RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 FBXL18Q96ME1 805 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 JPH2Q9BR39 696 aaPredicted RBP4.5□□□□□ -1.69
MCF2-201ENST00000338585 IFT122Q9HBG6 1241 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 CEP72Q9P209 647 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 AGO2Q9UKV8 859 aaKnown RBP4.5□□□□□ -1.69
MCF2-201ENST00000338585 TFR2Q9UP52 801 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 PPP2R2CQ9Y2T4 447 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 COL1A2P08123 1366 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 HTTP42858 3142 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 HAS3O00219 553 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 MAGEB2O15479 319 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 DUSP11O75319 330 aaKnown RBP4.5□□□□□ -1.69
MCF2-201ENST00000338585 ABL1P00519 1130 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 DLATP10515 647 aaKnown RBP4.5□□□□□ -1.69
MCF2-201ENST00000338585 UCHL3P15374 230 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 FGFR4P22455 802 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 MATR3P43243 847 aaKnown RBP eCLIP4.5□□□□□ -1.69
MCF2-201ENST00000338585 CPT1AP50416 773 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 EFNA5P52803 228 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 PTENP60484 403 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 PURAQ00577 322 aaKnown RBP4.5□□□□□ -1.69
MCF2-201ENST00000338585 MAP2K1Q02750 393 aaPredicted RBP4.5□□□□□ -1.69
MCF2-201ENST00000338585 ARID5AQ03989 594 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 CYP24A1Q07973 514 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 RAPGEF1Q13905 1077 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 TFDP1Q14186 410 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 KIF22Q14807 665 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 ENOX2Q16206 610 aaKnown RBP4.5□□□□□ -1.69
MCF2-201ENST00000338585 MAPK6Q16659 721 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 KIZQ2M2Z5 673 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 GNASQ5JWF2 1037 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 SCARA3Q6AZY7 606 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 IQCEQ6IPM2 695 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 NFRKBQ6P4R8 1299 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 CXCL17Q6UXB2 119 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 CYP26C1Q6V0L0 522 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 TMTC1Q8IUR5 882 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 ZBTB8OSQ8IWT0 167 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 REXO1L1PQ8IX06 675 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 EXOC8Q8IYI6 725 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 CEP120Q8N960 986 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 ZNF397Q8NF99 534 aaPredicted RBP4.5□□□□□ -1.69
MCF2-201ENST00000338585 LMO3Q8TAP4 145 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 MFSD14AQ96MC6 490 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 ACO2Q99798 780 aaKnown RBP4.5□□□□□ -1.69
MCF2-201ENST00000338585 TCHPQ9BT92 498 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 MSTO1Q9BUK6 570 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 NAA15Q9BXJ9 866 aaKnown RBP4.5□□□□□ -1.69
MCF2-201ENST00000338585 MRPL4Q9BYD3 311 aaKnown RBP4.5□□□□□ -1.69
MCF2-201ENST00000338585 TMEM117Q9H0C3 514 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 INTS2Q9H0H0 1204 aaKnown RBP4.5□□□□□ -1.69
MCF2-201ENST00000338585 FZD8Q9H461 694 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 CDHR5Q9HBB8 845 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 PDE11AQ9HCR9 933 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 PLCB1Q9NQ66 1216 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 KCND1Q9NSA2 647 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 ARHGAP20Q9P2F6 1191 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 SRRDQ9UH36 339 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 KCNG1Q9UIX4 513 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 TSKSQ9UJT2 592 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 PLAGL2Q9UPG8 496 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 GINS2Q9Y248 185 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 REXO2Q9Y3B8 237 aaKnown RBP4.5□□□□□ -1.69
MCF2-201ENST00000338585 ADGRG1Q9Y653 693 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 PTPRJQ12913 1337 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 KAT6AQ92794 2004 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 TRIP12Q14669 1992 aaPredicted RBP4.5□□□□□ -1.69
MCF2-201ENST00000338585 GTPBP10A4D1E9 387 aaKnown RBP4.5□□□□□ -1.69
MCF2-201ENST00000338585 ZNF233A6NK53 670 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 GPR25O00155 361 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 ACKR2O00590 384 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 MAPK13O15264 365 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 TREHO43280 583 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 EXTL3O43909 919 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 FAM189A1O60320 539 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 TOM1L1O75674 476 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 NDUFA10O95299 355 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 HNRNPH3P31942 346 aaKnown RBP4.5□□□□□ -1.69
MCF2-201ENST00000338585 MAP2K2P36507 400 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 MXI1P50539 228 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 GPC3P51654 580 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 OSTNP61366 133 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 ADAM17P78536 824 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 PRPF4BQ13523 1007 aaKnown RBP4.5□□□□□ -1.69
MCF2-201ENST00000338585 AMHR2Q16671 573 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 TSR1Q2NL82 804 aaKnown RBP4.5□□□□□ -1.69
MCF2-201ENST00000338585 EPC2Q52LR7 807 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 DNTTIP2Q5QJE6 756 aaKnown RBP4.5□□□□□ -1.69
MCF2-201ENST00000338585 HGSNATQ68CP4 663 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 PHLDB3Q6NSJ2 640 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 ZPBP2Q6X784 338 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 NYAP1Q6ZVC0 841 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 TAS1R2Q8TE23 839 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 NLRP7Q8WX94 980 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 ZNF516Q92618 1163 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 SEMA4DQ92854 862 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 CPB2Q96IY4 423 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 SCLT1Q96NL6 688 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 CFHR5Q9BXR6 569 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 C2orf40Q9H1Z8 148 aa4.5□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms