RNA–Protein interactions for RNA: ENST00000345009.8

SNCA-202, Transcript of synuclein alpha, humanhuman

TSL 1 (best) BASIC

Gene SNCA, Length 1,096 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-202ENST00000345009 LIG4P49917 911 aa12.98□□□□□ -0.33
SNCA-202ENST00000345009 DEFB103AP81534 67 aa12.98□□□□□ -0.33
SNCA-202ENST00000345009 COASYQ13057 564 aa12.98□□□□□ -0.33
SNCA-202ENST00000345009 CUL4BQ13620 913 aa12.98□□□□□ -0.33
SNCA-202ENST00000345009 KYAT1Q16773 422 aa12.98□□□□□ -0.33
SNCA-202ENST00000345009 TCTN1Q2MV58 587 aa12.98□□□□□ -0.33
SNCA-202ENST00000345009 FAM26FQ5R3K3 315 aa12.98□□□□□ -0.33
SNCA-202ENST00000345009 SLFN12LQ6IEE8 588 aa12.98□□□□□ -0.33
SNCA-202ENST00000345009 ECHDC2Q86YB7 292 aa12.98□□□□□ -0.33
SNCA-202ENST00000345009 GRAMD1CQ8IYS0 662 aa12.98□□□□□ -0.33
SNCA-202ENST00000345009 SYCP3Q8IZU3 236 aa12.98□□□□□ -0.33
SNCA-202ENST00000345009 ZNF454Q8N9F8 522 aa12.98□□□□□ -0.33
SNCA-202ENST00000345009 RNF169Q8NCN4 708 aa12.98□□□□□ -0.33
SNCA-202ENST00000345009 CPB2Q96IY4 423 aa12.98□□□□□ -0.33
SNCA-202ENST00000345009 ACCSQ96QU6 501 aa12.98□□□□□ -0.33
SNCA-202ENST00000345009 TBC1D7Q9P0N9 293 aa12.98□□□□□ -0.33
SNCA-202ENST00000345009 TTC3P53804 2025 aa12.98□□□□□ -0.33
SNCA-202ENST00000345009 CLDN3O15551 220 aa12.97□□□□□ -0.33
SNCA-202ENST00000345009 B4GALT5O43286 388 aa12.97□□□□□ -0.33
SNCA-202ENST00000345009 ITGA4P13612 1032 aa12.97□□□□□ -0.33
SNCA-202ENST00000345009 HSP90AA2PQ14568 343 aaPredicted RBP12.97□□□□□ -0.33
SNCA-202ENST00000345009 FAM117BQ6P1L5 589 aa12.97□□□□□ -0.33
SNCA-202ENST00000345009 GLB1LQ6UWU2 654 aa12.97□□□□□ -0.33
SNCA-202ENST00000345009 LINC01599Q8WXQ3 324 aa12.97□□□□□ -0.33
SNCA-202ENST00000345009 GSDMAQ96QA5 445 aa12.97□□□□□ -0.33
SNCA-202ENST00000345009 ACO2Q99798 780 aaKnown RBP12.97□□□□□ -0.33
SNCA-202ENST00000345009 TARS2Q9BW92 718 aaKnown RBP12.97□□□□□ -0.33
SNCA-202ENST00000345009 KRTAP3-3Q9BYR6 98 aa12.97□□□□□ -0.33
SNCA-202ENST00000345009 KRTAP3-2Q9BYR7 98 aa12.97□□□□□ -0.33
SNCA-202ENST00000345009 EIF3DO15371 548 aaKnown RBP eCLIP12.96□□□□□ -0.33
SNCA-202ENST00000345009 NPTXRO95502 500 aa12.96□□□□□ -0.33
SNCA-202ENST00000345009 PTMSP20962 102 aa12.96□□□□□ -0.33
SNCA-202ENST00000345009 DPYDQ12882 1025 aa12.96□□□□□ -0.33
SNCA-202ENST00000345009 KCNB1Q14721 858 aa12.96□□□□□ -0.33
SNCA-202ENST00000345009 ZNF568Q3ZCX4 644 aa12.96□□□□□ -0.33
SNCA-202ENST00000345009 KMT5BQ4FZB7 885 aa12.96□□□□□ -0.33
SNCA-202ENST00000345009 HABP4Q5JVS0 413 aaKnown RBP12.96□□□□□ -0.33
SNCA-202ENST00000345009 L1TD1Q5T7N2 865 aaKnown RBP12.96□□□□□ -0.33
SNCA-202ENST00000345009 NT5DC1Q5TFE4 455 aa12.96□□□□□ -0.33
SNCA-202ENST00000345009 MPZL3Q6UWV2 235 aa12.96□□□□□ -0.33
SNCA-202ENST00000345009 MRPL10Q7Z7H8 261 aaKnown RBP12.96□□□□□ -0.33
SNCA-202ENST00000345009 MAP4K3Q8IVH8 894 aa12.96□□□□□ -0.33
SNCA-202ENST00000345009 SMARCE1Q969G3 411 aa12.96□□□□□ -0.33
SNCA-202ENST00000345009 PDZD7Q9H5P4 517 aa12.96□□□□□ -0.33
SNCA-202ENST00000345009 SLC28A3Q9HAS3 691 aa12.96□□□□□ -0.33
SNCA-202ENST00000345009 LMBRD1Q9NUN5 540 aa12.96□□□□□ -0.33
SNCA-202ENST00000345009 KANSL3Q9P2N6 904 aa12.96□□□□□ -0.33
SNCA-202ENST00000345009 MICAL3Q7RTP6 2002 aa12.96□□□□□ -0.34
SNCA-202ENST00000345009 UBE4BO95155 1302 aa12.95□□□□□ -0.34
SNCA-202ENST00000345009 CARNS1A5YM72 827 aa12.95□□□□□ -0.34
SNCA-202ENST00000345009 DGKIO75912 1065 aa12.95□□□□□ -0.34
SNCA-202ENST00000345009 MBD3O95983 291 aa12.95□□□□□ -0.34
SNCA-202ENST00000345009 PIGRP01833 764 aa12.95□□□□□ -0.34
SNCA-202ENST00000345009 MCF2P10911 925 aa12.95□□□□□ -0.34
SNCA-202ENST00000345009 CASP1P29466 404 aa12.95□□□□□ -0.34
SNCA-202ENST00000345009 YARSP54577 528 aaKnown RBP12.95□□□□□ -0.34
SNCA-202ENST00000345009 SNRPFP62306 86 aaKnown RBP12.95□□□□□ -0.34
SNCA-202ENST00000345009 HTRA4P83105 476 aaPredicted RBP12.95□□□□□ -0.34
SNCA-202ENST00000345009 BTG3Q14201 252 aaPredicted RBP12.95□□□□□ -0.34
SNCA-202ENST00000345009 ZC2HC1CQ53FD0 456 aaPredicted RBP12.95□□□□□ -0.34
SNCA-202ENST00000345009 HS2ST1Q7LGA3 356 aa12.95□□□□□ -0.34
SNCA-202ENST00000345009 TAS1R3Q7RTX0 852 aa12.95□□□□□ -0.34
SNCA-202ENST00000345009 CMTR2Q8IYT2 770 aaKnown RBP12.95□□□□□ -0.34
SNCA-202ENST00000345009 URGCPQ8TCY9 931 aa12.95□□□□□ -0.34
SNCA-202ENST00000345009 FIZ1Q96SL8 496 aa12.95□□□□□ -0.34
SNCA-202ENST00000345009 CCDC94Q9BW85 323 aaPredicted RBP12.95□□□□□ -0.34
SNCA-202ENST00000345009 MRPL9Q9BYD2 267 aaKnown RBP12.95□□□□□ -0.34
SNCA-202ENST00000345009 TMEM117Q9H0C3 514 aa12.95□□□□□ -0.34
SNCA-202ENST00000345009 TOPORSQ9NS56 1045 aaPredicted RBP12.95□□□□□ -0.34
SNCA-202ENST00000345009 ANKFY1Q9P2R3 1169 aa12.95□□□□□ -0.34
SNCA-202ENST00000345009 GIT1Q9Y2X7 761 aa12.95□□□□□ -0.34
SNCA-202ENST00000345009 IPPQ9Y573 584 aa12.95□□□□□ -0.34
SNCA-202ENST00000345009 LAMA3Q16787 3333 aa12.94□□□□□ -0.34
SNCA-202ENST00000345009 TMEM265A0A087WTH1 108 aa12.94□□□□□ -0.34
SNCA-202ENST00000345009 GRXCR1A8MXD5 290 aa12.94□□□□□ -0.34
SNCA-202ENST00000345009 KIAA0391O15091 583 aaKnown RBP12.94□□□□□ -0.34
SNCA-202ENST00000345009 KLRC4O43908 158 aa12.94□□□□□ -0.34
SNCA-202ENST00000345009 RHOBTB3O94955 611 aa12.94□□□□□ -0.34
SNCA-202ENST00000345009 DNAJB2P25686 324 aa12.94□□□□□ -0.34
SNCA-202ENST00000345009 RABGGTBP53611 331 aa12.94□□□□□ -0.34
SNCA-202ENST00000345009 EHHADHQ08426 723 aa12.94□□□□□ -0.34
SNCA-202ENST00000345009 PNOCQ13519 176 aa12.94□□□□□ -0.34
SNCA-202ENST00000345009 NOLC1Q14978 699 aaKnown RBP eCLIP12.94□□□□□ -0.34
SNCA-202ENST00000345009 UBXN11Q5T124 520 aa12.94□□□□□ -0.34
SNCA-202ENST00000345009 ZBTB33Q86T24 672 aa12.94□□□□□ -0.34
SNCA-202ENST00000345009 ZNF598Q86UK7 904 aaKnown RBP12.94□□□□□ -0.34
SNCA-202ENST00000345009 CRIPAKQ8N1N5 446 aa12.94□□□□□ -0.34
SNCA-202ENST00000345009 FIBCD1Q8N539 461 aa12.94□□□□□ -0.34
SNCA-202ENST00000345009 GOLGA5Q8TBA6 731 aa12.94□□□□□ -0.34
SNCA-202ENST00000345009 ZNF507Q8TCN5 953 aa12.94□□□□□ -0.34
SNCA-202ENST00000345009 TIFAQ96CG3 184 aa12.94□□□□□ -0.34
SNCA-202ENST00000345009 MSTO1Q9BUK6 570 aa12.94□□□□□ -0.34
SNCA-202ENST00000345009 STRA6Q9BX79 667 aa12.94□□□□□ -0.34
SNCA-202ENST00000345009 EIF2AQ9BY44 585 aaKnown RBP12.94□□□□□ -0.34
SNCA-202ENST00000345009 PBX4Q9BYU1 374 aa12.94□□□□□ -0.34
SNCA-202ENST00000345009 GBP3Q9H0R5 595 aa12.94□□□□□ -0.34
SNCA-202ENST00000345009 RSAD1Q9HA92 442 aa12.94□□□□□ -0.34
SNCA-202ENST00000345009 SLC39A2Q9NP94 309 aa12.94□□□□□ -0.34
SNCA-202ENST00000345009 AAASQ9NRG9 546 aa12.94□□□□□ -0.34
SNCA-202ENST00000345009 CGNQ9P2M7 1197 aaKnown RBP12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms