RNA–Protein interactions for RNA: ENST00000343508.7

CSMD3-203, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best) BASIC

Gene CSMD3, Length 13,018 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-203ENST00000343508 HSPA13P48723 471 aa5.08□□□□□ -1.6
CSMD3-203ENST00000343508 LACRTQ9GZZ8 138 aa5.08□□□□□ -1.6
CSMD3-203ENST00000343508 IPO11Q9UI26 975 aaKnown RBP5.08□□□□□ -1.6
CSMD3-203ENST00000343508 ORC6Q9Y5N6 252 aa5.08□□□□□ -1.6
CSMD3-203ENST00000343508 PLEKP08567 350 aaPredicted RBP5.08□□□□□ -1.6
CSMD3-203ENST00000343508 KRT7P08729 469 aa5.08□□□□□ -1.6
CSMD3-203ENST00000343508 MRPS9P82933 396 aaKnown RBP5.08□□□□□ -1.6
CSMD3-203ENST00000343508 ABCB5Q2M3G0 1257 aa5.08□□□□□ -1.6
CSMD3-203ENST00000343508 SLFN13Q68D06 897 aa5.08□□□□□ -1.6
CSMD3-203ENST00000343508 SPATA20Q8TB22 786 aa5.08□□□□□ -1.6
CSMD3-203ENST00000343508 ATP6V0A1Q93050 837 aa5.08□□□□□ -1.6
CSMD3-203ENST00000343508 TTC1Q99614 292 aa5.08□□□□□ -1.6
CSMD3-203ENST00000343508 MANSC1Q9H8J5 431 aa5.08□□□□□ -1.6
CSMD3-203ENST00000343508 ADAM22Q9P0K1 906 aa5.08□□□□□ -1.6
CSMD3-203ENST00000343508 TLK1Q9UKI8 766 aa5.08□□□□□ -1.6
CSMD3-203ENST00000343508 ALG6Q9Y672 507 aa5.08□□□□□ -1.6
CSMD3-203ENST00000343508 ARFGEF2Q9Y6D5 1785 aa5.08□□□□□ -1.6
CSMD3-203ENST00000343508 PON1P27169 355 aa5.08□□□□□ -1.6
CSMD3-203ENST00000343508 DIXDC1Q155Q3 683 aa5.08□□□□□ -1.6
CSMD3-203ENST00000343508 SESTD1Q86VW0 696 aa5.08□□□□□ -1.6
CSMD3-203ENST00000343508 NUDCD3Q8IVD9 361 aa5.08□□□□□ -1.6
CSMD3-203ENST00000343508 MREGQ8N565 214 aa5.08□□□□□ -1.6
CSMD3-203ENST00000343508 CCDC97Q96F63 343 aaPredicted RBP5.08□□□□□ -1.6
CSMD3-203ENST00000343508 SENP7Q9BQF6 1050 aa5.08□□□□□ -1.6
CSMD3-203ENST00000343508 EPB41L4AQ9HCS5 686 aaPredicted RBP5.08□□□□□ -1.6
CSMD3-203ENST00000343508 DNAJC17Q9NVM6 304 aaKnown RBP5.08□□□□□ -1.6
CSMD3-203ENST00000343508 WDR64B1ANS9 1081 aa5.08□□□□□ -1.6
CSMD3-203ENST00000343508 CAPN9O14815 690 aa5.08□□□□□ -1.6
CSMD3-203ENST00000343508 BMP3P12645 472 aa5.08□□□□□ -1.6
CSMD3-203ENST00000343508 GNA15P30679 374 aa5.08□□□□□ -1.6
CSMD3-203ENST00000343508 TTMPQ5BVD1 217 aa5.08□□□□□ -1.6
