RNA–Protein interactions for RNA: ENST00000354497.4

RTN3-204, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 1,407 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-204ENST00000354497 ITGA4P13612 1032 aa12.53□□□□□ -0.4
RTN3-204ENST00000354497 RPL17P18621 184 aaKnown RBP12.53□□□□□ -0.4
RTN3-204ENST00000354497 JAK3P52333 1124 aa12.53□□□□□ -0.4
RTN3-204ENST00000354497 NTHL1P78549 312 aa12.53□□□□□ -0.4
RTN3-204ENST00000354497 PPM1JQ5JR12 505 aa12.53□□□□□ -0.4
RTN3-204ENST00000354497 MIER3Q7Z3K6 550 aa12.53□□□□□ -0.4
RTN3-204ENST00000354497 GRASPQ7Z6J2 395 aaPredicted RBP12.53□□□□□ -0.4
RTN3-204ENST00000354497 HDAC7Q8WUI4 952 aa12.53□□□□□ -0.4
RTN3-204ENST00000354497 CRYGNQ8WXF5 182 aa12.53□□□□□ -0.4
RTN3-204ENST00000354497 EPC1Q9H2F5 836 aa12.53□□□□□ -0.4
RTN3-204ENST00000354497 RXFP1Q9HBX9 757 aa12.53□□□□□ -0.4
RTN3-204ENST00000354497 AGPAT5Q9NUQ2 364 aa12.53□□□□□ -0.4
RTN3-204ENST00000354497 RAB23Q9ULC3 237 aa12.53□□□□□ -0.4
RTN3-204ENST00000354497 POLIQ9UNA4 740 aa12.53□□□□□ -0.4
RTN3-204ENST00000354497 MSH4O15457 936 aa12.52□□□□□ -0.41
RTN3-204ENST00000354497 LETM1O95202 739 aaPredicted RBP12.52□□□□□ -0.41
RTN3-204ENST00000354497 SFNP31947 248 aa12.52□□□□□ -0.41
RTN3-204ENST00000354497 IRX6P78412 446 aaPredicted RBP12.52□□□□□ -0.41
RTN3-204ENST00000354497 DSG1Q02413 1049 aa12.52□□□□□ -0.41
RTN3-204ENST00000354497 PRKCQQ04759 706 aa12.52□□□□□ -0.41
RTN3-204ENST00000354497 SPEM2Q0P670 501 aa12.52□□□□□ -0.41
RTN3-204ENST00000354497 TARBP2Q15633 366 aaKnown RBP12.52□□□□□ -0.41
RTN3-204ENST00000354497 XKR3Q5GH77 459 aa12.52□□□□□ -0.41
RTN3-204ENST00000354497 ZBTB41Q5SVQ8 909 aa12.52□□□□□ -0.41
RTN3-204ENST00000354497 LRCH2Q5VUJ6 765 aa12.52□□□□□ -0.41
RTN3-204ENST00000354497 SGMS1Q86VZ5 419 aa12.52□□□□□ -0.41
RTN3-204ENST00000354497 BORCS6Q96GS4 357 aa12.52□□□□□ -0.41
RTN3-204ENST00000354497 TCEANC2Q96MN5 208 aa12.52□□□□□ -0.41
RTN3-204ENST00000354497 KXD1Q9BQD3 176 aa12.52□□□□□ -0.41
RTN3-204ENST00000354497 COLEC11Q9BWP8 271 aa12.52□□□□□ -0.41
RTN3-204ENST00000354497 APOL6Q9BWW8 343 aa12.52□□□□□ -0.41
RTN3-204ENST00000354497 PARD6AQ9NPB6 346 aa12.52□□□□□ -0.41
RTN3-204ENST00000354497 LTB4R2Q9NPC1 389 aa12.52□□□□□ -0.41
RTN3-204ENST00000354497 TMEM51Q9NW97 253 aa12.52□□□□□ -0.41
RTN3-204ENST00000354497 RALYQ9UKM9 306 aaKnown RBP12.52□□□□□ -0.41
RTN3-204ENST00000354497 CDH7Q9ULB5 785 aa12.52□□□□□ -0.41
RTN3-204ENST00000354497 OTOGLQ3ZCN5 2332 aa12.52□□□□□ -0.41
RTN3-204ENST00000354497 CEP250Q9BV73 2442 aa12.51□□□□□ -0.41
RTN3-204ENST00000354497 FANCMQ8IYD8 2048 aa12.51□□□□□ -0.41
RTN3-204ENST00000354497 TBC1D4O60343 1298 aa12.51□□□□□ -0.41
RTN3-204ENST00000354497 SRGAP2CP0DJJ0 459 aa12.51□□□□□ -0.41
RTN3-204ENST00000354497 MLH1P40692 756 aa12.51□□□□□ -0.41
RTN3-204ENST00000354497 MAGEA9P43362 315 aa12.51□□□□□ -0.41
RTN3-204ENST00000354497 SCNN1GP51170 649 aa12.51□□□□□ -0.41
RTN3-204ENST00000354497 FUT2Q10981 343 aa12.51□□□□□ -0.41
RTN3-204ENST00000354497 CREB3L3Q68CJ9 461 aa12.51□□□□□ -0.41
RTN3-204ENST00000354497 PLA2G4FQ68DD2 849 aa12.51□□□□□ -0.41
RTN3-204ENST00000354497 TPRG1Q6ZUI0 275 aa12.51□□□□□ -0.41
RTN3-204ENST00000354497 MTSS1LQ765P7 747 aa12.51□□□□□ -0.41
RTN3-204ENST00000354497 MRPL10Q7Z7H8 261 aaKnown RBP12.51□□□□□ -0.41
RTN3-204ENST00000354497 COLGALT2Q8IYK4 626 aa12.51□□□□□ -0.41
RTN3-204ENST00000354497 CCDC12Q8WUD4 166 aaPredicted RBP12.51□□□□□ -0.41
RTN3-204ENST00000354497 ARID3AQ99856 593 aa12.51□□□□□ -0.41
RTN3-204ENST00000354497 NIFKQ9BYG3 293 aaKnown RBP12.51□□□□□ -0.41
RTN3-204ENST00000354497 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP12.51□□□□□ -0.41
RTN3-204ENST00000354497 COL4A3BPQ9Y5P4 624 aa12.51□□□□□ -0.41
RTN3-204ENST00000354497 DYNC1LI1Q9Y6G9 523 aaKnown RBP12.51□□□□□ -0.41
RTN3-204ENST00000354497 ZFP37Q9Y6Q3 630 aaPredicted RBP12.51□□□□□ -0.41
RTN3-204ENST00000354497 MIA3Q5JRA6 1907 aa12.5□□□□□ -0.41
RTN3-204ENST00000354497 IGKV6-21A0A0C4DH24 114 aa12.5□□□□□ -0.41
RTN3-204ENST00000354497 KLF18A0A0U1RQI7 1052 aa12.5□□□□□ -0.41
RTN3-204ENST00000354497 LOC105378220A0A1B0GUY1 285 aaPredicted RBP12.5□□□□□ -0.41
RTN3-204ENST00000354497 CCL16O15467 120 aa12.5□□□□□ -0.41
RTN3-204ENST00000354497 MAFO75444 373 aaPredicted RBP12.5□□□□□ -0.41
RTN3-204ENST00000354497 ZMYND10O75800 440 aa12.5□□□□□ -0.41
RTN3-204ENST00000354497 TARSP26639 723 aaKnown RBP12.5□□□□□ -0.41
RTN3-204ENST00000354497 PFKPQ01813 784 aa12.5□□□□□ -0.41
RTN3-204ENST00000354497 PFKFB3Q16875 520 aaPredicted RBP12.5□□□□□ -0.41
RTN3-204ENST00000354497 USP41Q3LFD5 358 aa12.5□□□□□ -0.41
RTN3-204ENST00000354497 UBXN11Q5T124 520 aa12.5□□□□□ -0.41
RTN3-204ENST00000354497 LIN9Q5TKA1 542 aa12.5□□□□□ -0.41
RTN3-204ENST00000354497 PRR23BQ6ZRT6 265 aa12.5□□□□□ -0.41
RTN3-204ENST00000354497 ZBTB44Q8NCP5 570 aa12.5□□□□□ -0.41
RTN3-204ENST00000354497 RABGGTAQ92696 567 aa12.5□□□□□ -0.41
RTN3-204ENST00000354497 LENG9Q96B70 501 aa12.5□□□□□ -0.41
RTN3-204ENST00000354497 GAD1Q99259 594 aa12.5□□□□□ -0.41
RTN3-204ENST00000354497 RIT2Q99578 217 aa12.5□□□□□ -0.41
RTN3-204ENST00000354497 JPH2Q9BR39 696 aaPredicted RBP12.5□□□□□ -0.41
RTN3-204ENST00000354497 DDX23Q9BUQ8 820 aaKnown RBP12.5□□□□□ -0.41
RTN3-204ENST00000354497 PHF20Q9BVI0 1012 aa12.5□□□□□ -0.41
RTN3-204ENST00000354497 OSBPL6Q9BZF3 934 aa12.5□□□□□ -0.41
RTN3-204ENST00000354497 UBN1Q9NPG3 1134 aa12.5□□□□□ -0.41
RTN3-204ENST00000354497 ARL5CA6NH57 179 aa12.49□□□□□ -0.41
RTN3-204ENST00000354497 ESPNB1AK53 854 aa12.49□□□□□ -0.41
RTN3-204ENST00000354497 NCAM2O15394 837 aa12.49□□□□□ -0.41
RTN3-204ENST00000354497 LILRB5O75023 590 aa12.49□□□□□ -0.41
RTN3-204ENST00000354497 GNA11P29992 359 aa12.49□□□□□ -0.41
RTN3-204ENST00000354497 CDC27P30260 824 aa12.49□□□□□ -0.41
RTN3-204ENST00000354497 CIITAP33076 1130 aa12.49□□□□□ -0.41
RTN3-204ENST00000354497 CREMQ03060 361 aa12.49□□□□□ -0.41
RTN3-204ENST00000354497 PPM1LQ5SGD2 360 aa12.49□□□□□ -0.41
RTN3-204ENST00000354497 FUT10Q6P4F1 479 aa12.49□□□□□ -0.41
RTN3-204ENST00000354497 PRSS55Q6UWB4 352 aaPredicted RBP12.49□□□□□ -0.41
RTN3-204ENST00000354497 RNF168Q8IYW5 571 aaPredicted RBP12.49□□□□□ -0.41
RTN3-204ENST00000354497 SMG8Q8ND04 991 aaKnown RBP12.49□□□□□ -0.41
RTN3-204ENST00000354497 CNNM3Q8NE01 707 aa12.49□□□□□ -0.41
RTN3-204ENST00000354497 NETO1Q8TDF5 533 aa12.49□□□□□ -0.41
RTN3-204ENST00000354497 SLC5A5Q92911 643 aa12.49□□□□□ -0.41
RTN3-204ENST00000354497 FGF13Q92913 245 aa12.49□□□□□ -0.41
RTN3-204ENST00000354497 ZFP42Q96MM3 310 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms