RNA–Protein interactions for RNA: ENST00000309428.9

RETREG3-201, Transcript of reticulophagy regulator family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RETREG3, Length 3,759 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG3-201ENST00000309428 RAD23BP54727 409 aa13.56□□□□□ -0.24
RETREG3-201ENST00000309428 NAB2Q15742 525 aa13.56□□□□□ -0.24
RETREG3-201ENST00000309428 ANKRD20A8PQ5CZ79 823 aa13.56□□□□□ -0.24
RETREG3-201ENST00000309428 ATG4CQ96DT6 458 aa13.56□□□□□ -0.24
RETREG3-201ENST00000309428 SHANK3Q9BYB0 1731 aa13.56□□□□□ -0.24
RETREG3-201ENST00000309428 FOXO6A8MYZ6 492 aa13.55□□□□□ -0.24
RETREG3-201ENST00000309428 PIK3R2O00459 728 aa13.55□□□□□ -0.24
RETREG3-201ENST00000309428 EYA4O95677 639 aa13.55□□□□□ -0.24
RETREG3-201ENST00000309428 AP3B2Q13367 1082 aa13.55□□□□□ -0.24
RETREG3-201ENST00000309428 RCN2Q14257 317 aa13.55□□□□□ -0.24
RETREG3-201ENST00000309428 SGO2Q562F6 1265 aa13.55□□□□□ -0.24
RETREG3-201ENST00000309428 ISCUQ9H1K1 167 aa13.55□□□□□ -0.24
RETREG3-201ENST00000309428 KCTD10Q9H3F6 313 aa13.55□□□□□ -0.24
RETREG3-201ENST00000309428 GABBR1Q9UBS5 961 aa13.55□□□□□ -0.24
RETREG3-201ENST00000309428 PPP1R9AQ9ULJ8 1098 aa13.55□□□□□ -0.24
RETREG3-201ENST00000309428 DENND3A2RUS2 1198 aa13.55□□□□□ -0.24
RETREG3-201ENST00000309428 DDX3XO00571 662 aaKnown RBP eCLIP13.55□□□□□ -0.243e-16■■■■□ 25.4
RETREG3-201ENST00000309428 RBBP5Q15291 538 aaKnown RBP13.55□□□□□ -0.24
RETREG3-201ENST00000309428 ETNPPLQ8TBG4 499 aa13.55□□□□□ -0.24
RETREG3-201ENST00000309428 C9orf72Q96LT7 481 aa13.55□□□□□ -0.24
RETREG3-201ENST00000309428 FNBP1Q96RU3 617 aa13.55□□□□□ -0.24
RETREG3-201ENST00000309428 AGPAT3Q9NRZ7 376 aa13.55□□□□□ -0.24
RETREG3-201ENST00000309428 CASZ1Q86V15 1759 aa13.55□□□□□ -0.24
RETREG3-201ENST00000309428 IRS2Q9Y4H2 1338 aa13.55□□□□□ -0.24
RETREG3-201ENST00000309428 CCDC188H7C350 402 aa13.55□□□□□ -0.24
RETREG3-201ENST00000309428 hCG_1984214I3L0E3 225 aa13.55□□□□□ -0.24
RETREG3-201ENST00000309428 DNM1LO00429 736 aa13.55□□□□□ -0.24
RETREG3-201ENST00000309428 KIF1CO43896 1103 aaKnown RBP13.55□□□□□ -0.24
RETREG3-201ENST00000309428 YY1P25490 414 aa13.55□□□□□ -0.24
RETREG3-201ENST00000309428 SPOPLQ6IQ16 392 aa13.55□□□□□ -0.24
RETREG3-201ENST00000309428 HAUS6Q7Z4H7 955 aa13.55□□□□□ -0.24
RETREG3-201ENST00000309428 ZNF713Q8N859 430 aaPredicted RBP13.55□□□□□ -0.24
RETREG3-201ENST00000309428 WNK4Q96J92 1243 aa13.55□□□□□ -0.24
RETREG3-201ENST00000309428 CEP63Q96MT8 703 aa13.55□□□□□ -0.24
RETREG3-201ENST00000309428 WRNIP1Q96S55 665 aa13.55□□□□□ -0.24
RETREG3-201ENST00000309428 KCNMB3Q9NPA1 279 aa13.55□□□□□ -0.24
RETREG3-201ENST00000309428 ASTN1O14525 1302 aa13.55□□□□□ -0.24
RETREG3-201ENST00000309428 ITGB5P18084 799 aa13.54□□□□□ -0.24
RETREG3-201ENST00000309428 ANKRD20A3Q5VUR7 823 aa13.54□□□□□ -0.24
RETREG3-201ENST00000309428 OTOP1Q7RTM1 612 aa13.54□□□□□ -0.24
RETREG3-201ENST00000309428 PRUNE1Q86TP1 453 aa13.54□□□□□ -0.24
RETREG3-201ENST00000309428 CPA5Q8WXQ8 436 aa13.54□□□□□ -0.24
RETREG3-201ENST00000309428 SEMA4AQ9H3S1 761 aa13.54□□□□□ -0.24
RETREG3-201ENST00000309428 RNF19AQ9NV58 838 aa13.54□□□□□ -0.24
RETREG3-201ENST00000309428 PHLPP1O60346 1717 aa13.54□□□□□ -0.24
RETREG3-201ENST00000309428 hCG_2014768A0A024R1R8 64 aa13.54□□□□□ -0.24
RETREG3-201ENST00000309428 PIAS1O75925 651 aa13.54□□□□□ -0.24
RETREG3-201ENST00000309428 KRT19P08727 400 aa13.54□□□□□ -0.24
RETREG3-201ENST00000309428 SNHG28P0DPA3 235 aa13.54□□□□□ -0.24
RETREG3-201ENST00000309428 CA4P22748 312 aa13.54□□□□□ -0.24
RETREG3-201ENST00000309428 HOXD13P35453 343 aa13.54□□□□□ -0.24
RETREG3-201ENST00000309428 ORC1Q13415 861 aa13.54□□□□□ -0.24
RETREG3-201ENST00000309428 SNRNP48Q6IEG0 339 aaKnown RBP13.54□□□□□ -0.24
RETREG3-201ENST00000309428 ARHGEF19Q8IW93 802 aa13.54□□□□□ -0.24
RETREG3-201ENST00000309428 HIPK4Q8NE63 616 aa13.54□□□□□ -0.24
RETREG3-201ENST00000309428 FAM20AQ96MK3 541 aa13.54□□□□□ -0.24
RETREG3-201ENST00000309428 TGS1Q96RS0 853 aaKnown RBP13.54□□□□□ -0.24
RETREG3-201ENST00000309428 TSC22D3Q99576 134 aa13.54□□□□□ -0.24
RETREG3-201ENST00000309428 ABCF3Q9NUQ8 709 aa13.54□□□□□ -0.24
RETREG3-201ENST00000309428 COL20A1Q9P218 1284 aa13.54□□□□□ -0.24
RETREG3-201ENST00000309428 DYNC1LI1Q9Y6G9 523 aaKnown RBP13.54□□□□□ -0.24
RETREG3-201ENST00000309428 GRIN2DO15399 1336 aa13.54□□□□□ -0.24
RETREG3-201ENST00000309428 IGSF9BQ9UPX0 1349 aa13.54□□□□□ -0.24
RETREG3-201ENST00000309428 SPDYE2BA6NHP3 402 aa13.54□□□□□ -0.24
RETREG3-201ENST00000309428 GOLGA8SH3BPF8 625 aa13.54□□□□□ -0.24
RETREG3-201ENST00000309428 GOLGA8MH3BSY2 632 aa13.54□□□□□ -0.24
RETREG3-201ENST00000309428 TGFB1I1O43294 461 aa13.54□□□□□ -0.24
RETREG3-201ENST00000309428 SGPL1O95470 568 aa13.54□□□□□ -0.24
RETREG3-201ENST00000309428 GAS8O95995 478 aa13.54□□□□□ -0.24
RETREG3-201ENST00000309428 SHBGP04278 402 aa13.54□□□□□ -0.24
RETREG3-201ENST00000309428 SPDYE6P0CI01 402 aa13.54□□□□□ -0.24
RETREG3-201ENST00000309428 SREBF1P36956 1147 aa13.54□□□□□ -0.24
RETREG3-201ENST00000309428 NBPF12Q5TAG4 269 aaPredicted RBP13.54□□□□□ -0.24
RETREG3-201ENST00000309428 ZC3H18Q86VM9 953 aaKnown RBP13.54□□□□□ -0.24
RETREG3-201ENST00000309428 ATG4AQ8WYN0 398 aa13.54□□□□□ -0.24
RETREG3-201ENST00000309428 SH3GL2Q99962 352 aa13.54□□□□□ -0.24
RETREG3-201ENST00000309428 GLT8D2Q9H1C3 349 aa13.54□□□□□ -0.24
RETREG3-201ENST00000309428 PASKQ96RG2 1323 aa13.54□□□□□ -0.24
RETREG3-201ENST00000309428 A0A0G2JND7 137 aa13.53□□□□□ -0.24
RETREG3-201ENST00000309428 FSBPO95073 299 aa13.53□□□□□ -0.24
RETREG3-201ENST00000309428 SRGAP2CP0DJJ0 459 aa13.53□□□□□ -0.24
RETREG3-201ENST00000309428 DYNLT1P63172 113 aa13.53□□□□□ -0.24
RETREG3-201ENST00000309428 KYNUQ16719 465 aa13.53□□□□□ -0.24
RETREG3-201ENST00000309428 UGCGQ16739 394 aa13.53□□□□□ -0.24
RETREG3-201ENST00000309428 CCDC137Q6PK04 289 aaKnown RBP13.53□□□□□ -0.24
RETREG3-201ENST00000309428 RNF207Q6ZRF8 634 aa13.53□□□□□ -0.24
RETREG3-201ENST00000309428 ARMC9Q7Z3E5 817 aa13.53□□□□□ -0.24
RETREG3-201ENST00000309428 KRT35Q92764 455 aa13.53□□□□□ -0.24
RETREG3-201ENST00000309428 MIEF2Q96C03 454 aa13.53□□□□□ -0.24
RETREG3-201ENST00000309428 C18orf8Q96DM3 657 aa13.53□□□□□ -0.24
RETREG3-201ENST00000309428 RPAP3Q9H6T3 665 aaPredicted RBP13.53□□□□□ -0.24
RETREG3-201ENST00000309428 METTL14Q9HCE5 456 aaKnown RBP13.53□□□□□ -0.24
RETREG3-201ENST00000309428 KMT5AQ9NQR1 393 aa13.53□□□□□ -0.24
RETREG3-201ENST00000309428 TRIM33Q9UPN9 1127 aa13.53□□□□□ -0.24
RETREG3-201ENST00000309428 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.53□□□□□ -0.24
RETREG3-201ENST00000309428 SSU72P8A0A1W2PR75 194 aa13.53□□□□□ -0.24
RETREG3-201ENST00000309428 PI4K2BG5E9Z4 385 aa13.53□□□□□ -0.24
RETREG3-201ENST00000309428 RXRBP28702 533 aa13.53□□□□□ -0.24
RETREG3-201ENST00000309428 ATP5DP30049 168 aa13.53□□□□□ -0.24
RETREG3-201ENST00000309428 KCNJ2P63252 427 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms