RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 TYK2P29597 1187 aa15.06■□□□□ 0
COL7A1-201ENST00000328333 AP3B2Q13367 1082 aa15.06■□□□□ 0
COL7A1-201ENST00000328333 SPOUT1Q5T280 376 aaKnown RBP15.06■□□□□ 0
COL7A1-201ENST00000328333 ZNF473Q8WTR7 871 aaKnown RBP15.06■□□□□ 0
COL7A1-201ENST00000328333 ANKRD7Q92527 254 aa15.06■□□□□ 0
COL7A1-201ENST00000328333 COX16Q9P0S2 106 aa15.06■□□□□ 0
COL7A1-201ENST00000328333 TRPM1Q7Z4N2 1603 aa15.06■□□□□ 0
COL7A1-201ENST00000328333 USP17L12C9JPN9 530 aa15.06■□□□□ 0
COL7A1-201ENST00000328333 USP17L21D6R901 530 aa15.06■□□□□ 0
COL7A1-201ENST00000328333 PTH1RQ03431 593 aa15.06■□□□□ 0
COL7A1-201ENST00000328333 NCF4Q15080 339 aa15.06■□□□□ 0
COL7A1-201ENST00000328333 PLEKHA8Q96JA3 519 aa15.06■□□□□ 0
COL7A1-201ENST00000328333 C4orf22Q6V702 233 aa15.06■□□□□ 0
COL7A1-201ENST00000328333 ATL2Q8NHH9 583 aa15.06■□□□□ 0
COL7A1-201ENST00000328333 PI4K2BQ8TCG2 481 aa15.06■□□□□ 0
COL7A1-201ENST00000328333 SUCLG2Q96I99 432 aa15.06■□□□□ 0
COL7A1-201ENST00000328333 XPO5Q9HAV4 1204 aaKnown RBP eCLIP15.06■□□□□ 0
COL7A1-201ENST00000328333 MKL2Q9ULH7 1088 aa15.06■□□□□ 0
COL7A1-201ENST00000328333 HPS5Q9UPZ3 1129 aa15.06■□□□□ 0
COL7A1-201ENST00000328333 KNL1Q8NG31 2342 aa15.06■□□□□ 0
COL7A1-201ENST00000328333 ALBP02768 609 aa15.06■□□□□ 0
COL7A1-201ENST00000328333 PSAPP07602 524 aa15.06■□□□□ 0
COL7A1-201ENST00000328333 PLA2G4BP0C869 781 aa15.06■□□□□ 0
COL7A1-201ENST00000328333 ILF2Q12905 390 aaKnown RBP15.06■□□□□ 0
COL7A1-201ENST00000328333 GCNAQ96QF7 691 aa15.06■□□□□ 0
COL7A1-201ENST00000328333 CSADQ9Y600 493 aa15.06■□□□□ 0
COL7A1-201ENST00000328333 TRIM24O15164 1050 aa15.05■□□□□ 0
COL7A1-201ENST00000328333 ATP5BP06576 529 aaKnown RBP15.05■□□□□ 0
COL7A1-201ENST00000328333 KITP10721 976 aa15.05■□□□□ 0
COL7A1-201ENST00000328333 TALDO1P37837 337 aa15.05■□□□□ 0
COL7A1-201ENST00000328333 COPAP53621 1224 aa15.05■□□□□ 0
COL7A1-201ENST00000328333 AP3M2P53677 418 aa15.05■□□□□ 0
COL7A1-201ENST00000328333 KCNA1Q09470 495 aa15.05■□□□□ 0
COL7A1-201ENST00000328333 TMC5Q6UXY8 1006 aa15.05■□□□□ 0
COL7A1-201ENST00000328333 APOL4Q9BPW4 351 aa15.05■□□□□ 0
COL7A1-201ENST00000328333 CD209Q9NNX6 404 aa15.05■□□□□ 0
COL7A1-201ENST00000328333 SZRD1Q7Z422 152 aa15.05■□□□□ 0
COL7A1-201ENST00000328333 SMYD4Q8IYR2 804 aaPredicted RBP15.05■□□□□ 0
COL7A1-201ENST00000328333 CLEC4MQ9H2X3 399 aaPredicted RBP15.05■□□□□ 0
COL7A1-201ENST00000328333 PAPOLBQ9NRJ5 636 aaKnown RBP15.05■□□□□ 0
COL7A1-201ENST00000328333 SLC9A2Q9UBY0 812 aa15.05■□□□□ 0
COL7A1-201ENST00000328333 hCG_1642624A0A1W2PR95 340 aa15.05■□□□□ 0
COL7A1-201ENST00000328333 CCNYL1Q8N7R7 359 aa15.05■□□□□ 0
COL7A1-201ENST00000328333 DLGAP2Q9P1A6 1054 aa15.05■□□□□ 0
COL7A1-201ENST00000328333 FBXL5Q9UKA1 691 aa15.05■□□□□ 0
COL7A1-201ENST00000328333 CCDC195A0A1B0GUA6 201 aa15.05■□□□□ -0
COL7A1-201ENST00000328333 ASNA1O43681 348 aa15.05■□□□□ -0
COL7A1-201ENST00000328333 TRIP10Q15642 601 aa15.05■□□□□ -0
COL7A1-201ENST00000328333 TRMT5Q32P41 509 aaKnown RBP15.05■□□□□ -0
COL7A1-201ENST00000328333 CDC26Q8NHZ8 85 aa15.05■□□□□ -0
COL7A1-201ENST00000328333 SYTL2Q9HCH5 934 aa15.05■□□□□ -0
COL7A1-201ENST00000328333 KIF22Q14807 665 aa15.05■□□□□ -0
COL7A1-201ENST00000328333 RTL3Q8N8U3 475 aaKnown RBP15.05■□□□□ -0
COL7A1-201ENST00000328333 KANSL2Q9H9L4 492 aa15.05■□□□□ -0
COL7A1-201ENST00000328333 TRPC5OSA6NMA1 111 aa15.05■□□□□ -0
COL7A1-201ENST00000328333 KRT6AP02538 564 aa15.05■□□□□ -0
COL7A1-201ENST00000328333 NR3C1P04150 777 aa15.05■□□□□ -0
COL7A1-201ENST00000328333 IL13P35225 146 aa15.05■□□□□ -0
COL7A1-201ENST00000328333 ANKS3Q6ZW76 656 aa15.05■□□□□ -0
COL7A1-201ENST00000328333 TRPC7Q9HCX4 862 aa15.05■□□□□ -0
COL7A1-201ENST00000328333 UBAP1Q9NZ09 502 aa15.05■□□□□ -0
COL7A1-201ENST00000328333 PER1O15534 1290 aaPredicted RBP15.05■□□□□ -0
COL7A1-201ENST00000328333 ABL1P00519 1130 aa15.05■□□□□ -0
COL7A1-201ENST00000328333 CCNA1P78396 465 aa15.05■□□□□ -0
COL7A1-201ENST00000328333 FAM45BPQ6NSW5 357 aa15.05■□□□□ -0
COL7A1-201ENST00000328333 ARHGAP27Q6ZUM4 889 aa15.05■□□□□ -0
COL7A1-201ENST00000328333 STAG2Q8N3U4 1231 aa15.05■□□□□ -0
COL7A1-201ENST00000328333 VPS37AQ8NEZ2 397 aa15.05■□□□□ -0
COL7A1-201ENST00000328333 FAM167AQ96KS9 214 aa15.05■□□□□ -0
COL7A1-201ENST00000328333 EYA1Q99502 592 aa15.05■□□□□ -0
COL7A1-201ENST00000328333 ZWILCHQ9H900 591 aa15.05■□□□□ -0
COL7A1-201ENST00000328333 TNFAIP2Q03169 654 aa15.04■□□□□ -0
COL7A1-201ENST00000328333 KDSRQ06136 332 aa15.04■□□□□ -0
COL7A1-201ENST00000328333 LONP2Q86WA8 852 aa15.04■□□□□ -0
COL7A1-201ENST00000328333 ZBTB38Q8NAP3 1195 aaPredicted RBP15.04■□□□□ -0
COL7A1-201ENST00000328333 ZFYVE19Q96K21 471 aa15.04■□□□□ -0
COL7A1-201ENST00000328333 VPS33BQ9H267 617 aa15.04■□□□□ -0
COL7A1-201ENST00000328333 MYH7BA7E2Y1 1941 aa15.04■□□□□ -0
COL7A1-201ENST00000328333 CLASP2O75122 1294 aaKnown RBP15.04■□□□□ -0
COL7A1-201ENST00000328333 ABI1Q8IZP0 508 aa15.04■□□□□ -0
COL7A1-201ENST00000328333 RPF1Q9H9Y2 349 aaKnown RBP15.04■□□□□ -0
COL7A1-201ENST00000328333 PARVAQ9NVD7 372 aa15.04■□□□□ -0
COL7A1-201ENST00000328333 FASTKD1Q53R41 847 aaKnown RBP15.04■□□□□ -0
COL7A1-201ENST00000328333 NFRKBQ6P4R8 1299 aa15.04■□□□□ -0
COL7A1-201ENST00000328333 RYBPQ8N488 228 aaPredicted RBP15.04■□□□□ -0
COL7A1-201ENST00000328333 SNX12Q9UMY4 172 aa15.04■□□□□ -0
COL7A1-201ENST00000328333 PZPP20742 1482 aa15.04■□□□□ -0
COL7A1-201ENST00000328333 SCP2P22307 547 aa15.04■□□□□ -0
COL7A1-201ENST00000328333 KRT33BQ14525 404 aa15.04■□□□□ -0
COL7A1-201ENST00000328333 GPIHBP1Q8IV16 184 aa15.04■□□□□ -0
COL7A1-201ENST00000328333 DNAJC12Q9UKB3 198 aa15.04■□□□□ -0
COL7A1-201ENST00000328333 KPNA4O00629 521 aaPredicted RBP15.04■□□□□ -0
COL7A1-201ENST00000328333 SH2B2O14492 632 aaPredicted RBP15.04■□□□□ -0
COL7A1-201ENST00000328333 RHOBTB1O94844 696 aa15.04■□□□□ -0
COL7A1-201ENST00000328333 CAPN1P07384 714 aa15.04■□□□□ -0
COL7A1-201ENST00000328333 SFSWAPQ12872 951 aaKnown RBP15.04■□□□□ -0
COL7A1-201ENST00000328333 POLA2Q14181 598 aa15.04■□□□□ -0
COL7A1-201ENST00000328333 MXD4Q14582 209 aaPredicted RBP15.04■□□□□ -0
COL7A1-201ENST00000328333 ITIH2P19823 946 aa15.04■□□□□ -0
COL7A1-201ENST00000328333 MFN1Q8IWA4 741 aa15.04■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 93.4 ms