RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 MIF4GDA9UHW6 222 aaKnown RBP23.46■■□□□ 1.35
SHMT1-202ENST00000352886 NFKBIEO00221 500 aa23.46■■□□□ 1.35
SHMT1-202ENST00000352886 GMPSP49915 693 aaPredicted RBP23.46■■□□□ 1.35
SHMT1-202ENST00000352886 DR1Q01658 176 aa23.46■■□□□ 1.35
SHMT1-202ENST00000352886 SP4Q02446 784 aa23.46■■□□□ 1.35
SHMT1-202ENST00000352886 MESDQ14696 234 aa23.46■■□□□ 1.35
SHMT1-202ENST00000352886 KDM7AQ6ZMT4 941 aa23.46■■□□□ 1.35
SHMT1-202ENST00000352886 C1orf131Q8NDD1 294 aaKnown RBP23.46■■□□□ 1.35
SHMT1-202ENST00000352886 OR2W6PQ8NHA6 318 aa23.46■■□□□ 1.35
SHMT1-202ENST00000352886 HELQQ8TDG4 1101 aa23.46■■□□□ 1.35
SHMT1-202ENST00000352886 BCAS4Q8TDM0 211 aa23.46■■□□□ 1.35
SHMT1-202ENST00000352886 TAS1R2Q8TE23 839 aa23.46■■□□□ 1.35
SHMT1-202ENST00000352886 SLC16A10Q8TF71 515 aa23.46■■□□□ 1.35
SHMT1-202ENST00000352886 SPIRE2Q8WWL2 714 aa23.46■■□□□ 1.35
SHMT1-202ENST00000352886 ATP6V0A1Q93050 837 aa23.46■■□□□ 1.35
SHMT1-202ENST00000352886 COQ4Q9Y3A0 265 aa23.46■■□□□ 1.35
SHMT1-202ENST00000352886 TELO2Q9Y4R8 837 aa23.46■■□□□ 1.35
SHMT1-202ENST00000352886 ADGRA3Q8IWK6 1321 aa23.46■■□□□ 1.35
SHMT1-202ENST00000352886 SYNGAP1Q96PV0 1343 aa23.46■■□□□ 1.35
SHMT1-202ENST00000352886 GOLGA6L10A6NI86 522 aa23.45■■□□□ 1.35
SHMT1-202ENST00000352886 H0YGN5 161 aa23.45■■□□□ 1.35
SHMT1-202ENST00000352886 RGS20O76081 388 aa23.45■■□□□ 1.35
SHMT1-202ENST00000352886 GZMAP12544 262 aa23.45■■□□□ 1.35
SHMT1-202ENST00000352886 KCNA2P16389 499 aa23.45■■□□□ 1.35
SHMT1-202ENST00000352886 NR1D1P20393 614 aa23.45■■□□□ 1.35
SHMT1-202ENST00000352886 MARCKSL1P49006 195 aa23.45■■□□□ 1.35
SHMT1-202ENST00000352886 FMO1Q01740 532 aa23.45■■□□□ 1.35
SHMT1-202ENST00000352886 SWSAP1Q6NVH7 229 aa23.45■■□□□ 1.35
SHMT1-202ENST00000352886 POTEAQ6S8J7 498 aa23.45■■□□□ 1.35
SHMT1-202ENST00000352886 UBL4BQ8N7F7 174 aa23.45■■□□□ 1.35
SHMT1-202ENST00000352886 ZNF280CQ8ND82 737 aa23.45■■□□□ 1.35
SHMT1-202ENST00000352886 REPS2Q8NFH8 660 aa23.45■■□□□ 1.35
SHMT1-202ENST00000352886 IPO4Q8TEX9 1081 aaKnown RBP23.45■■□□□ 1.35
SHMT1-202ENST00000352886 UBLCP1Q8WVY7 318 aaPredicted RBP23.45■■□□□ 1.35
SHMT1-202ENST00000352886 RAB17Q9H0T7 212 aa23.45■■□□□ 1.35
SHMT1-202ENST00000352886 C17orf75Q9HAS0 396 aa23.45■■□□□ 1.35
SHMT1-202ENST00000352886 NFS1Q9Y697 457 aa23.45■■□□□ 1.35
SHMT1-202ENST00000352886 HMGB1P1B2RPK0 211 aaPredicted RBP23.45■■□□□ 1.34
SHMT1-202ENST00000352886 MAFGO15525 162 aa23.45■■□□□ 1.34
SHMT1-202ENST00000352886 COMTP21964 271 aa23.45■■□□□ 1.34
SHMT1-202ENST00000352886 GPC3P51654 580 aa23.45■■□□□ 1.34
SHMT1-202ENST00000352886 TGFB2P61812 414 aa23.45■■□□□ 1.34
SHMT1-202ENST00000352886 PPP2R5EQ16537 467 aa23.45■■□□□ 1.34
SHMT1-202ENST00000352886 FBXL13Q8NEE6 735 aa23.45■■□□□ 1.34
SHMT1-202ENST00000352886 ELMO3Q96BJ8 720 aa23.45■■□□□ 1.34
SHMT1-202ENST00000352886 NT5C1BQ96P26 610 aa23.45■■□□□ 1.34
SHMT1-202ENST00000352886 ZSWIM1Q9BR11 485 aa23.45■■□□□ 1.34
SHMT1-202ENST00000352886 TMBIM4Q9HC24 238 aa23.45■■□□□ 1.34
SHMT1-202ENST00000352886 FZD1Q9UP38 647 aa23.45■■□□□ 1.34
SHMT1-202ENST00000352886 UTRNP46939 3433 aa23.45■■□□□ 1.34
SHMT1-202ENST00000352886 A6NNZ2 444 aa23.44■■□□□ 1.34
SHMT1-202ENST00000352886 STBD1O95210 358 aa23.44■■□□□ 1.34
SHMT1-202ENST00000352886 CYP11B1P15538 503 aa23.44■■□□□ 1.34
SHMT1-202ENST00000352886 HMGCS2P54868 508 aa23.44■■□□□ 1.34
SHMT1-202ENST00000352886 CLUL1Q15846 466 aa23.44■■□□□ 1.34
SHMT1-202ENST00000352886 TUBB8Q3ZCM7 444 aa23.44■■□□□ 1.34
SHMT1-202ENST00000352886 DCAF15Q66K64 600 aa23.44■■□□□ 1.34
SHMT1-202ENST00000352886 TMC3Q7Z5M5 1100 aa23.44■■□□□ 1.34
SHMT1-202ENST00000352886 NSUN6Q8TEA1 469 aaKnown RBP23.44■■□□□ 1.34
SHMT1-202ENST00000352886 MFSD14AQ96MC6 490 aa23.44■■□□□ 1.34
SHMT1-202ENST00000352886 FBXL18Q96ME1 805 aa23.44■■□□□ 1.34
SHMT1-202ENST00000352886 WRNIP1Q96S55 665 aa23.44■■□□□ 1.34
SHMT1-202ENST00000352886 CENPHQ9H3R5 247 aa23.44■■□□□ 1.34
SHMT1-202ENST00000352886 AS3MTQ9HBK9 375 aa23.44■■□□□ 1.34
SHMT1-202ENST00000352886 RAB20Q9NX57 234 aa23.44■■□□□ 1.34
SHMT1-202ENST00000352886 RGS17Q9UGC6 210 aaPredicted RBP23.44■■□□□ 1.34
SHMT1-202ENST00000352886 ZNF214Q9UL59 606 aaPredicted RBP23.44■■□□□ 1.34
SHMT1-202ENST00000352886 HNRNPDLO14979 420 aaKnown RBP23.44■■□□□ 1.34
SHMT1-202ENST00000352886 DLATP10515 647 aaKnown RBP23.44■■□□□ 1.34
SHMT1-202ENST00000352886 PTPRAP18433 802 aa23.44■■□□□ 1.34
SHMT1-202ENST00000352886 TMC2Q8TDI7 906 aa23.44■■□□□ 1.34
SHMT1-202ENST00000352886 GLG1Q92896 1179 aa23.44■■□□□ 1.34
SHMT1-202ENST00000352886 SEPT9Q9UHD8 586 aaPredicted RBP23.44■■□□□ 1.34
SHMT1-202ENST00000352886 CNOT7Q9UIV1 285 aaKnown RBP23.44■■□□□ 1.34
SHMT1-202ENST00000352886 GJA3Q9Y6H8 435 aa23.44■■□□□ 1.34
SHMT1-202ENST00000352886 MYH9P35579 1960 aaKnown RBP23.44■■□□□ 1.34
SHMT1-202ENST00000352886 MYZAPP0CAP1 466 aa23.43■■□□□ 1.34
SHMT1-202ENST00000352886 CCT5P48643 541 aa23.43■■□□□ 1.34
SHMT1-202ENST00000352886 PDE6CP51160 858 aa23.43■■□□□ 1.34
SHMT1-202ENST00000352886 CYP24A1Q07973 514 aa23.43■■□□□ 1.34
SHMT1-202ENST00000352886 MTMR3Q13615 1198 aa23.43■■□□□ 1.34
SHMT1-202ENST00000352886 ATP8B4Q8TF62 1192 aa23.43■■□□□ 1.34
SHMT1-202ENST00000352886 RPS6KC1Q96S38 1066 aa23.43■■□□□ 1.34
SHMT1-202ENST00000352886 JPH1Q9HDC5 661 aaPredicted RBP23.43■■□□□ 1.34
SHMT1-202ENST00000352886 PICK1Q9NRD5 415 aa23.43■■□□□ 1.34
SHMT1-202ENST00000352886 SORBS3O60504 671 aa23.43■■□□□ 1.34
SHMT1-202ENST00000352886 PSAPP07602 524 aa23.43■■□□□ 1.34
SHMT1-202ENST00000352886 ZNF844Q08AG5 666 aa23.43■■□□□ 1.34
SHMT1-202ENST00000352886 PRAMEF18Q5VWM3 479 aa23.43■■□□□ 1.34
SHMT1-202ENST00000352886 SV2AQ7L0J3 742 aa23.43■■□□□ 1.34
SHMT1-202ENST00000352886 USP37Q86T82 979 aa23.43■■□□□ 1.34
SHMT1-202ENST00000352886 TRPC6Q9Y210 931 aa23.43■■□□□ 1.34
SHMT1-202ENST00000352886 TRIM66O15016 1216 aa23.42■■□□□ 1.34
SHMT1-202ENST00000352886 DKC1O60832 514 aaKnown RBP eCLIP23.42■■□□□ 1.34
SHMT1-202ENST00000352886 DGAT1O75907 488 aa23.42■■□□□ 1.34
SHMT1-202ENST00000352886 MTA2O94776 668 aa23.42■■□□□ 1.34
SHMT1-202ENST00000352886 DSG3P32926 999 aa23.42■■□□□ 1.34
SHMT1-202ENST00000352886 CDR2Q01850 454 aa23.42■■□□□ 1.34
SHMT1-202ENST00000352886 CCDC60Q8IWA6 550 aaPredicted RBP23.42■■□□□ 1.34
SHMT1-202ENST00000352886 ZNF564Q8TBZ8 553 aaPredicted RBP23.42■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms