RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 CENPUQ71F23 418 aa15.87■□□□□ 0.13
COL17A1-201ENST00000353479 CACNA2D3Q8IZS8 1091 aa15.87■□□□□ 0.13
COL17A1-201ENST00000353479 TBRG4Q969Z0 631 aaKnown RBP eCLIP15.87■□□□□ 0.13
COL17A1-201ENST00000353479 EDEM3Q9BZQ6 932 aa15.87■□□□□ 0.13
COL17A1-201ENST00000353479 KLC2Q9H0B6 622 aa15.87■□□□□ 0.13
COL17A1-201ENST00000353479 EXOC1LA0A1B0GW35 172 aa15.86■□□□□ 0.13
COL17A1-201ENST00000353479 ITGA4P13612 1032 aa15.86■□□□□ 0.13
COL17A1-201ENST00000353479 KCNJ6P48051 423 aa15.86■□□□□ 0.13
COL17A1-201ENST00000353479 PTPAQ15257 358 aa15.86■□□□□ 0.13
COL17A1-201ENST00000353479 CDR2LQ86X02 465 aaPredicted RBP15.86■□□□□ 0.13
COL17A1-201ENST00000353479 ARHGAP24Q8N264 748 aa15.86■□□□□ 0.13
COL17A1-201ENST00000353479 CALR3Q96L12 384 aaKnown RBP15.86■□□□□ 0.13
COL17A1-201ENST00000353479 IDI2Q9BXS1 227 aa15.86■□□□□ 0.13
COL17A1-201ENST00000353479 DONSONQ9NYP3 566 aa15.86■□□□□ 0.13
COL17A1-201ENST00000353479 TACC3Q9Y6A5 838 aa15.86■□□□□ 0.13
COL17A1-201ENST00000353479 TRAPPC3O43617 180 aa15.86■□□□□ 0.13
COL17A1-201ENST00000353479 CYP11B2P19099 503 aa15.86■□□□□ 0.13
COL17A1-201ENST00000353479 FAM117BQ6P1L5 589 aa15.86■□□□□ 0.13
COL17A1-201ENST00000353479 RNF10Q8N5U6 811 aaKnown RBP15.86■□□□□ 0.13
COL17A1-201ENST00000353479 TTC13Q8NBP0 860 aa15.86■□□□□ 0.13
COL17A1-201ENST00000353479 PIDD1Q9HB75 910 aa15.86■□□□□ 0.13
COL17A1-201ENST00000353479 PXMP2Q9NR77 195 aa15.86■□□□□ 0.13
COL17A1-201ENST00000353479 TADA2AO75478 443 aa15.86■□□□□ 0.13
COL17A1-201ENST00000353479 SGSM1Q2NKQ1 1148 aa15.86■□□□□ 0.13
COL17A1-201ENST00000353479 BTBD8Q5XKL5 378 aa15.86■□□□□ 0.13
COL17A1-201ENST00000353479 TTC1Q99614 292 aa15.86■□□□□ 0.13
COL17A1-201ENST00000353479 STK33Q9BYT3 514 aa15.86■□□□□ 0.13
COL17A1-201ENST00000353479 EFCC1Q9HA90 598 aa15.86■□□□□ 0.13
COL17A1-201ENST00000353479 PARVAQ9NVD7 372 aa15.86■□□□□ 0.13
COL17A1-201ENST00000353479 ANO9A1A5B4 782 aa15.86■□□□□ 0.13
COL17A1-201ENST00000353479 DPYSL4O14531 572 aa15.86■□□□□ 0.13
COL17A1-201ENST00000353479 GRIK1P39086 918 aa15.86■□□□□ 0.13
COL17A1-201ENST00000353479 TOB1P50616 345 aaPredicted RBP15.86■□□□□ 0.13
COL17A1-201ENST00000353479 RNF180Q86T96 592 aa15.86■□□□□ 0.13
COL17A1-201ENST00000353479 KCTD17Q8N5Z5 321 aa15.86■□□□□ 0.13
COL17A1-201ENST00000353479 DEPDC1BQ8WUY9 529 aa15.86■□□□□ 0.13
COL17A1-201ENST00000353479 KIAA1683Q9H0B3 1180 aa15.86■□□□□ 0.13
COL17A1-201ENST00000353479 SIK2Q9H0K1 926 aa15.86■□□□□ 0.13
COL17A1-201ENST00000353479 DHX35Q9H5Z1 703 aaKnown RBP15.86■□□□□ 0.13
COL17A1-201ENST00000353479 USP27XA6NNY8 438 aa15.85■□□□□ 0.13
COL17A1-201ENST00000353479 MT-ND3P03897 115 aa15.85■□□□□ 0.13
COL17A1-201ENST00000353479 KRT7P08729 469 aa15.85■□□□□ 0.13
COL17A1-201ENST00000353479 PDGFRBP09619 1106 aa15.85■□□□□ 0.13
COL17A1-201ENST00000353479 UCHL3P15374 230 aa15.85■□□□□ 0.13
COL17A1-201ENST00000353479 IL9RQ01113 521 aa15.85■□□□□ 0.13
COL17A1-201ENST00000353479 CACNB2Q08289 660 aaPredicted RBP15.85■□□□□ 0.13
COL17A1-201ENST00000353479 MYLK4Q86YV6 388 aaPredicted RBP15.85■□□□□ 0.13
COL17A1-201ENST00000353479 SPATA2LQ8IUW3 424 aaPredicted RBP15.85■□□□□ 0.13
COL17A1-201ENST00000353479 RFFLQ8WZ73 363 aa15.85■□□□□ 0.13
COL17A1-201ENST00000353479 DDX23Q9BUQ8 820 aaKnown RBP15.85■□□□□ 0.13
COL17A1-201ENST00000353479 TLK1Q9UKI8 766 aa15.85■□□□□ 0.13
COL17A1-201ENST00000353479 ACSL3O95573 720 aa15.85■□□□□ 0.13
COL17A1-201ENST00000353479 ARHGAP25P42331 645 aa15.85■□□□□ 0.13
COL17A1-201ENST00000353479 NTRK3Q16288 839 aa15.85■□□□□ 0.13
COL17A1-201ENST00000353479 GRIK5Q16478 980 aa15.85■□□□□ 0.13
COL17A1-201ENST00000353479 EFHC2Q5JST6 749 aa15.85■□□□□ 0.13
COL17A1-201ENST00000353479 RNF219Q5W0B1 726 aaPredicted RBP15.85■□□□□ 0.13
COL17A1-201ENST00000353479 SLC30A5Q8TAD4 765 aa15.85■□□□□ 0.13
COL17A1-201ENST00000353479 GANCQ8TET4 914 aa15.85■□□□□ 0.13
COL17A1-201ENST00000353479 GPRC5CQ9NQ84 441 aa15.85■□□□□ 0.13
COL17A1-201ENST00000353479 C17orf102A2RUQ5 167 aa15.85■□□□□ 0.13
COL17A1-201ENST00000353479 PKN1Q16512 942 aa15.85■□□□□ 0.13
COL17A1-201ENST00000353479 MOXD1Q6UVY6 613 aa15.85■□□□□ 0.13
COL17A1-201ENST00000353479 PCGF5Q86SE9 256 aa15.85■□□□□ 0.13
COL17A1-201ENST00000353479 WHAMMQ8TF30 809 aa15.85■□□□□ 0.13
COL17A1-201ENST00000353479 HDAC6Q9UBN7 1215 aa15.85■□□□□ 0.13
COL17A1-201ENST00000353479 ANGPTL3Q9Y5C1 460 aa15.85■□□□□ 0.13
COL17A1-201ENST00000353479 PODXLO00592 558 aa15.85■□□□□ 0.13
COL17A1-201ENST00000353479 NPTXRO95502 500 aa15.85■□□□□ 0.13
COL17A1-201ENST00000353479 COG7P83436 770 aa15.85■□□□□ 0.13
COL17A1-201ENST00000353479 SYTL5Q8TDW5 730 aaPredicted RBP15.85■□□□□ 0.13
COL17A1-201ENST00000353479 FBXO41Q8TF61 875 aa15.85■□□□□ 0.13
COL17A1-201ENST00000353479 CPA5Q8WXQ8 436 aa15.85■□□□□ 0.13
COL17A1-201ENST00000353479 FAM163AQ96GL9 167 aaPredicted RBP15.85■□□□□ 0.13
COL17A1-201ENST00000353479 GLT1D1Q96MS3 346 aa15.85■□□□□ 0.13
COL17A1-201ENST00000353479 SPATC1LQ9H0A9 340 aa15.85■□□□□ 0.13
COL17A1-201ENST00000353479 AGPAT5Q9NUQ2 364 aa15.85■□□□□ 0.13
COL17A1-201ENST00000353479 CCDC160A6NGH7 325 aa15.85■□□□□ 0.13
COL17A1-201ENST00000353479 RSPH10B2B2RC85 870 aa15.85■□□□□ 0.13
COL17A1-201ENST00000353479 RSPH10BP0C881 870 aa15.85■□□□□ 0.13
COL17A1-201ENST00000353479 TM4SF1P30408 202 aa15.85■□□□□ 0.13
COL17A1-201ENST00000353479 DSG3P32926 999 aa15.85■□□□□ 0.13
COL17A1-201ENST00000353479 FKBP1AP62942 108 aaKnown RBP15.85■□□□□ 0.13
COL17A1-201ENST00000353479 RHOT1Q8IXI2 618 aa15.85■□□□□ 0.13
COL17A1-201ENST00000353479 OSBPL9Q96SU4 736 aa15.85■□□□□ 0.13
COL17A1-201ENST00000353479 MKRN1Q9UHC7 482 aaKnown RBP15.85■□□□□ 0.13
COL17A1-201ENST00000353479 F5H423 210 aaPredicted RBP15.84■□□□□ 0.13
COL17A1-201ENST00000353479 PDHXO00330 501 aa15.84■□□□□ 0.13
COL17A1-201ENST00000353479 EXTL3O43909 919 aa15.84■□□□□ 0.13
COL17A1-201ENST00000353479 RTN2O75298 545 aa15.84■□□□□ 0.13
COL17A1-201ENST00000353479 SLC9A1P19634 815 aa15.84■□□□□ 0.13
COL17A1-201ENST00000353479 RGS7P49802 495 aa15.84■□□□□ 0.13
COL17A1-201ENST00000353479 HERVK_113P62684 666 aa15.84■□□□□ 0.13
COL17A1-201ENST00000353479 CUL1Q13616 776 aa15.84■□□□□ 0.13
COL17A1-201ENST00000353479 TBX20Q9UMR3 447 aa15.84■□□□□ 0.13
COL17A1-201ENST00000353479 IL18RAPO95256 599 aa15.84■□□□□ 0.13
COL17A1-201ENST00000353479 HLA-DRAP01903 254 aa15.84■□□□□ 0.13
COL17A1-201ENST00000353479 SCP2P22307 547 aa15.84■□□□□ 0.13
COL17A1-201ENST00000353479 VEPH1Q14D04 833 aa15.84■□□□□ 0.13
COL17A1-201ENST00000353479 TTC31Q49AM3 519 aaPredicted RBP15.84■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms