RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 MEA1Q16626 185 aa2.62□□□□□ -1.99
VPS54-202ENST00000354504 MTERF2Q49AM1 385 aa2.62□□□□□ -1.99
VPS54-202ENST00000354504 TMEM201Q5SNT2 666 aa2.62□□□□□ -1.99
VPS54-202ENST00000354504 C1orf220Q5T0J3 134 aa2.62□□□□□ -1.99
VPS54-202ENST00000354504 PPP4R3AQ6IN85 833 aa2.62□□□□□ -1.99
VPS54-202ENST00000354504 DENND5AQ6IQ26 1287 aa2.62□□□□□ -1.99
VPS54-202ENST00000354504 VHLLQ6RSH7 139 aa2.62□□□□□ -1.99
VPS54-202ENST00000354504 STRA8Q7Z7C7 330 aa2.62□□□□□ -1.99
VPS54-202ENST00000354504 MAPKAPK5Q8IW41 473 aa2.62□□□□□ -1.99
VPS54-202ENST00000354504 ADGRF4Q8IZF3 695 aa2.62□□□□□ -1.99
VPS54-202ENST00000354504 ADSSL1Q8N142 457 aa2.62□□□□□ -1.99
VPS54-202ENST00000354504 RNF214Q8ND24 703 aa2.62□□□□□ -1.99
VPS54-202ENST00000354504 ADCY4Q8NFM4 1077 aa2.62□□□□□ -1.99
VPS54-202ENST00000354504 ENOX1Q8TC92 643 aaKnown RBP2.62□□□□□ -1.99
VPS54-202ENST00000354504 CORO1BQ9BR76 489 aa2.62□□□□□ -1.99
VPS54-202ENST00000354504 MCMBPQ9BTE3 642 aa2.62□□□□□ -1.99
VPS54-202ENST00000354504 NAA15Q9BXJ9 866 aaKnown RBP2.62□□□□□ -1.99
VPS54-202ENST00000354504 SLC26A6Q9BXS9 759 aa2.62□□□□□ -1.99
VPS54-202ENST00000354504 XPO4Q9C0E2 1151 aaKnown RBP2.62□□□□□ -1.99
VPS54-202ENST00000354504 SIX2Q9NPC8 291 aa2.62□□□□□ -1.99
VPS54-202ENST00000354504 RIC8AQ9NPQ8 531 aa2.62□□□□□ -1.99
VPS54-202ENST00000354504 TPSG1Q9NRR2 321 aa2.62□□□□□ -1.99
VPS54-202ENST00000354504 SAMSN1Q9NSI8 373 aaKnown RBP2.62□□□□□ -1.99
VPS54-202ENST00000354504 RBM28Q9NW13 759 aaKnown RBP2.62□□□□□ -1.99
VPS54-202ENST00000354504 CRIM1Q9NZV1 1036 aa2.62□□□□□ -1.99
VPS54-202ENST00000354504 SIRPGQ9P1W8 387 aa2.62□□□□□ -1.99
VPS54-202ENST00000354504 HELZP42694 1942 aaKnown RBP2.62□□□□□ -1.99
VPS54-202ENST00000354504 DOCK4Q8N1I0 1966 aa2.62□□□□□ -1.99
VPS54-202ENST00000354504 A0A1W2PQU0 124 aa2.61□□□□□ -1.99
VPS54-202ENST00000354504 SHISA3A0PJX4 238 aa2.61□□□□□ -1.99
VPS54-202ENST00000354504 IFIT3O14879 490 aaKnown RBP2.61□□□□□ -1.99
VPS54-202ENST00000354504 HYAL3O43820 417 aaPredicted RBP2.61□□□□□ -1.99
VPS54-202ENST00000354504 UFL1O94874 794 aa2.61□□□□□ -1.99
VPS54-202ENST00000354504 HNRNPH3P31942 346 aaKnown RBP2.61□□□□□ -1.99
VPS54-202ENST00000354504 HSD17B4P51659 736 aa2.61□□□□□ -1.99
VPS54-202ENST00000354504 MAPK7Q13164 816 aa2.61□□□□□ -1.99
VPS54-202ENST00000354504 KCNB1Q14721 858 aa2.61□□□□□ -1.99
VPS54-202ENST00000354504 Q4G0T1 1027 aa2.61□□□□□ -1.99
VPS54-202ENST00000354504 ZNF572Q7Z3I7 529 aaPredicted RBP2.61□□□□□ -1.99
VPS54-202ENST00000354504 KIAA0907Q7Z7F0 614 aaPredicted RBP2.61□□□□□ -1.99
VPS54-202ENST00000354504 DAW1Q8N136 415 aa2.61□□□□□ -1.99
VPS54-202ENST00000354504 FSIP1Q8NA03 581 aa2.61□□□□□ -1.99
VPS54-202ENST00000354504 LMO3Q8TAP4 145 aa2.61□□□□□ -1.99
VPS54-202ENST00000354504 VWCEQ96DN2 955 aa2.61□□□□□ -1.99
VPS54-202ENST00000354504 C7orf25Q9BPX7 421 aa2.61□□□□□ -1.99
VPS54-202ENST00000354504 GMIPQ9P107 970 aa2.61□□□□□ -1.99
VPS54-202ENST00000354504 CFAP45Q9UL16 551 aa2.61□□□□□ -1.99
VPS54-202ENST00000354504 KCNH3Q9ULD8 1083 aa2.61□□□□□ -1.99
VPS54-202ENST00000354504 ENPP3O14638 875 aa2.61□□□□□ -1.99
VPS54-202ENST00000354504 FAM189A1O60320 539 aa2.61□□□□□ -1.99
VPS54-202ENST00000354504 TLR2O60603 784 aa2.61□□□□□ -1.99
VPS54-202ENST00000354504 ASMTLO95671 621 aa2.61□□□□□ -1.99
VPS54-202ENST00000354504 BPNT1O95861 308 aa2.61□□□□□ -1.99
VPS54-202ENST00000354504 EDN1P05305 212 aa2.61□□□□□ -1.99
VPS54-202ENST00000354504 GOLGA8HP0CJ92 632 aa2.61□□□□□ -1.99
VPS54-202ENST00000354504 YBX3P16989 372 aaKnown RBP eCLIP2.61□□□□□ -1.993e-7■■■□□ 17.3
VPS54-202ENST00000354504 ZNF165P49910 485 aa2.61□□□□□ -1.99
VPS54-202ENST00000354504 CASP5P51878 434 aa2.61□□□□□ -1.99
VPS54-202ENST00000354504 NCBP1Q09161 790 aaKnown RBP2.61□□□□□ -1.99
VPS54-202ENST00000354504 CDK5R2Q13319 367 aa2.61□□□□□ -1.99
VPS54-202ENST00000354504 STX1AQ16623 288 aa2.61□□□□□ -1.99
VPS54-202ENST00000354504 AOC3Q16853 763 aa2.61□□□□□ -1.99
VPS54-202ENST00000354504 RILPL1Q5EBL4 403 aa2.61□□□□□ -1.99
VPS54-202ENST00000354504 MFSD14BQ5SR56 506 aa2.61□□□□□ -1.99
VPS54-202ENST00000354504 CENPPQ6IPU0 288 aa2.61□□□□□ -1.99
VPS54-202ENST00000354504 MAMDC4Q6UXC1 1216 aa2.61□□□□□ -1.99
VPS54-202ENST00000354504 RAD9BQ6WBX8 426 aa2.61□□□□□ -1.99
VPS54-202ENST00000354504 FGD2Q7Z6J4 655 aa2.61□□□□□ -1.99
VPS54-202ENST00000354504 FILIP1Q7Z7B0 1213 aa2.61□□□□□ -1.99
VPS54-202ENST00000354504 DTX1Q86Y01 620 aa2.61□□□□□ -1.99
VPS54-202ENST00000354504 MYRIPQ8NFW9 859 aa2.61□□□□□ -1.99
VPS54-202ENST00000354504 ESR2Q92731 530 aa2.61□□□□□ -1.99
VPS54-202ENST00000354504 VPS33BQ9H267 617 aa2.61□□□□□ -1.99
VPS54-202ENST00000354504 MRPL44Q9H9J2 332 aaKnown RBP2.61□□□□□ -1.99
VPS54-202ENST00000354504 CABP5Q9NP86 173 aa2.61□□□□□ -1.99
VPS54-202ENST00000354504 NYAP2Q9P242 653 aa2.61□□□□□ -1.99
VPS54-202ENST00000354504 CCDC39Q9UFE4 941 aa2.61□□□□□ -1.99
VPS54-202ENST00000354504 RAPGEFL1Q9UHV5 662 aa2.61□□□□□ -1.99
VPS54-202ENST00000354504 AP4E1Q9UPM8 1137 aa2.61□□□□□ -1.99
VPS54-202ENST00000354504 COL4A3Q01955 1670 aa2.61□□□□□ -1.99
VPS54-202ENST00000354504 KIAA1549LQ6ZVL6 1849 aa2.61□□□□□ -1.99
VPS54-202ENST00000354504 SHROOM3Q8TF72 1996 aa2.61□□□□□ -1.99
VPS54-202ENST00000354504 ZNF541Q9H0D2 1346 aa2.61□□□□□ -1.99
VPS54-202ENST00000354504 ANKRD36A6QL64 1941 aa2.61□□□□□ -1.99
VPS54-202ENST00000354504 LEFTY1O75610 366 aa2.61□□□□□ -1.99
VPS54-202ENST00000354504 CNMDO75829 334 aa2.61□□□□□ -1.99
VPS54-202ENST00000354504 ZRANB2O95218 330 aaKnown RBP eCLIP2.61□□□□□ -1.99
VPS54-202ENST00000354504 TIAF1O95411 115 aa2.61□□□□□ -1.99
VPS54-202ENST00000354504 TFRCP02786 760 aaKnown RBP2.61□□□□□ -1.99
VPS54-202ENST00000354504 C6orf222P0C671 652 aaPredicted RBP2.61□□□□□ -1.99
VPS54-202ENST00000354504 ADH5P11766 374 aa2.61□□□□□ -1.99
VPS54-202ENST00000354504 SPINK2P20155 84 aa2.61□□□□□ -1.99
VPS54-202ENST00000354504 CDC25AP30304 524 aa2.61□□□□□ -1.99
VPS54-202ENST00000354504 IARSP41252 1262 aaKnown RBP2.61□□□□□ -1.99
VPS54-202ENST00000354504 PRCPP42785 496 aa2.61□□□□□ -1.99
VPS54-202ENST00000354504 FXR1P51114 621 aaKnown RBP eCLIP2.61□□□□□ -1.99
VPS54-202ENST00000354504 ETF1P62495 437 aaKnown RBP2.61□□□□□ -1.99
VPS54-202ENST00000354504 SSRP1Q08945 709 aaKnown RBP2.61□□□□□ -1.99
VPS54-202ENST00000354504 MTF1Q14872 753 aa2.61□□□□□ -1.99
VPS54-202ENST00000354504 NOLC1Q14978 699 aaKnown RBP eCLIP2.61□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms