RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 TYW1Q9NV66 732 aaKnown RBP10.04□□□□□ -0.8
USP4-202ENST00000351842 THSD7BQ9C0I4 1608 aa10.04□□□□□ -0.8
USP4-202ENST00000351842 SFPQP23246 707 aaKnown RBP eCLIP10.04□□□□□ -0.8
USP4-202ENST00000351842 ITGB8P26012 769 aa10.04□□□□□ -0.8
USP4-202ENST00000351842 FANCCQ00597 558 aa10.04□□□□□ -0.8
USP4-202ENST00000351842 UBXN1Q04323 297 aa10.04□□□□□ -0.8
USP4-202ENST00000351842 FAAP100Q0VG06 881 aa10.04□□□□□ -0.8
USP4-202ENST00000351842 LRRC8DQ7L1W4 858 aa10.04□□□□□ -0.8
USP4-202ENST00000351842 FAM126BQ8IXS8 530 aa10.04□□□□□ -0.8
USP4-202ENST00000351842 FNBP1Q96RU3 617 aa10.04□□□□□ -0.8
USP4-202ENST00000351842 PRDM10Q9NQV6 1147 aa10.04□□□□□ -0.8
USP4-202ENST00000351842 FAM207AQ9NSI2 230 aaPredicted RBP10.04□□□□□ -0.8
USP4-202ENST00000351842 ARMCX3Q9UH62 379 aaPredicted RBP10.04□□□□□ -0.8
USP4-202ENST00000351842 TRPV2Q9Y5S1 764 aa10.04□□□□□ -0.8
USP4-202ENST00000351842 MBLAC1A4D2B0 266 aaPredicted RBP10.03□□□□□ -0.8
USP4-202ENST00000351842 TLR3O15455 904 aaKnown RBP10.03□□□□□ -0.8
USP4-202ENST00000351842 TSPAN1O60635 241 aa10.03□□□□□ -0.8
USP4-202ENST00000351842 ADRB2P07550 413 aa10.03□□□□□ -0.8
USP4-202ENST00000351842 EPB41P11171 864 aaKnown RBP10.03□□□□□ -0.8
USP4-202ENST00000351842 WNT7BP56706 349 aa10.03□□□□□ -0.8
USP4-202ENST00000351842 GTF2BQ00403 316 aa10.03□□□□□ -0.8
USP4-202ENST00000351842 ARID5AQ03989 594 aa10.03□□□□□ -0.8
USP4-202ENST00000351842 MBTPS1Q14703 1052 aa10.03□□□□□ -0.8
USP4-202ENST00000351842 KRT31Q15323 416 aa10.03□□□□□ -0.8
USP4-202ENST00000351842 SNRNP35Q16560 246 aaKnown RBP10.03□□□□□ -0.8
USP4-202ENST00000351842 SCARA3Q6AZY7 606 aa10.03□□□□□ -0.8
USP4-202ENST00000351842 ANKRD20A12PQ8NF67 263 aa10.03□□□□□ -0.8
USP4-202ENST00000351842 ZNF507Q8TCN5 953 aa10.03□□□□□ -0.8
USP4-202ENST00000351842 HASPINQ8TF76 798 aa10.03□□□□□ -0.8
USP4-202ENST00000351842 TUBGCP2Q9BSJ2 902 aa10.03□□□□□ -0.8
USP4-202ENST00000351842 ADAMTS10Q9H324 1103 aa10.03□□□□□ -0.8
USP4-202ENST00000351842 TMEM206Q9H813 350 aa10.03□□□□□ -0.8
USP4-202ENST00000351842 RPL13P26373 211 aaKnown RBP10.03□□□□□ -0.8
USP4-202ENST00000351842 PBX3P40426 434 aa10.03□□□□□ -0.8
USP4-202ENST00000351842 EFNA5P52803 228 aa10.03□□□□□ -0.8
USP4-202ENST00000351842 ADAM17P78536 824 aa10.03□□□□□ -0.8
USP4-202ENST00000351842 CENPPQ6IPU0 288 aa10.03□□□□□ -0.8
USP4-202ENST00000351842 MAP4K3Q8IVH8 894 aa10.03□□□□□ -0.8
USP4-202ENST00000351842 XXYLT1Q8NBI6 393 aa10.03□□□□□ -0.8
USP4-202ENST00000351842 PI4K2AQ9BTU6 479 aa10.03□□□□□ -0.8
USP4-202ENST00000351842 GOLGA2P5Q9HBQ8 144 aa10.03□□□□□ -0.8
USP4-202ENST00000351842 RBAKQ9NYW8 714 aaPredicted RBP10.03□□□□□ -0.8
USP4-202ENST00000351842 UTP18Q9Y5J1 556 aaKnown RBP eCLIP10.03□□□□□ -0.8
USP4-202ENST00000351842 LOXHD1Q8IVV2 1947 aa10.03□□□□□ -0.8
USP4-202ENST00000351842 ACKR2O00590 384 aa10.03□□□□□ -0.8
USP4-202ENST00000351842 EVI5O60447 810 aa10.03□□□□□ -0.8
USP4-202ENST00000351842 PHACTR2O75167 634 aa10.03□□□□□ -0.8
USP4-202ENST00000351842 POMCP01189 267 aa10.03□□□□□ -0.8
USP4-202ENST00000351842 KRT13P13646 458 aa10.03□□□□□ -0.8
USP4-202ENST00000351842 USP8P40818 1118 aa10.03□□□□□ -0.8
USP4-202ENST00000351842 LPIN1Q14693 890 aa10.03□□□□□ -0.8
USP4-202ENST00000351842 NOLC1Q14978 699 aaKnown RBP eCLIP10.03□□□□□ -0.8
USP4-202ENST00000351842 C2orf40Q9H1Z8 148 aa10.03□□□□□ -0.8
USP4-202ENST00000351842 CDT1Q9H211 546 aa10.03□□□□□ -0.8
USP4-202ENST00000351842 TNRC18O15417 2968 aaPredicted RBP10.02□□□□□ -0.8
USP4-202ENST00000351842 COL1A2P08123 1366 aa10.02□□□□□ -0.8
USP4-202ENST00000351842 ERCC5P28715 1186 aaPredicted RBP10.02□□□□□ -0.81
USP4-202ENST00000351842 GATMP50440 423 aa10.02□□□□□ -0.81
USP4-202ENST00000351842 EPM2AIP1Q7L775 607 aaPredicted RBP10.02□□□□□ -0.81
USP4-202ENST00000351842 DPH6Q7L8W6 267 aa10.02□□□□□ -0.81
USP4-202ENST00000351842 TMC6Q7Z403 805 aa10.02□□□□□ -0.81
USP4-202ENST00000351842 EXOC8Q8IYI6 725 aa10.02□□□□□ -0.81
USP4-202ENST00000351842 ENOX1Q8TC92 643 aaKnown RBP10.02□□□□□ -0.81
USP4-202ENST00000351842 SPIRE2Q8WWL2 714 aa10.02□□□□□ -0.81
USP4-202ENST00000351842 ZNF830Q96NB3 372 aaPredicted RBP10.02□□□□□ -0.81
USP4-202ENST00000351842 ACO2Q99798 780 aaKnown RBP10.02□□□□□ -0.81
USP4-202ENST00000351842 TSEN34Q9BSV6 310 aaKnown RBP10.02□□□□□ -0.81
USP4-202ENST00000351842 PRMT7Q9NVM4 692 aaPredicted RBP10.02□□□□□ -0.81
USP4-202ENST00000351842 ASAP2O43150 1006 aa10.02□□□□□ -0.81
USP4-202ENST00000351842 GAS2O43903 313 aaKnown RBP10.02□□□□□ -0.81
USP4-202ENST00000351842 MGEA5O60502 916 aa10.02□□□□□ -0.81
USP4-202ENST00000351842 TOM1L1O75674 476 aa10.02□□□□□ -0.81
USP4-202ENST00000351842 FGFR1P11362 822 aa10.02□□□□□ -0.81
USP4-202ENST00000351842 TCP11X2Q5H9J9 407 aa10.02□□□□□ -0.81
USP4-202ENST00000351842 IRF2BP1Q8IU81 584 aa10.02□□□□□ -0.81
USP4-202ENST00000351842 HSD3B7Q9H2F3 369 aa10.02□□□□□ -0.81
USP4-202ENST00000351842 C17orf75Q9HAS0 396 aa10.02□□□□□ -0.81
USP4-202ENST00000351842 NLRC4Q9NPP4 1024 aa10.02□□□□□ -0.81
USP4-202ENST00000351842 HCSTQ9UBK5 93 aa10.02□□□□□ -0.81
USP4-202ENST00000351842 MTUS1Q9ULD2 1270 aa10.02□□□□□ -0.81
USP4-202ENST00000351842 PDXKO00764 312 aa10.01□□□□□ -0.81
USP4-202ENST00000351842 SLC26A4O43511 780 aa10.01□□□□□ -0.81
USP4-202ENST00000351842 CLTBP09497 229 aa10.01□□□□□ -0.81
USP4-202ENST00000351842 STAG3L1P0CL83 205 aa10.01□□□□□ -0.81
USP4-202ENST00000351842 ACTN1P12814 892 aa10.01□□□□□ -0.81
USP4-202ENST00000351842 CRYBB1P53674 252 aaPredicted RBP10.01□□□□□ -0.81
USP4-202ENST00000351842 SCARA5Q6ZMJ2 495 aa10.01□□□□□ -0.81
USP4-202ENST00000351842 LRRC55Q6ZSA7 311 aa10.01□□□□□ -0.81
USP4-202ENST00000351842 GAD1Q99259 594 aa10.01□□□□□ -0.81
USP4-202ENST00000351842 TIPINQ9BVW5 301 aa10.01□□□□□ -0.81
USP4-202ENST00000351842 PDZD7Q9H5P4 517 aa10.01□□□□□ -0.81
USP4-202ENST00000351842 PRDM4Q9UKN5 801 aa10.01□□□□□ -0.81
USP4-202ENST00000351842 R3HCC1Q9Y3T6 440 aaKnown RBP10.01□□□□□ -0.81
USP4-202ENST00000351842 PHLPP2Q6ZVD8 1323 aa10.01□□□□□ -0.81
USP4-202ENST00000351842 COL6A3P12111 3177 aa10.01□□□□□ -0.81
USP4-202ENST00000351842 NBNO60934 754 aa10.01□□□□□ -0.81
USP4-202ENST00000351842 PPP1R37O75864 691 aa10.01□□□□□ -0.81
USP4-202ENST00000351842 PNMA6AP0CW24 399 aaPredicted RBP10.01□□□□□ -0.81
USP4-202ENST00000351842 SELPP16109 830 aa10.01□□□□□ -0.81
USP4-202ENST00000351842 HOXA11P31270 313 aaPredicted RBP10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms