RNA–Protein interactions for RNA: ENST00000292476.9

CPSF4-201, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CPSF4, Length 1,691 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-201ENST00000292476 KCNA1Q09470 495 aa18.24■□□□□ 0.51
CPSF4-201ENST00000292476 IER5Q5VY09 327 aa18.24■□□□□ 0.51
CPSF4-201ENST00000292476 MMGT1Q8N4V1 131 aa18.24■□□□□ 0.51
CPSF4-201ENST00000292476 PXYLP1Q8TE99 480 aa18.24■□□□□ 0.51
CPSF4-201ENST00000292476 COPS5Q92905 334 aa18.24■□□□□ 0.51
CPSF4-201ENST00000292476 DMAC2Q9NW81 257 aa18.24■□□□□ 0.51
CPSF4-201ENST00000292476 ARID2Q68CP9 1835 aa18.24■□□□□ 0.51
CPSF4-201ENST00000292476 POLR3GO15318 223 aaPredicted RBP18.23■□□□□ 0.51
CPSF4-201ENST00000292476 TFRCP02786 760 aaKnown RBP18.23■□□□□ 0.51
CPSF4-201ENST00000292476 INHAP05111 366 aa18.23■□□□□ 0.51
CPSF4-201ENST00000292476 ARL2P36404 184 aa18.23■□□□□ 0.51
CPSF4-201ENST00000292476 KCNMA1Q12791 1236 aa18.23■□□□□ 0.51
CPSF4-201ENST00000292476 MXD4Q14582 209 aaPredicted RBP18.23■□□□□ 0.51
CPSF4-201ENST00000292476 CASP8Q14790 479 aa18.23■□□□□ 0.51
CPSF4-201ENST00000292476 CCL14Q16627 93 aa18.23■□□□□ 0.51
CPSF4-201ENST00000292476 ZNF484Q5JVG2 852 aa18.23■□□□□ 0.51
CPSF4-201ENST00000292476 MAP4K3Q8IVH8 894 aa18.23■□□□□ 0.51
CPSF4-201ENST00000292476 TRIB2Q92519 343 aa18.23■□□□□ 0.51
CPSF4-201ENST00000292476 CEP89Q96ST8 783 aa18.23■□□□□ 0.51
CPSF4-201ENST00000292476 TRPC6Q9Y210 931 aa18.23■□□□□ 0.51
CPSF4-201ENST00000292476 MCM3APO60318 1980 aa18.23■□□□□ 0.51
CPSF4-201ENST00000292476 ATP8B3O60423 1300 aa18.22■□□□□ 0.51
CPSF4-201ENST00000292476 MACROD2A1Z1Q3 448 aa18.22■□□□□ 0.51
CPSF4-201ENST00000292476 DENND3A2RUS2 1198 aa18.22■□□□□ 0.51
CPSF4-201ENST00000292476 CLIC2O15247 247 aa18.22■□□□□ 0.51
CPSF4-201ENST00000292476 MAPK13O15264 365 aa18.22■□□□□ 0.51
CPSF4-201ENST00000292476 PLEKP08567 350 aaPredicted RBP18.22■□□□□ 0.51
CPSF4-201ENST00000292476 MAGEA1P43355 309 aa18.22■□□□□ 0.51
CPSF4-201ENST00000292476 TNFAIP2Q03169 654 aa18.22■□□□□ 0.51
CPSF4-201ENST00000292476 TRIM32Q13049 653 aa18.22■□□□□ 0.51
CPSF4-201ENST00000292476 PLCB4Q15147 1175 aa18.22■□□□□ 0.51
CPSF4-201ENST00000292476 DGKDQ16760 1214 aa18.22■□□□□ 0.51
CPSF4-201ENST00000292476 BRDTQ58F21 947 aaPredicted RBP18.22■□□□□ 0.51
CPSF4-201ENST00000292476 SFMBT2Q5VUG0 894 aa18.22■□□□□ 0.51
CPSF4-201ENST00000292476 HGSNATQ68CP4 663 aa18.22■□□□□ 0.51
CPSF4-201ENST00000292476 FAM186BQ8IYM0 893 aa18.22■□□□□ 0.51
CPSF4-201ENST00000292476 CAGE1Q8TC20 777 aa18.22■□□□□ 0.51
CPSF4-201ENST00000292476 FAM71BQ8TC56 605 aa18.22■□□□□ 0.51
CPSF4-201ENST00000292476 Q9Y3F1 56 aa18.22■□□□□ 0.51
CPSF4-201ENST00000292476 HYOU1Q9Y4L1 999 aa18.22■□□□□ 0.51
CPSF4-201ENST00000292476 KIAA0100Q14667 2235 aaKnown RBP18.22■□□□□ 0.51
CPSF4-201ENST00000292476 COL1A2P08123 1366 aa18.22■□□□□ 0.51
CPSF4-201ENST00000292476 H3BQF6 201 aa18.22■□□□□ 0.51
CPSF4-201ENST00000292476 MAGEB2O15479 319 aa18.22■□□□□ 0.51
CPSF4-201ENST00000292476 EXOC3O60645 756 aa18.22■□□□□ 0.51
CPSF4-201ENST00000292476 AKAP3O75969 853 aa18.22■□□□□ 0.51
CPSF4-201ENST00000292476 LGALS2P05162 132 aa18.22■□□□□ 0.51
CPSF4-201ENST00000292476 AARSP49588 968 aaKnown RBP eCLIP18.22■□□□□ 0.512e-6■■■■■ 40.7
CPSF4-201ENST00000292476 STRN3Q13033 797 aa18.22■□□□□ 0.51
CPSF4-201ENST00000292476 OR6J1Q8NGC5 347 aa18.22■□□□□ 0.51
CPSF4-201ENST00000292476 DEPTORQ8TB45 409 aa18.22■□□□□ 0.51
CPSF4-201ENST00000292476 ARHGAP28Q9P2N2 729 aa18.22■□□□□ 0.51
CPSF4-201ENST00000292476 RNF14Q9UBS8 474 aa18.22■□□□□ 0.51
CPSF4-201ENST00000292476 TFR2Q9UP52 801 aa18.22■□□□□ 0.51
CPSF4-201ENST00000292476 KIAA0391O15091 583 aaKnown RBP18.21■□□□□ 0.51
CPSF4-201ENST00000292476 ASAP2O43150 1006 aa18.21■□□□□ 0.51
CPSF4-201ENST00000292476 AFPP02771 609 aaKnown RBP18.21■□□□□ 0.51
CPSF4-201ENST00000292476 HMGCRP04035 888 aa18.21■□□□□ 0.51
CPSF4-201ENST00000292476 HOXD8P13378 290 aaPredicted RBP18.21■□□□□ 0.51
CPSF4-201ENST00000292476 SMPD1P17405 629 aa18.21■□□□□ 0.51
CPSF4-201ENST00000292476 MARK3P27448 753 aa18.21■□□□□ 0.51
CPSF4-201ENST00000292476 EFNA5P52803 228 aa18.21■□□□□ 0.51
CPSF4-201ENST00000292476 AFG1LQ8WV93 481 aa18.21■□□□□ 0.51
CPSF4-201ENST00000292476 PSPC1Q8WXF1 523 aaKnown RBP18.21■□□□□ 0.51
CPSF4-201ENST00000292476 NOX5Q96PH1 765 aa18.21■□□□□ 0.51
CPSF4-201ENST00000292476 TMEM106CQ9BVX2 250 aa18.21■□□□□ 0.51
CPSF4-201ENST00000292476 PDE11AQ9HCR9 933 aa18.21■□□□□ 0.51
CPSF4-201ENST00000292476 AIPL1Q9NZN9 384 aa18.21■□□□□ 0.51
CPSF4-201ENST00000292476 CALCOCO1Q9P1Z2 691 aa18.21■□□□□ 0.51
CPSF4-201ENST00000292476 DUSP10Q9Y6W6 482 aa18.21■□□□□ 0.51
CPSF4-201ENST00000292476 IGKV6-21A0A0C4DH24 114 aa18.2■□□□□ 0.5
CPSF4-201ENST00000292476 NOL4O94818 638 aa18.2■□□□□ 0.5
CPSF4-201ENST00000292476 CCL5P13501 91 aa18.2■□□□□ 0.5
CPSF4-201ENST00000292476 KRT13P13646 458 aa18.2■□□□□ 0.5
CPSF4-201ENST00000292476 ANXA13P27216 316 aa18.2■□□□□ 0.5
CPSF4-201ENST00000292476 KCNH2Q12809 1159 aa18.2■□□□□ 0.5
CPSF4-201ENST00000292476 HSP90B2PQ58FF3 399 aa18.2■□□□□ 0.5
CPSF4-201ENST00000292476 INTS8Q75QN2 995 aaKnown RBP18.2■□□□□ 0.5
CPSF4-201ENST00000292476 USP37Q86T82 979 aa18.2■□□□□ 0.5
CPSF4-201ENST00000292476 CREG2Q8IUH2 290 aa18.2■□□□□ 0.5
CPSF4-201ENST00000292476 KSR1Q8IVT5 923 aa18.2■□□□□ 0.5
CPSF4-201ENST00000292476 XXYLT1Q8NBI6 393 aa18.2■□□□□ 0.5
CPSF4-201ENST00000292476 TMEM143Q96AN5 459 aa18.2■□□□□ 0.5
CPSF4-201ENST00000292476 UNC93B1Q9H1C4 597 aa18.2■□□□□ 0.5
CPSF4-201ENST00000292476 TMEM134Q9H6X4 195 aa18.2■□□□□ 0.5
CPSF4-201ENST00000292476 PLCB1Q9NQ66 1216 aa18.2■□□□□ 0.5
CPSF4-201ENST00000292476 FLRT1Q9NZU1 646 aa18.2■□□□□ 0.5
CPSF4-201ENST00000292476 CAPN6Q9Y6Q1 641 aa18.2■□□□□ 0.5
CPSF4-201ENST00000292476 K7ERI5 159 aa18.19■□□□□ 0.5
CPSF4-201ENST00000292476 SRGAP2O75044 1071 aa18.19■□□□□ 0.5
CPSF4-201ENST00000292476 TFDP1Q14186 410 aa18.19■□□□□ 0.5
CPSF4-201ENST00000292476 C10orf76Q5T2E6 689 aa18.19■□□□□ 0.5
CPSF4-201ENST00000292476 TRIM50Q86XT4 487 aa18.19■□□□□ 0.5
CPSF4-201ENST00000292476 BSNDQ8WZ55 320 aa18.19■□□□□ 0.5
CPSF4-201ENST00000292476 LSM14BQ9BX40 385 aaKnown RBP18.19■□□□□ 0.5
CPSF4-201ENST00000292476 RNF208Q9H0X6 261 aa18.19■□□□□ 0.5
CPSF4-201ENST00000292476 C2orf40Q9H1Z8 148 aa18.19■□□□□ 0.5
CPSF4-201ENST00000292476 C11orf97A0A1B0GVM6 126 aaPredicted RBP18.18■□□□□ 0.5
CPSF4-201ENST00000292476 GTPBP10A4D1E9 387 aaKnown RBP18.18■□□□□ 0.5
CPSF4-201ENST00000292476 BTNL10A8MVZ5 291 aa18.18■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms