
VPS13B-202ENST00000357162 SLC40A1Q9NP59 571 aa6.94□□□□□ -1.3
VPS13B-202ENST00000357162 FHOD1Q9Y613 1164 aa6.94□□□□□ -1.3
VPS13B-202ENST00000357162 TOM1L1O75674 476 aa6.94□□□□□ -1.3
VPS13B-202ENST00000357162 HSPA4LO95757 839 aa6.94□□□□□ -1.3
VPS13B-202ENST00000357162 CYB5RLQ6IPT4 315 aa6.94□□□□□ -1.3
VPS13B-202ENST00000357162 TRIM59Q8IWR1 403 aa6.94□□□□□ -1.3
VPS13B-202ENST00000357162 ARHGEF1Q92888 912 aaKnown RBP6.94□□□□□ -1.3
VPS13B-202ENST00000357162 MRPL48Q96GC5 212 aaKnown RBP6.94□□□□□ -1.3
VPS13B-202ENST00000357162 C1orf50Q9BV19 199 aa6.94□□□□□ -1.3
VPS13B-202ENST00000357162 YIPF3Q9GZM5 350 aa6.94□□□□□ -1.3
VPS13B-202ENST00000357162 SLC38A10Q9HBR0 1119 aa6.94□□□□□ -1.3
VPS13B-202ENST00000357162 CDV3Q9UKY7 258 aaKnown RBP6.94□□□□□ -1.3
VPS13B-202ENST00000357162 KRT24Q2M2I5 525 aa6.93□□□□□ -1.3
VPS13B-202ENST00000357162 ZCWPW2Q504Y3 356 aa6.93□□□□□ -1.3
VPS13B-202ENST00000357162 DACT3Q96B18 629 aaPredicted RBP6.93□□□□□ -1.3
VPS13B-202ENST00000357162 CAAP1Q9H8G2 361 aa6.93□□□□□ -1.3
VPS13B-202ENST00000357162 ETAA1Q9NY74 926 aa6.93□□□□□ -1.3
VPS13B-202ENST00000357162 ZNF229Q9UJW7 825 aa6.93□□□□□ -1.3
VPS13B-202ENST00000357162 KIAA1024Q9UPX6 916 aa6.93□□□□□ -1.3
VPS13B-202ENST00000357162 CHMP2BQ9UQN3 213 aa6.93□□□□□ -1.3
VPS13B-202ENST00000357162 PALLDQ8WX93 1383 aa6.93□□□□□ -1.3
VPS13B-202ENST00000357162 GRK2P25098 689 aa6.93□□□□□ -1.3
VPS13B-202ENST00000357162 IFRD2Q12894 506 aaPredicted RBP6.93□□□□□ -1.3
VPS13B-202ENST00000357162 EFTUD2Q15029 972 aaKnown RBP eCLIP6.93□□□□□ -1.34e-6■■■■□ 25.8
VPS13B-202ENST00000357162 CHD2O14647 1828 aaKnown RBP6.93□□□□□ -1.3
VPS13B-202ENST00000357162 KRT1P04264 644 aa6.93□□□□□ -1.3
VPS13B-202ENST00000357162 KNOP1Q1ED39 458 aaKnown RBP6.93□□□□□ -1.3
VPS13B-202ENST00000357162 BCORL1Q5H9F3 1711 aa6.93□□□□□ -1.3
VPS13B-202ENST00000357162 PTPN4P29074 926 aa6.93□□□□□ -1.3
VPS13B-202ENST00000357162 TNFAIP2Q03169 654 aa6.93□□□□□ -1.3
VPS13B-202ENST00000357162 MTA1Q13330 715 aa6.93□□□□□ -1.3
VPS13B-202ENST00000357162 ADAM30Q9UKF2 790 aa6.93□□□□□ -1.3
VPS13B-202ENST00000357162 ADGRA2Q96PE1 1338 aa6.93□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms