RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 FAM189A1O60320 539 aa16.79■□□□□ 0.28
LIMS1-202ENST00000338045 TBC1D8O95759 1140 aa16.79■□□□□ 0.28
LIMS1-202ENST00000338045 SERPING1P05155 500 aa16.79■□□□□ 0.28
LIMS1-202ENST00000338045 PLEKP08567 350 aaPredicted RBP16.79■□□□□ 0.28
LIMS1-202ENST00000338045 RFX1P22670 979 aa16.79■□□□□ 0.28
LIMS1-202ENST00000338045 PROZP22891 400 aa16.79■□□□□ 0.28
LIMS1-202ENST00000338045 PHKA2P46019 1235 aa16.79■□□□□ 0.28
LIMS1-202ENST00000338045 FAM187BQ17R55 369 aa16.79■□□□□ 0.28
LIMS1-202ENST00000338045 ASTE1Q2TB18 679 aaPredicted RBP16.79■□□□□ 0.28
LIMS1-202ENST00000338045 IQCEQ6IPM2 695 aa16.79■□□□□ 0.28
LIMS1-202ENST00000338045 TSHZ1Q6ZSZ6 1077 aa16.79■□□□□ 0.28
LIMS1-202ENST00000338045 LMBR1Q8WVP7 490 aa16.79■□□□□ 0.28
LIMS1-202ENST00000338045 CCDC127Q96BQ5 260 aa16.79■□□□□ 0.28
LIMS1-202ENST00000338045 CCDC42Q96M95 316 aa16.79■□□□□ 0.28
LIMS1-202ENST00000338045 PTPRHQ9HD43 1115 aa16.79■□□□□ 0.28
LIMS1-202ENST00000338045 CASP8AP2Q9UKL3 1982 aa16.79■□□□□ 0.28
LIMS1-202ENST00000338045 MBLAC1A4D2B0 266 aaPredicted RBP16.78■□□□□ 0.28
LIMS1-202ENST00000338045 LCA5LO95447 670 aa16.78■□□□□ 0.28
LIMS1-202ENST00000338045 ETF1P62495 437 aaKnown RBP16.78■□□□□ 0.28
LIMS1-202ENST00000338045 MCL1Q07820 350 aa16.78■□□□□ 0.28
LIMS1-202ENST00000338045 KIAA0753Q2KHM9 967 aa16.78■□□□□ 0.28
LIMS1-202ENST00000338045 SLC9C1Q4G0N8 1177 aa16.78■□□□□ 0.28
LIMS1-202ENST00000338045 KRT39Q6A163 491 aa16.78■□□□□ 0.28
LIMS1-202ENST00000338045 ZNF662Q6ZS27 426 aa16.78■□□□□ 0.28
LIMS1-202ENST00000338045 KIAA0319LQ8IZA0 1049 aa16.78■□□□□ 0.28
LIMS1-202ENST00000338045 SPAG5Q96R06 1193 aa16.78■□□□□ 0.28
LIMS1-202ENST00000338045 MINDY3Q9H8M7 445 aa16.78■□□□□ 0.28
LIMS1-202ENST00000338045 SETD4Q9NVD3 440 aa16.78■□□□□ 0.28
LIMS1-202ENST00000338045 ANKFY1Q9P2R3 1169 aa16.78■□□□□ 0.28
LIMS1-202ENST00000338045 INO80B-WBP1J3KQ70 363 aa16.78■□□□□ 0.28
LIMS1-202ENST00000338045 SMIM10L2AP0DMW4 78 aa16.78■□□□□ 0.28
LIMS1-202ENST00000338045 SMIM10L2BP0DMW5 78 aa16.78■□□□□ 0.28
LIMS1-202ENST00000338045 EIF4A3P38919 411 aaKnown RBP16.78■□□□□ 0.28
LIMS1-202ENST00000338045 ACOT2P49753 483 aa16.78■□□□□ 0.28
LIMS1-202ENST00000338045 NKX3-2P78367 333 aa16.78■□□□□ 0.28
LIMS1-202ENST00000338045 KRT83P78385 493 aa16.78■□□□□ 0.28
LIMS1-202ENST00000338045 ADAM17P78536 824 aa16.78■□□□□ 0.28
LIMS1-202ENST00000338045 RAPGEF1Q13905 1077 aa16.78■□□□□ 0.28
LIMS1-202ENST00000338045 MFSD10Q14728 455 aa16.78■□□□□ 0.28
LIMS1-202ENST00000338045 FSCN1Q16658 493 aaKnown RBP16.78■□□□□ 0.28
LIMS1-202ENST00000338045 GJB7Q6PEY0 223 aa16.78■□□□□ 0.28
LIMS1-202ENST00000338045 IRF2BP2Q7Z5L9 587 aa16.78■□□□□ 0.28
LIMS1-202ENST00000338045 MAP7D2Q96T17 732 aa16.78■□□□□ 0.28
LIMS1-202ENST00000338045 POP1Q99575 1024 aaKnown RBP16.78■□□□□ 0.28
LIMS1-202ENST00000338045 STK33Q9BYT3 514 aa16.78■□□□□ 0.28
LIMS1-202ENST00000338045 INO80BQ9C086 356 aaPredicted RBP16.78■□□□□ 0.28
LIMS1-202ENST00000338045 PRMT7Q9NVM4 692 aaPredicted RBP16.78■□□□□ 0.28
LIMS1-202ENST00000338045 AKT3Q9Y243 479 aa16.78■□□□□ 0.28
LIMS1-202ENST00000338045 A0A087WZ62 844 aa16.77■□□□□ 0.27
LIMS1-202ENST00000338045 A0A0U1RQJ8 604 aa16.77■□□□□ 0.27
LIMS1-202ENST00000338045 VTNP04004 478 aa16.77■□□□□ 0.27
LIMS1-202ENST00000338045 IQCF3P0C7M6 154 aa16.77■□□□□ 0.27
LIMS1-202ENST00000338045 MAP2K2P36507 400 aa16.77■□□□□ 0.27
LIMS1-202ENST00000338045 PRKCIP41743 596 aa16.77■□□□□ 0.27
LIMS1-202ENST00000338045 PSEN2P49810 448 aa16.77■□□□□ 0.27
LIMS1-202ENST00000338045 KIF11P52732 1056 aa16.77■□□□□ 0.27
LIMS1-202ENST00000338045 GJA9P57773 515 aa16.77■□□□□ 0.27
LIMS1-202ENST00000338045 KIF22Q14807 665 aa16.77■□□□□ 0.27
LIMS1-202ENST00000338045 ASIC2Q16515 512 aa16.77■□□□□ 0.27
LIMS1-202ENST00000338045 PHLDB3Q6NSJ2 640 aa16.77■□□□□ 0.27
LIMS1-202ENST00000338045 NFRKBQ6P4R8 1299 aa16.77■□□□□ 0.27
LIMS1-202ENST00000338045 C15orf39Q6ZRI6 1047 aa16.77■□□□□ 0.27
LIMS1-202ENST00000338045 ATRIPQ8WXE1 791 aa16.77■□□□□ 0.27
LIMS1-202ENST00000338045 ZNF668Q96K58 619 aaPredicted RBP16.77■□□□□ 0.27
LIMS1-202ENST00000338045 FDXACB1Q9BRP7 624 aaPredicted RBP16.77■□□□□ 0.27
LIMS1-202ENST00000338045 KATNAL1Q9BW62 490 aa16.77■□□□□ 0.27
LIMS1-202ENST00000338045 DNAJC12Q9UKB3 198 aa16.77■□□□□ 0.27
LIMS1-202ENST00000338045 KAT6AQ92794 2004 aa16.77■□□□□ 0.27
LIMS1-202ENST00000338045 ZNF263O14978 683 aa16.76■□□□□ 0.27
LIMS1-202ENST00000338045 ARHGAP25P42331 645 aa16.76■□□□□ 0.27
LIMS1-202ENST00000338045 GPC3P51654 580 aa16.76■□□□□ 0.27
LIMS1-202ENST00000338045 WNT7BP56706 349 aa16.76■□□□□ 0.27
LIMS1-202ENST00000338045 BEX3Q00994 111 aa16.76■□□□□ 0.27
LIMS1-202ENST00000338045 PRPF4BQ13523 1007 aaKnown RBP16.76■□□□□ 0.27
LIMS1-202ENST00000338045 AMHR2Q16671 573 aa16.76■□□□□ 0.27
LIMS1-202ENST00000338045 ZBTB41Q5SVQ8 909 aa16.76■□□□□ 0.27
LIMS1-202ENST00000338045 ATF7IP2Q5U623 682 aa16.76■□□□□ 0.27
LIMS1-202ENST00000338045 MPZL3Q6UWV2 235 aa16.76■□□□□ 0.27
LIMS1-202ENST00000338045 SV2AQ7L0J3 742 aa16.76■□□□□ 0.27
LIMS1-202ENST00000338045 ZNF410Q86VK4 478 aa16.76■□□□□ 0.27
LIMS1-202ENST00000338045 ZNF784Q8NCA9 323 aaPredicted RBP16.76■□□□□ 0.27
LIMS1-202ENST00000338045 PRIMPOLQ96LW4 560 aa16.76■□□□□ 0.27
LIMS1-202ENST00000338045 GPR88Q9GZN0 384 aa16.76■□□□□ 0.27
LIMS1-202ENST00000338045 UPF3AQ9H1J1 476 aaKnown RBP16.76■□□□□ 0.27
LIMS1-202ENST00000338045 TOPORSQ9NS56 1045 aaPredicted RBP16.76■□□□□ 0.27
LIMS1-202ENST00000338045 RNF186Q9NXI6 227 aa16.76■□□□□ 0.27
LIMS1-202ENST00000338045 RBAKQ9NYW8 714 aaPredicted RBP16.76■□□□□ 0.27
LIMS1-202ENST00000338045 TNFSF13BQ9Y275 285 aa16.76■□□□□ 0.27
LIMS1-202ENST00000338045 BZW2Q9Y6E2 419 aaKnown RBP16.76■□□□□ 0.27
LIMS1-202ENST00000338045 CNTNAP2Q9UHC6 1331 aa16.76■□□□□ 0.27
LIMS1-202ENST00000338045 F8VZ95 297 aa16.76■□□□□ 0.27
LIMS1-202ENST00000338045 RBAK-RBAKDNI3L0D1 243 aa16.76■□□□□ 0.27
LIMS1-202ENST00000338045 OGTO15294 1046 aa16.76■□□□□ 0.27
LIMS1-202ENST00000338045 SEPT4O43236 478 aa16.76■□□□□ 0.27
LIMS1-202ENST00000338045 B4GALT5O43286 388 aa16.76■□□□□ 0.27
LIMS1-202ENST00000338045 KPNA6O60684 536 aa16.76■□□□□ 0.27
LIMS1-202ENST00000338045 IPO7O95373 1038 aaKnown RBP16.76■□□□□ 0.27
LIMS1-202ENST00000338045 DLATP10515 647 aaKnown RBP16.76■□□□□ 0.27
LIMS1-202ENST00000338045 HOXC8P31273 242 aa16.76■□□□□ 0.27
LIMS1-202ENST00000338045 MATR3P43243 847 aaKnown RBP eCLIP16.76■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms