RNA–Protein interactions for RNA: ENST00000263121.11

SMARCB1-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SMARCB1, Length 1,690 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-201ENST00000263121 CXCL17Q6UXB2 119 aa24.89■■□□□ 1.58
SMARCB1-201ENST00000263121 C7orf31Q8N865 590 aa24.89■■□□□ 1.58
SMARCB1-201ENST00000263121 NLRP7Q8WX94 980 aa24.89■■□□□ 1.58
SMARCB1-201ENST00000263121 ADAMTS10Q9H324 1103 aa24.89■■□□□ 1.58
SMARCB1-201ENST00000263121 SIX2Q9NPC8 291 aa24.89■■□□□ 1.58
SMARCB1-201ENST00000263121 KCND1Q9NSA2 647 aa24.89■■□□□ 1.58
SMARCB1-201ENST00000263121 SPTLC3Q9NUV7 552 aa24.89■■□□□ 1.58
SMARCB1-201ENST00000263121 DDX20Q9UHI6 824 aaKnown RBP24.89■■□□□ 1.58
SMARCB1-201ENST00000263121 LRRIQ3A6PVS8 624 aaPredicted RBP24.88■■□□□ 1.57
SMARCB1-201ENST00000263121 B4GALT5O43286 388 aa24.88■■□□□ 1.57
SMARCB1-201ENST00000263121 FAM189A1O60320 539 aa24.88■■□□□ 1.57
SMARCB1-201ENST00000263121 MATR3P43243 847 aaKnown RBP eCLIP24.88■■□□□ 1.575e-9■■■■□ 20.1
SMARCB1-201ENST00000263121 ATF7IP2Q5U623 682 aa24.88■■□□□ 1.57
SMARCB1-201ENST00000263121 SLAIN1Q8ND83 568 aa24.88■■□□□ 1.57
SMARCB1-201ENST00000263121 PRIMPOLQ96LW4 560 aa24.88■■□□□ 1.57
SMARCB1-201ENST00000263121 FAM49AQ9H0Q0 323 aaPredicted RBP24.88■■□□□ 1.57
SMARCB1-201ENST00000263121 TREHO43280 583 aa24.88■■□□□ 1.57
SMARCB1-201ENST00000263121 GNAT1P11488 350 aa24.88■■□□□ 1.57
SMARCB1-201ENST00000263121 ACTN1P12814 892 aa24.88■■□□□ 1.57
SMARCB1-201ENST00000263121 HNRNPH3P31942 346 aaKnown RBP24.88■■□□□ 1.57
SMARCB1-201ENST00000263121 NOLC1Q14978 699 aaKnown RBP eCLIP24.88■■□□□ 1.57
SMARCB1-201ENST00000263121 PSMD6Q15008 389 aa24.88■■□□□ 1.57
SMARCB1-201ENST00000263121 KLHDC7AQ5VTJ3 777 aa24.88■■□□□ 1.57
SMARCB1-201ENST00000263121 E4F1Q66K89 784 aaPredicted RBP24.88■■□□□ 1.57
SMARCB1-201ENST00000263121 WDR59Q6PJI9 974 aa24.88■■□□□ 1.57
SMARCB1-201ENST00000263121 SRGAP1Q7Z6B7 1085 aa24.88■■□□□ 1.57
SMARCB1-201ENST00000263121 USP37Q86T82 979 aa24.88■■□□□ 1.57
SMARCB1-201ENST00000263121 TMTC1Q8IUR5 882 aa24.88■■□□□ 1.57
SMARCB1-201ENST00000263121 FBXL5Q9UKA1 691 aa24.88■■□□□ 1.57
SMARCB1-201ENST00000263121 TNFSF13BQ9Y275 285 aa24.88■■□□□ 1.57
SMARCB1-201ENST00000263121 CNTNAP2Q9UHC6 1331 aa24.87■■□□□ 1.57
SMARCB1-201ENST00000263121 GPR32O75388 356 aa24.87■■□□□ 1.57
SMARCB1-201ENST00000263121 GCLMP48507 274 aa24.87■■□□□ 1.57
SMARCB1-201ENST00000263121 ACOT2P49753 483 aa24.87■■□□□ 1.57
SMARCB1-201ENST00000263121 POLR2FP61218 127 aaKnown RBP24.87■■□□□ 1.57
SMARCB1-201ENST00000263121 ZNF200P98182 395 aaPredicted RBP24.87■■□□□ 1.57
SMARCB1-201ENST00000263121 TSR1Q2NL82 804 aaKnown RBP24.87■■□□□ 1.57
SMARCB1-201ENST00000263121 ZBTB41Q5SVQ8 909 aa24.87■■□□□ 1.57
SMARCB1-201ENST00000263121 PDXDC1Q6P996 788 aa24.87■■□□□ 1.57
SMARCB1-201ENST00000263121 TRIM65Q6PJ69 517 aa24.87■■□□□ 1.57
SMARCB1-201ENST00000263121 MPZL3Q6UWV2 235 aa24.87■■□□□ 1.57
SMARCB1-201ENST00000263121 CYP26C1Q6V0L0 522 aa24.87■■□□□ 1.57
SMARCB1-201ENST00000263121 CACNA2D4Q7Z3S7 1137 aa24.87■■□□□ 1.57
SMARCB1-201ENST00000263121 CCDC127Q96BQ5 260 aa24.87■■□□□ 1.57
SMARCB1-201ENST00000263121 SOWAHDA6NJG2 315 aa24.86■■□□□ 1.57
SMARCB1-201ENST00000263121 INHAP05111 366 aa24.86■■□□□ 1.57
SMARCB1-201ENST00000263121 GTF2H1P32780 548 aa24.86■■□□□ 1.57
SMARCB1-201ENST00000263121 CLDN10P78369 228 aa24.86■■□□□ 1.57
SMARCB1-201ENST00000263121 LMO3Q8TAP4 145 aa24.86■■□□□ 1.57
SMARCB1-201ENST00000263121 SCLT1Q96NL6 688 aa24.86■■□□□ 1.57
SMARCB1-201ENST00000263121 TCHPQ9BT92 498 aa24.86■■□□□ 1.57
SMARCB1-201ENST00000263121 TMEM117Q9H0C3 514 aa24.86■■□□□ 1.57
SMARCB1-201ENST00000263121 PLAGL2Q9UPG8 496 aa24.86■■□□□ 1.57
SMARCB1-201ENST00000263121 LRRC53A6NM62 1247 aa24.85■■□□□ 1.57
SMARCB1-201ENST00000263121 OGTO15294 1046 aa24.85■■□□□ 1.57
SMARCB1-201ENST00000263121 CSDE1O75534 798 aaKnown RBP24.85■■□□□ 1.57
SMARCB1-201ENST00000263121 ASGR1P07306 291 aa24.85■■□□□ 1.57
SMARCB1-201ENST00000263121 UCHL3P15374 230 aa24.85■■□□□ 1.57
SMARCB1-201ENST00000263121 MXI1P50539 228 aa24.85■■□□□ 1.57
SMARCB1-201ENST00000263121 MAP2K1Q02750 393 aaPredicted RBP24.85■■□□□ 1.57
SMARCB1-201ENST00000263121 KCNA10Q16322 511 aa24.85■■□□□ 1.57
SMARCB1-201ENST00000263121 KIZQ2M2Z5 673 aa24.85■■□□□ 1.57
SMARCB1-201ENST00000263121 NBPF20Q3BBV1 942 aa24.85■■□□□ 1.57
SMARCB1-201ENST00000263121 EPC2Q52LR7 807 aa24.85■■□□□ 1.57
SMARCB1-201ENST00000263121 EEF1DP3Q658K8 133 aa24.85■■□□□ 1.57
SMARCB1-201ENST00000263121 RAD9BQ6WBX8 426 aa24.85■■□□□ 1.57
SMARCB1-201ENST00000263121 RRAGAQ7L523 313 aa24.85■■□□□ 1.57
SMARCB1-201ENST00000263121 ZBTB33Q86T24 672 aa24.85■■□□□ 1.57
SMARCB1-201ENST00000263121 INTS2Q9H0H0 1204 aaKnown RBP24.85■■□□□ 1.57
SMARCB1-201ENST00000263121 TMEM8AQ9HCN3 771 aa24.85■■□□□ 1.57
SMARCB1-201ENST00000263121 NLRC4Q9NPP4 1024 aa24.85■■□□□ 1.57
SMARCB1-201ENST00000263121 RBAKQ9NYW8 714 aaPredicted RBP24.85■■□□□ 1.57
SMARCB1-201ENST00000263121 GTF2IRD1Q9UHL9 959 aa24.85■■□□□ 1.57
SMARCB1-201ENST00000263121 CDK17Q00537 523 aa24.85■■□□□ 1.57
SMARCB1-201ENST00000263121 TRIP12Q14669 1992 aaPredicted RBP24.85■■□□□ 1.57
SMARCB1-201ENST00000263121 MTF1Q14872 753 aa24.85■■□□□ 1.57
SMARCB1-201ENST00000263121 CCAR2Q8N163 923 aaKnown RBP24.85■■□□□ 1.57
SMARCB1-201ENST00000263121 EHBP1Q8NDI1 1231 aa24.85■■□□□ 1.57
SMARCB1-201ENST00000263121 DNAJB3Q8WWF6 145 aa24.85■■□□□ 1.57
SMARCB1-201ENST00000263121 POP1Q99575 1024 aaKnown RBP24.85■■□□□ 1.57
SMARCB1-201ENST00000263121 NUCKS1Q9H1E3 243 aaKnown RBP24.85■■□□□ 1.57
SMARCB1-201ENST00000263121 ZNHIT6Q9NWK9 470 aaKnown RBP24.85■■□□□ 1.57
SMARCB1-201ENST00000263121 HARSP12081 509 aaKnown RBP24.84■■□□□ 1.57
SMARCB1-201ENST00000263121 GRK4P32298 578 aa24.84■■□□□ 1.57
SMARCB1-201ENST00000263121 WNT7BP56706 349 aa24.84■■□□□ 1.57
SMARCB1-201ENST00000263121 TMEM62Q0P6H9 643 aa24.84■■□□□ 1.57
SMARCB1-201ENST00000263121 CETN1Q12798 172 aa24.84■■□□□ 1.57
SMARCB1-201ENST00000263121 ZNF568Q3ZCX4 644 aa24.84■■□□□ 1.57
SMARCB1-201ENST00000263121 PCSK9Q8NBP7 692 aaKnown RBP24.84■■□□□ 1.57
SMARCB1-201ENST00000263121 SYN2Q92777 582 aaPredicted RBP24.84■■□□□ 1.57
SMARCB1-201ENST00000263121 CHP1Q99653 195 aa24.84■■□□□ 1.57
SMARCB1-201ENST00000263121 TOPORSQ9NS56 1045 aaPredicted RBP24.84■■□□□ 1.57
SMARCB1-201ENST00000263121 TSKSQ9UJT2 592 aa24.84■■□□□ 1.57
SMARCB1-201ENST00000263121 COQ4Q9Y3A0 265 aa24.84■■□□□ 1.57
SMARCB1-201ENST00000263121 FHOD1Q9Y613 1164 aa24.84■■□□□ 1.57
SMARCB1-201ENST00000263121 HTTP42858 3142 aa24.83■■□□□ 1.57
SMARCB1-201ENST00000263121 PCNTO95613 3336 aa24.83■■□□□ 1.57
SMARCB1-201ENST00000263121 TSPAN1O60635 241 aa24.83■■□□□ 1.57
SMARCB1-201ENST00000263121 KRT39Q6A163 491 aa24.83■■□□□ 1.57
SMARCB1-201ENST00000263121 SESTD1Q86VW0 696 aa24.83■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms