RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 CEP120Q8N960 986 aa24.25■■□□□ 1.47
SHMT1-203ENST00000354098 APOL6Q9BWW8 343 aa24.25■■□□□ 1.47
SHMT1-203ENST00000354098 UBE4BO95155 1302 aa24.24■■□□□ 1.47
SHMT1-203ENST00000354098 TGFB1I1O43294 461 aa24.24■■□□□ 1.47
SHMT1-203ENST00000354098 GJB5O95377 273 aa24.24■■□□□ 1.47
SHMT1-203ENST00000354098 EOMESO95936 686 aa24.24■■□□□ 1.47
SHMT1-203ENST00000354098 SKIP12755 728 aa24.24■■□□□ 1.47
SHMT1-203ENST00000354098 MATR3P43243 847 aaKnown RBP eCLIP24.24■■□□□ 1.47
SHMT1-203ENST00000354098 GATMP50440 423 aa24.24■■□□□ 1.47
SHMT1-203ENST00000354098 MCL1Q07820 350 aa24.24■■□□□ 1.47
SHMT1-203ENST00000354098 MORC3Q14149 939 aa24.24■■□□□ 1.47
SHMT1-203ENST00000354098 SEZ6Q53EL9 994 aa24.24■■□□□ 1.47
SHMT1-203ENST00000354098 AGMOQ6ZNB7 445 aa24.24■■□□□ 1.47
SHMT1-203ENST00000354098 STAG3L1P0CL83 205 aa24.24■■□□□ 1.47
SHMT1-203ENST00000354098 MCF2P10911 925 aa24.24■■□□□ 1.47
SHMT1-203ENST00000354098 AKAP5P24588 427 aa24.24■■□□□ 1.47
SHMT1-203ENST00000354098 NOLC1Q14978 699 aaKnown RBP eCLIP24.24■■□□□ 1.47
SHMT1-203ENST00000354098 KNOP1Q1ED39 458 aaKnown RBP24.24■■□□□ 1.47
SHMT1-203ENST00000354098 DCAF4L1Q3SXM0 396 aa24.24■■□□□ 1.47
SHMT1-203ENST00000354098 TMEM192Q8IY95 271 aa24.24■■□□□ 1.47
SHMT1-203ENST00000354098 ZBED2Q9BTP6 218 aa24.24■■□□□ 1.47
SHMT1-203ENST00000354098 RNF19AQ9NV58 838 aa24.24■■□□□ 1.47
SHMT1-203ENST00000354098 SNTG2Q9NY99 539 aa24.24■■□□□ 1.47
SHMT1-203ENST00000354098 TMEM63CQ9P1W3 806 aa24.24■■□□□ 1.47
SHMT1-203ENST00000354098 STYXL1Q9Y6J8 313 aa24.24■■□□□ 1.47
SHMT1-203ENST00000354098 A0A0B4J269 797 aa24.23■■□□□ 1.47
SHMT1-203ENST00000354098 DGKIO75912 1065 aa24.23■■□□□ 1.47
SHMT1-203ENST00000354098 PRCPP42785 496 aa24.23■■□□□ 1.47
SHMT1-203ENST00000354098 OSTNP61366 133 aa24.23■■□□□ 1.47
SHMT1-203ENST00000354098 NFKBIBQ15653 356 aa24.23■■□□□ 1.47
SHMT1-203ENST00000354098 THNSL1Q8IYQ7 743 aa24.23■■□□□ 1.47
SHMT1-203ENST00000354098 GBP3Q9H0R5 595 aa24.23■■□□□ 1.47
SHMT1-203ENST00000354098 HSFX4A0A1B0GTS1 333 aaPredicted RBP24.22■■□□□ 1.47
SHMT1-203ENST00000354098 HSFX3A0A1B0GWH4 333 aaPredicted RBP24.22■■□□□ 1.47
SHMT1-203ENST00000354098 ITGA4P13612 1032 aa24.22■■□□□ 1.47
SHMT1-203ENST00000354098 CLLU1OSQ5K130 101 aa24.22■■□□□ 1.47
SHMT1-203ENST00000354098 GUF1Q8N442 669 aaKnown RBP24.22■■□□□ 1.47
SHMT1-203ENST00000354098 POMGNT1Q8WZA1 660 aa24.22■■□□□ 1.47
SHMT1-203ENST00000354098 PGBD4Q96DM1 585 aa24.22■■□□□ 1.47
SHMT1-203ENST00000354098 CBWD1Q9BRT8 395 aa24.22■■□□□ 1.47
SHMT1-203ENST00000354098 KCTD10Q9H3F6 313 aa24.22■■□□□ 1.47
SHMT1-203ENST00000354098 A0A1W2PPC1 479 aa24.21■■□□□ 1.47
SHMT1-203ENST00000354098 MYOGP15173 224 aa24.21■■□□□ 1.47
SHMT1-203ENST00000354098 PTMSP20962 102 aa24.21■■□□□ 1.47
SHMT1-203ENST00000354098 PBX2P40425 430 aa24.21■■□□□ 1.47
SHMT1-203ENST00000354098 ZBTB41Q5SVQ8 909 aa24.21■■□□□ 1.47
SHMT1-203ENST00000354098 CAVIN1Q6NZI2 390 aaKnown RBP24.21■■□□□ 1.47
SHMT1-203ENST00000354098 ZSWIM2Q8NEG5 633 aa24.21■■□□□ 1.47
SHMT1-203ENST00000354098 MSTO1Q9BUK6 570 aa24.21■■□□□ 1.47
SHMT1-203ENST00000354098 TLL1O43897 1013 aa24.21■■□□□ 1.47
SHMT1-203ENST00000354098 FAM189A1O60320 539 aa24.21■■□□□ 1.47
SHMT1-203ENST00000354098 CD44P16070 742 aaKnown RBP24.21■■□□□ 1.47
SHMT1-203ENST00000354098 AFF1P51825 1210 aaKnown RBP24.21■■□□□ 1.47
SHMT1-203ENST00000354098 KLHL40Q2TBA0 621 aa24.21■■□□□ 1.47
SHMT1-203ENST00000354098 CCDC183Q5T5S1 534 aa24.21■■□□□ 1.47
SHMT1-203ENST00000354098 SLFN12LQ6IEE8 588 aa24.21■■□□□ 1.47
SHMT1-203ENST00000354098 APBB1IPQ7Z5R6 666 aaPredicted RBP24.21■■□□□ 1.47
SHMT1-203ENST00000354098 HELQQ8TDG4 1101 aa24.21■■□□□ 1.47
SHMT1-203ENST00000354098 ZNF689Q96CS4 500 aaPredicted RBP24.21■■□□□ 1.47
SHMT1-203ENST00000354098 CXCL16Q9H2A7 254 aa24.21■■□□□ 1.47
SHMT1-203ENST00000354098 PCIF1Q9H4Z3 704 aa24.21■■□□□ 1.47
SHMT1-203ENST00000354098 RC3H2Q9HBD1 1191 aaKnown RBP24.21■■□□□ 1.47
SHMT1-203ENST00000354098 AGPAT3Q9NRZ7 376 aa24.21■■□□□ 1.47
SHMT1-203ENST00000354098 RNF216Q9NWF9 866 aaPredicted RBP24.21■■□□□ 1.47
SHMT1-203ENST00000354098 KLK14Q9P0G3 267 aa24.21■■□□□ 1.47
SHMT1-203ENST00000354098 PARP2Q9UGN5 583 aa24.21■■□□□ 1.47
SHMT1-203ENST00000354098 CLIC2O15247 247 aa24.2■■□□□ 1.46
SHMT1-203ENST00000354098 TNFSF9P41273 254 aa24.2■■□□□ 1.46
SHMT1-203ENST00000354098 GRM5P41594 1212 aa24.2■■□□□ 1.46
SHMT1-203ENST00000354098 HTRA4P83105 476 aaPredicted RBP24.2■■□□□ 1.46
SHMT1-203ENST00000354098 RBM43Q6ZSC3 357 aaKnown RBP24.2■■□□□ 1.46
SHMT1-203ENST00000354098 YME1L1Q96TA2 773 aa24.2■■□□□ 1.46
SHMT1-203ENST00000354098 RAD9AQ99638 391 aa24.2■■□□□ 1.46
SHMT1-203ENST00000354098 RSAD1Q9HA92 442 aa24.2■■□□□ 1.46
SHMT1-203ENST00000354098 COL4A6Q14031 1691 aa24.2■■□□□ 1.46
SHMT1-203ENST00000354098 OFD1O75665 1012 aa24.19■■□□□ 1.46
SHMT1-203ENST00000354098 RECQL4O94761 1208 aa24.19■■□□□ 1.46
SHMT1-203ENST00000354098 PAN2Q504Q3 1202 aaKnown RBP24.19■■□□□ 1.46
SHMT1-203ENST00000354098 COBLL1Q53SF7 1204 aa24.19■■□□□ 1.46
SHMT1-203ENST00000354098 ARMCX5Q6P1M9 558 aa24.19■■□□□ 1.46
SHMT1-203ENST00000354098 ADSSL1Q8N142 457 aa24.19■■□□□ 1.46
SHMT1-203ENST00000354098 TRIML1Q8N9V2 468 aa24.19■■□□□ 1.46
SHMT1-203ENST00000354098 CASD1Q96PB1 797 aa24.19■■□□□ 1.46
SHMT1-203ENST00000354098 PBX4Q9BYU1 374 aa24.19■■□□□ 1.46
SHMT1-203ENST00000354098 AGO2Q9UKV8 859 aaKnown RBP24.19■■□□□ 1.46
SHMT1-203ENST00000354098 LCHNA4D1U4 455 aa24.18■■□□□ 1.46
SHMT1-203ENST00000354098 OGTO15294 1046 aa24.18■■□□□ 1.46
SHMT1-203ENST00000354098 MEFVO15553 781 aaPredicted RBP24.18■■□□□ 1.46
SHMT1-203ENST00000354098 KIF20AO95235 890 aa24.18■■□□□ 1.46
SHMT1-203ENST00000354098 GARTP22102 1010 aa24.18■■□□□ 1.46
SHMT1-203ENST00000354098 ACOT2P49753 483 aa24.18■■□□□ 1.46
SHMT1-203ENST00000354098 HACE1Q8IYU2 909 aa24.18■■□□□ 1.46
SHMT1-203ENST00000354098 SAAL1Q96ER3 474 aa24.18■■□□□ 1.46
SHMT1-203ENST00000354098 ZFP42Q96MM3 310 aa24.18■■□□□ 1.46
SHMT1-203ENST00000354098 GAD1Q99259 594 aa24.18■■□□□ 1.46
SHMT1-203ENST00000354098 SEMA6BQ9H3T3 888 aa24.18■■□□□ 1.46
SHMT1-203ENST00000354098 TYW1Q9NV66 732 aaKnown RBP24.18■■□□□ 1.46
SHMT1-203ENST00000354098 INPP5FQ9Y2H2 1132 aa24.18■■□□□ 1.46
SHMT1-203ENST00000354098 YBX2Q9Y2T7 364 aaKnown RBP24.18■■□□□ 1.46
SHMT1-203ENST00000354098 INSL6Q9Y581 213 aa24.18■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms