RNA–Protein interactions for RNA: ENST00000637823.1

CLN6-223, Transcript of CLN6, transmembrane ER protein, human

TSL 5

Gene CLN6, Length 717 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN6-223	ENST00000637823	PPP1R13L	Q8WUF5	828 aa		12.84	□□□□□ -0.35
CLN6-223	ENST00000637823	VTI1A	Q96AJ9	217 aa		12.84	□□□□□ -0.35
CLN6-223	ENST00000637823	PRIMPOL	Q96LW4	560 aa		12.84	□□□□□ -0.35
CLN6-223	ENST00000637823	NUP58	Q9BVL2	599 aa		12.84	□□□□□ -0.35
CLN6-223	ENST00000637823	GCOM2	Q9BZD3	368 aa	Predicted RBP	12.84	□□□□□ -0.35
CLN6-223	ENST00000637823	XRN2	Q9H0D6	950 aa	Known RBP eCLIP	12.84	□□□□□ -0.35	4e-8	■■■■□ 25.2
CLN6-223	ENST00000637823	FAM49A	Q9H0Q0	323 aa	Predicted RBP	12.84	□□□□□ -0.35
CLN6-223	ENST00000637823	ADAMTS10	Q9H324	1103 aa		12.84	□□□□□ -0.35
CLN6-223	ENST00000637823	MINDY3	Q9H8M7	445 aa		12.84	□□□□□ -0.35
CLN6-223	ENST00000637823	AGO2	Q9UKV8	859 aa	Known RBP	12.84	□□□□□ -0.35
CLN6-223	ENST00000637823	CLDN3	O15551	220 aa		12.83	□□□□□ -0.36
CLN6-223	ENST00000637823	EXTL3	O43909	919 aa		12.83	□□□□□ -0.36
CLN6-223	ENST00000637823	GPR32	O75388	356 aa		12.83	□□□□□ -0.36
CLN6-223	ENST00000637823	RPLP2	P05387	115 aa	Known RBP	12.83	□□□□□ -0.36
CLN6-223	ENST00000637823	TPM1	P09493	284 aa		12.83	□□□□□ -0.36
CLN6-223	ENST00000637823	MATR3	P43243	847 aa	Known RBP eCLIP	12.83	□□□□□ -0.36
CLN6-223	ENST00000637823	TRIM14	Q14142	442 aa		12.83	□□□□□ -0.36
CLN6-223	ENST00000637823	PCBP1	Q15365	356 aa	Known RBP eCLIP	12.83	□□□□□ -0.36
CLN6-223	ENST00000637823	SNRNP35	Q16560	246 aa	Known RBP	12.83	□□□□□ -0.36
CLN6-223	ENST00000637823	PTPN21	Q16825	1174 aa		12.83	□□□□□ -0.36
CLN6-223	ENST00000637823	SLC9C1	Q4G0N8	1177 aa		12.83	□□□□□ -0.36
CLN6-223	ENST00000637823	TCERG1L	Q5VWI1	586 aa		12.83	□□□□□ -0.36
CLN6-223	ENST00000637823	RSPH3	Q86UC2	560 aa		12.83	□□□□□ -0.36
CLN6-223	ENST00000637823	TMC2	Q8TDI7	906 aa		12.83	□□□□□ -0.36
CLN6-223	ENST00000637823	DNAJB3	Q8WWF6	145 aa		12.83	□□□□□ -0.36
CLN6-223	ENST00000637823	SLC35C1	Q96A29	364 aa		12.83	□□□□□ -0.36
CLN6-223	ENST00000637823	IQCD	Q96DY2	449 aa		12.83	□□□□□ -0.36
CLN6-223	ENST00000637823	ZNF668	Q96K58	619 aa	Predicted RBP	12.83	□□□□□ -0.36
CLN6-223	ENST00000637823	ZBTB45	Q96K62	511 aa	Predicted RBP	12.83	□□□□□ -0.36
CLN6-223	ENST00000637823	MFSD14A	Q96MC6	490 aa		12.83	□□□□□ -0.36
CLN6-223	ENST00000637823	SCLT1	Q96NL6	688 aa		12.83	□□□□□ -0.36
CLN6-223	ENST00000637823	MSTO1	Q9BUK6	570 aa		12.83	□□□□□ -0.36
CLN6-223	ENST00000637823	USP20	Q9Y2K6	914 aa		12.83	□□□□□ -0.36
CLN6-223	ENST00000637823	GOLGA8IP	A6NC78	632 aa		12.82	□□□□□ -0.36
CLN6-223	ENST00000637823	ZNF233	A6NK53	670 aa		12.82	□□□□□ -0.36
CLN6-223	ENST00000637823	GOLGA8J	A6NMD2	632 aa		12.82	□□□□□ -0.36
CLN6-223	ENST00000637823	STX10	O60499	249 aa		12.82	□□□□□ -0.36
CLN6-223	ENST00000637823	EDN1	P05305	212 aa		12.82	□□□□□ -0.36
CLN6-223	ENST00000637823	IQCF3	P0C7M6	154 aa		12.82	□□□□□ -0.36
CLN6-223	ENST00000637823	PROZ	P22891	400 aa		12.82	□□□□□ -0.36
CLN6-223	ENST00000637823	VAMP7	P51809	220 aa		12.82	□□□□□ -0.36
CLN6-223	ENST00000637823	MCL1	Q07820	350 aa		12.82	□□□□□ -0.36
CLN6-223	ENST00000637823	BFSP1	Q12934	665 aa		12.82	□□□□□ -0.36
CLN6-223	ENST00000637823	ITGA7	Q13683	1181 aa		12.82	□□□□□ -0.36
CLN6-223	ENST00000637823	SYCP1	Q15431	976 aa		12.82	□□□□□ -0.36
CLN6-223	ENST00000637823	KIZ	Q2M2Z5	673 aa		12.82	□□□□□ -0.36
CLN6-223	ENST00000637823	DCAF17	Q5H9S7	520 aa	Predicted RBP	12.82	□□□□□ -0.36
CLN6-223	ENST00000637823	FAM47C	Q5HY64	1035 aa		12.82	□□□□□ -0.36
CLN6-223	ENST00000637823	ATF7IP2	Q5U623	682 aa		12.82	□□□□□ -0.36
CLN6-223	ENST00000637823	GDF6	Q6KF10	455 aa	Predicted RBP	12.82	□□□□□ -0.36
CLN6-223	ENST00000637823	USP37	Q86T82	979 aa		12.82	□□□□□ -0.36
CLN6-223	ENST00000637823	CCDC150	Q8NCX0	1101 aa		12.82	□□□□□ -0.36
CLN6-223	ENST00000637823	ZSWIM2	Q8NEG5	633 aa		12.82	□□□□□ -0.36
CLN6-223	ENST00000637823	SAAL1	Q96ER3	474 aa		12.82	□□□□□ -0.36
CLN6-223	ENST00000637823	GLT1D1	Q96MS3	346 aa		12.82	□□□□□ -0.36
CLN6-223	ENST00000637823	PPP1R16B	Q96T49	567 aa		12.82	□□□□□ -0.36
CLN6-223	ENST00000637823	FAM213A	Q9BRX8	229 aa		12.82	□□□□□ -0.36
CLN6-223	ENST00000637823	TCHP	Q9BT92	498 aa		12.82	□□□□□ -0.36
CLN6-223	ENST00000637823	SEZ6L	Q9BYH1	1024 aa		12.82	□□□□□ -0.36
CLN6-223	ENST00000637823	HAPLN2	Q9GZV7	340 aa		12.82	□□□□□ -0.36
CLN6-223	ENST00000637823	UNC93B1	Q9H1C4	597 aa		12.82	□□□□□ -0.36
CLN6-223	ENST00000637823	PTPRH	Q9HD43	1115 aa		12.82	□□□□□ -0.36
CLN6-223	ENST00000637823	TNFSF13B	Q9Y275	285 aa		12.82	□□□□□ -0.36
CLN6-223	ENST00000637823	SIK3	Q9Y2K2	1263 aa		12.82	□□□□□ -0.36
CLN6-223	ENST00000637823	GRIN2D	O15399	1336 aa		12.82	□□□□□ -0.36
CLN6-223	ENST00000637823	CIT	O14578	2027 aa		12.81	□□□□□ -0.36
CLN6-223	ENST00000637823	ANK1	P16157	1881 aa		12.81	□□□□□ -0.36
CLN6-223	ENST00000637823	GTPBP10	A4D1E9	387 aa	Known RBP	12.81	□□□□□ -0.36
CLN6-223	ENST00000637823	TTLL13P	A6NNM8	815 aa		12.81	□□□□□ -0.36
CLN6-223	ENST00000637823	KBTBD13	C9JR72	458 aa		12.81	□□□□□ -0.36
CLN6-223	ENST00000637823	AKR1B15	C9JRZ8	316 aa	Predicted RBP	12.81	□□□□□ -0.36
CLN6-223	ENST00000637823	OGT	O15294	1046 aa		12.81	□□□□□ -0.36
CLN6-223	ENST00000637823	ADRB2	P07550	413 aa		12.81	□□□□□ -0.36
CLN6-223	ENST00000637823	DARS	P14868	501 aa	Known RBP	12.81	□□□□□ -0.36
CLN6-223	ENST00000637823	CRYBB1	P53674	252 aa	Predicted RBP	12.81	□□□□□ -0.36
CLN6-223	ENST00000637823	CYP24A1	Q07973	514 aa		12.81	□□□□□ -0.36
CLN6-223	ENST00000637823	RBL2	Q08999	1139 aa		12.81	□□□□□ -0.36
CLN6-223	ENST00000637823	NCBP1	Q09161	790 aa	Known RBP	12.81	□□□□□ -0.36
CLN6-223	ENST00000637823	TMEM62	Q0P6H9	643 aa		12.81	□□□□□ -0.36
CLN6-223	ENST00000637823	AMHR2	Q16671	573 aa		12.81	□□□□□ -0.36
CLN6-223	ENST00000637823	TMEM132A	Q24JP5	1023 aa		12.81	□□□□□ -0.36
CLN6-223	ENST00000637823	FIGN	Q5HY92	759 aa		12.81	□□□□□ -0.36
CLN6-223	ENST00000637823	MPZL3	Q6UWV2	235 aa		12.81	□□□□□ -0.36
CLN6-223	ENST00000637823	CTU1	Q7Z7A3	348 aa	Known RBP	12.81	□□□□□ -0.36
CLN6-223	ENST00000637823	RPAIN	Q86UA6	219 aa		12.81	□□□□□ -0.36
CLN6-223	ENST00000637823	SERINC5	Q86VE9	423 aa		12.81	□□□□□ -0.36
CLN6-223	ENST00000637823	CBWD2	Q8IUF1	395 aa		12.81	□□□□□ -0.36
CLN6-223	ENST00000637823	LRRC8A	Q8IWT6	810 aa		12.81	□□□□□ -0.36
CLN6-223	ENST00000637823	PCMTD1	Q96MG8	357 aa	Predicted RBP	12.81	□□□□□ -0.36
CLN6-223	ENST00000637823	CDHR5	Q9HBB8	845 aa		12.81	□□□□□ -0.36
CLN6-223	ENST00000637823	PAK6	Q9NQU5	681 aa	Predicted RBP	12.81	□□□□□ -0.36
CLN6-223	ENST00000637823	ANKFY1	Q9P2R3	1169 aa		12.81	□□□□□ -0.36
CLN6-223	ENST00000637823	PHF24	Q9UPV7	400 aa		12.81	□□□□□ -0.36
CLN6-223	ENST00000637823	CNTNAP2	Q9UHC6	1331 aa		12.81	□□□□□ -0.36
CLN6-223	ENST00000637823	TRIP11	Q15643	1979 aa		12.8	□□□□□ -0.36
CLN6-223	ENST00000637823		M0QZ92	97 aa		12.8	□□□□□ -0.36
CLN6-223	ENST00000637823	ABLIM1	O14639	778 aa		12.8	□□□□□ -0.36
CLN6-223	ENST00000637823	PMM2	O15305	246 aa		12.8	□□□□□ -0.36
CLN6-223	ENST00000637823	P4HA2	O15460	535 aa		12.8	□□□□□ -0.36
CLN6-223	ENST00000637823	B4GALT5	O43286	388 aa		12.8	□□□□□ -0.36

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