CSMD3-203ENST00000343508 SH3RF1Q7Z6J0 888 aa5.08□□□□□ -1.6
CSMD3-203ENST00000343508 FOXP4Q8IVH2 680 aaPredicted RBP5.08□□□□□ -1.6
CSMD3-203ENST00000343508 RPS6KC1Q96S38 1066 aa5.08□□□□□ -1.6
CSMD3-203ENST00000343508 TRAF3IP3Q9Y228 551 aa5.08□□□□□ -1.6
CSMD3-203ENST00000343508 RIMBP3CA6NJZ7 1639 aa5.08□□□□□ -1.6
CSMD3-203ENST00000343508 RIMBP3BA6NNM3 1639 aa5.08□□□□□ -1.6
CSMD3-203ENST00000343508 RIMBP3Q9UFD9 1639 aa5.08□□□□□ -1.6
CSMD3-203ENST00000343508 A0A087X0T9 212 aa5.08□□□□□ -1.6
CSMD3-203ENST00000343508 POTECB2RU33 542 aa5.08□□□□□ -1.6
CSMD3-203ENST00000343508 FAM228BP0C875 321 aa5.08□□□□□ -1.6
CSMD3-203ENST00000343508 ATXN2LQ8WWM7 1075 aaKnown RBP5.08□□□□□ -1.6
CSMD3-203ENST00000343508 EIF2AQ9BY44 585 aaKnown RBP5.08□□□□□ -1.6
CSMD3-203ENST00000343508 SMYD3Q9H7B4 428 aa5.08□□□□□ -1.6
CSMD3-203ENST00000343508 LOC102724428A0A0B4J2F2 783 aa5.07□□□□□ -1.6
CSMD3-203ENST00000343508 P4HA2O15460 535 aa5.07□□□□□ -1.6
CSMD3-203ENST00000343508 SIK1P57059 783 aa5.07□□□□□ -1.6
CSMD3-203ENST00000343508 GEMIN4P57678 1058 aaKnown RBP5.07□□□□□ -1.6
CSMD3-203ENST00000343508 DYNLT1P63172 113 aa5.07□□□□□ -1.6
CSMD3-203ENST00000343508 ZNF844Q08AG5 666 aa5.07□□□□□ -1.6
CSMD3-203ENST00000343508 SURF1Q15526 300 aa5.07□□□□□ -1.6
CSMD3-203ENST00000343508 C1orf54Q8WWF1 131 aa5.07□□□□□ -1.6
CSMD3-203ENST00000343508 OPTNQ96CV9 577 aa5.07□□□□□ -1.6
CSMD3-203ENST00000343508 HEMGNQ9BXL5 484 aa5.07□□□□□ -1.6
CSMD3-203ENST00000343508 ZFATQ9P243 1243 aa5.07□□□□□ -1.6
CSMD3-203ENST00000343508 PI4KBQ9UBF8 816 aa5.07□□□□□ -1.6
CSMD3-203ENST00000343508 ZBTB1Q9Y2K1 713 aa5.07□□□□□ -1.6
CSMD3-203ENST00000343508 LRCH1Q9Y2L9 728 aa5.07□□□□□ -1.6
CSMD3-203ENST00000343508 POTEB3A0JP26 581 aa5.07□□□□□ -1.6
CSMD3-203ENST00000343508 SPAG6O75602 509 aa5.07□□□□□ -1.6
CSMD3-203ENST00000343508 PRDX5P30044 214 aa5.07□□□□□ -1.6
CSMD3-203ENST00000343508 TTC39BQ5VTQ0 682 aaPredicted RBP5.07□□□□□ -1.6
CSMD3-203ENST00000343508 POTEBQ6S5H4 581 aa5.07□□□□□ -1.6
CSMD3-203ENST00000343508 POTEGQ6S5H5 508 aa5.07□□□□□ -1.6
CSMD3-203ENST00000343508 NSUN4Q96CB9 384 aaKnown RBP5.07□□□□□ -1.6
CSMD3-203ENST00000343508 FAF2Q96CS3 445 aa5.07□□□□□ -1.6
CSMD3-203ENST00000343508 NSL1Q96IY1 281 aa5.07□□□□□ -1.6
CSMD3-203ENST00000343508 MAML3Q96JK9 1138 aa5.07□□□□□ -1.6
CSMD3-203ENST00000343508 THTPAQ9BU02 230 aa5.07□□□□□ -1.6
CSMD3-203ENST00000343508 INTS2Q9H0H0 1204 aaKnown RBP5.07□□□□□ -1.6
CSMD3-203ENST00000343508 ZBED4O75132 1171 aa5.07□□□□□ -1.6
CSMD3-203ENST00000343508 HSPA4LO95757 839 aa5.07□□□□□ -1.6
CSMD3-203ENST00000343508 STX1BP61266 288 aa5.07□□□□□ -1.6
CSMD3-203ENST00000343508 ADRM1Q16186 407 aa5.07□□□□□ -1.6
CSMD3-203ENST00000343508 CCDC92Q53HC0 331 aaPredicted RBP5.07□□□□□ -1.6
CSMD3-203ENST00000343508 LRRC34Q8IZ02 419 aa5.07□□□□□ -1.6
CSMD3-203ENST00000343508 SH3GL2Q99962 352 aa5.07□□□□□ -1.6
CSMD3-203ENST00000343508 MKNK1Q9BUB5 465 aa5.07□□□□□ -1.6
CSMD3-203ENST00000343508 LMTK3Q96Q04 1460 aa5.07□□□□□ -1.6
CSMD3-203ENST00000343508 MYMKA6NI61 221 aa5.07□□□□□ -1.6
CSMD3-203ENST00000343508 GPC4O75487 556 aa5.07□□□□□ -1.6
CSMD3-203ENST00000343508 NOP14P78316 857 aaKnown RBP5.07□□□□□ -1.6
CSMD3-203ENST00000343508 SUSD4Q5VX71 490 aa5.07□□□□□ -1.6
CSMD3-203ENST00000343508 DTX3LQ8TDB6 740 aa5.07□□□□□ -1.6
CSMD3-203ENST00000343508 PGM2Q96G03 612 aa5.07□□□□□ -1.6
CSMD3-203ENST00000343508 EIF2AK1Q9BQI3 630 aaKnown RBP5.07□□□□□ -1.6
CSMD3-203ENST00000343508 XPO5Q9HAV4 1204 aaKnown RBP eCLIP5.07□□□□□ -1.6
CSMD3-203ENST00000343508 INTS13Q9NVM9 706 aa5.07□□□□□ -1.6
CSMD3-203ENST00000343508 MAD2L2Q9UI95 211 aa5.07□□□□□ -1.6
CSMD3-203ENST00000343508 TBX3O15119 743 aa5.07□□□□□ -1.6
CSMD3-203ENST00000343508 ESRRBO95718 433 aa5.07□□□□□ -1.6
CSMD3-203ENST00000343508 KRT4P19013 534 aa5.07□□□□□ -1.6
CSMD3-203ENST00000343508 ERFEQ4G0M1 354 aa5.07□□□□□ -1.6
CSMD3-203ENST00000343508 DDX42Q86XP3 938 aaKnown RBP eCLIP5.07□□□□□ -1.6
CSMD3-203ENST00000343508 RCOR2Q8IZ40 523 aa5.07□□□□□ -1.6
CSMD3-203ENST00000343508 KIF2BQ8N4N8 673 aa5.07□□□□□ -1.6
CSMD3-203ENST00000343508 SEPT9Q9UHD8 586 aaPredicted RBP5.07□□□□□ -1.6
CSMD3-203ENST00000343508 HAO1Q9UJM8 370 aa5.07□□□□□ -1.6
CSMD3-203ENST00000343508 EMSYQ7Z589 1322 aa5.07□□□□□ -1.6
CSMD3-203ENST00000343508 GTPBP10A4D1E9 387 aaKnown RBP5.07□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms