RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 KCNMB3Q9NPA1 279 aa21.66■■□□□ 1.06
CLN3-262ENST00000637699 UBN1Q9NPG3 1134 aa21.66■■□□□ 1.06
CLN3-262ENST00000637699 SSX2IPQ9Y2D8 614 aa21.66■■□□□ 1.06
CLN3-262ENST00000637699 INPPL1O15357 1258 aa21.65■■□□□ 1.06
CLN3-262ENST00000637699 RFPL2O75678 378 aa21.65■■□□□ 1.06
CLN3-262ENST00000637699 ERLIN2O94905 339 aa21.65■■□□□ 1.06
CLN3-262ENST00000637699 SPATA31D3P0C874 917 aa21.65■■□□□ 1.06
CLN3-262ENST00000637699 YWHABP31946 246 aaKnown RBP21.65■■□□□ 1.06
CLN3-262ENST00000637699 GLUD2P49448 558 aa21.65■■□□□ 1.06
CLN3-262ENST00000637699 FOXK2Q01167 660 aa21.65■■□□□ 1.06
CLN3-262ENST00000637699 EMC2Q15006 297 aa21.65■■□□□ 1.06
CLN3-262ENST00000637699 XKR9Q5GH70 373 aa21.65■■□□□ 1.06
CLN3-262ENST00000637699 SPATA31D4Q6ZUB0 917 aa21.65■■□□□ 1.06
CLN3-262ENST00000637699 FERMT3Q86UX7 667 aa21.65■■□□□ 1.06
CLN3-262ENST00000637699 CNNM3Q8NE01 707 aa21.65■■□□□ 1.06
CLN3-262ENST00000637699 CMASQ8NFW8 434 aaPredicted RBP21.65■■□□□ 1.06
CLN3-262ENST00000637699 TCP11Q8WWU5 503 aa21.65■■□□□ 1.06
CLN3-262ENST00000637699 ZNF274Q96GC6 653 aaPredicted RBP21.65■■□□□ 1.06
CLN3-262ENST00000637699 GAD1Q99259 594 aa21.65■■□□□ 1.06
CLN3-262ENST00000637699 LXNQ9BS40 222 aa21.65■■□□□ 1.06
CLN3-262ENST00000637699 EIF2AQ9BY44 585 aaKnown RBP21.65■■□□□ 1.06
CLN3-262ENST00000637699 ZSWIM6Q9HCJ5 1215 aa21.65■■□□□ 1.06
CLN3-262ENST00000637699 WDR6Q9NNW5 1121 aaKnown RBP21.65■■□□□ 1.06
CLN3-262ENST00000637699 RGL1Q9NZL6 768 aa21.65■■□□□ 1.06
CLN3-262ENST00000637699 PPME1Q9Y570 386 aa21.65■■□□□ 1.06
CLN3-262ENST00000637699 IPPQ9Y573 584 aa21.65■■□□□ 1.06
CLN3-262ENST00000637699 CCDC194A0A1B0GVG4 234 aa21.64■■□□□ 1.05
CLN3-262ENST00000637699 ARL5CA6NH57 179 aa21.64■■□□□ 1.05
CLN3-262ENST00000637699 F8W810 466 aa21.64■■□□□ 1.05
CLN3-262ENST00000637699 ZBTB39O15060 712 aa21.64■■□□□ 1.05
CLN3-262ENST00000637699 ASAP2O43150 1006 aa21.64■■□□□ 1.05
CLN3-262ENST00000637699 MARCH6O60337 910 aa21.64■■□□□ 1.05
CLN3-262ENST00000637699 REC8O95072 547 aa21.64■■□□□ 1.05
CLN3-262ENST00000637699 GLUD1P00367 558 aa21.64■■□□□ 1.05
CLN3-262ENST00000637699 MLH1P40692 756 aa21.64■■□□□ 1.05
CLN3-262ENST00000637699 EPHA7Q15375 998 aa21.64■■□□□ 1.05
CLN3-262ENST00000637699 KIAA0319Q5VV43 1072 aa21.64■■□□□ 1.05
CLN3-262ENST00000637699 ELMSAN1Q6PJG2 1045 aa21.64■■□□□ 1.05
CLN3-262ENST00000637699 CPLX2Q6PUV4 134 aaKnown RBP21.64■■□□□ 1.05
CLN3-262ENST00000637699 OTUD6AQ7L8S5 288 aa21.64■■□□□ 1.05
CLN3-262ENST00000637699 NEK8Q86SG6 692 aa21.64■■□□□ 1.05
CLN3-262ENST00000637699 C4orf19Q8IY42 314 aa21.64■■□□□ 1.05
CLN3-262ENST00000637699 CPB2Q96IY4 423 aa21.64■■□□□ 1.05
CLN3-262ENST00000637699 MIOSQ9NXC5 875 aa21.64■■□□□ 1.05
CLN3-262ENST00000637699 DPP7Q9UHL4 492 aa21.64■■□□□ 1.05
CLN3-262ENST00000637699 HES2Q9Y543 173 aa21.64■■□□□ 1.05
CLN3-262ENST00000637699 CYP46A1Q9Y6A2 500 aa21.64■■□□□ 1.05
CLN3-262ENST00000637699 CLUHO75153 1309 aa21.63■■□□□ 1.05
CLN3-262ENST00000637699 GVINP1Q7Z2Y8 2422 aa21.63■■□□□ 1.05
CLN3-262ENST00000637699 CCNT1O60563 726 aaKnown RBP21.63■■□□□ 1.05
CLN3-262ENST00000637699 TSPAN1O60635 241 aa21.63■■□□□ 1.05
CLN3-262ENST00000637699 SCNN1GP51170 649 aa21.63■■□□□ 1.05
CLN3-262ENST00000637699 CTTNQ14247 550 aaKnown RBP21.63■■□□□ 1.05
CLN3-262ENST00000637699 NCAPH2Q6IBW4 605 aa21.63■■□□□ 1.05
CLN3-262ENST00000637699 PPP4R3AQ6IN85 833 aa21.63■■□□□ 1.05
CLN3-262ENST00000637699 PALB2Q86YC2 1186 aa21.63■■□□□ 1.05
CLN3-262ENST00000637699 FAM177A1Q8N128 213 aaPredicted RBP21.63■■□□□ 1.05
CLN3-262ENST00000637699 SMG7Q92540 1137 aaKnown RBP21.63■■□□□ 1.05
CLN3-262ENST00000637699 STAMQ92783 540 aa21.63■■□□□ 1.05
CLN3-262ENST00000637699 HAS1Q92839 578 aa21.63■■□□□ 1.05
CLN3-262ENST00000637699 DYDC2Q96IM9 177 aa21.63■■□□□ 1.05
CLN3-262ENST00000637699 B3GALT6Q96L58 329 aa21.63■■□□□ 1.05
CLN3-262ENST00000637699 ZFP42Q96MM3 310 aa21.63■■□□□ 1.05
CLN3-262ENST00000637699 MYADMQ96S97 322 aa21.63■■□□□ 1.05
CLN3-262ENST00000637699 APOL6Q9BWW8 343 aa21.63■■□□□ 1.05
CLN3-262ENST00000637699 KRBA1A5PL33 1030 aa21.62■■□□□ 1.05
CLN3-262ENST00000637699 GAS2O43903 313 aaKnown RBP21.62■■□□□ 1.05
CLN3-262ENST00000637699 GCFC2P16383 781 aaKnown RBP21.62■■□□□ 1.05
CLN3-262ENST00000637699 RFX1P22670 979 aa21.62■■□□□ 1.05
CLN3-262ENST00000637699 CYP4A11Q02928 519 aa21.62■■□□□ 1.05
CLN3-262ENST00000637699 NCBP1Q09161 790 aaKnown RBP21.62■■□□□ 1.05
CLN3-262ENST00000637699 NOTUMQ6P988 496 aa21.62■■□□□ 1.05
CLN3-262ENST00000637699 CYP26C1Q6V0L0 522 aa21.62■■□□□ 1.05
CLN3-262ENST00000637699 RNF168Q8IYW5 571 aaPredicted RBP21.62■■□□□ 1.05
CLN3-262ENST00000637699 SLC44A3Q8N4M1 653 aa21.62■■□□□ 1.05
CLN3-262ENST00000637699 MTRQ99707 1265 aa21.62■■□□□ 1.05
CLN3-262ENST00000637699 PHF20Q9BVI0 1012 aa21.62■■□□□ 1.05
CLN3-262ENST00000637699 PIDD1Q9HB75 910 aa21.62■■□□□ 1.05
CLN3-262ENST00000637699 RXFP1Q9HBX9 757 aa21.62■■□□□ 1.05
CLN3-262ENST00000637699 WNT16Q9UBV4 365 aa21.62■■□□□ 1.05
CLN3-262ENST00000637699 CA14Q9ULX7 337 aa21.62■■□□□ 1.05
CLN3-262ENST00000637699 INO80B-WBP1J3KQ70 363 aa21.61■■□□□ 1.05
CLN3-262ENST00000637699 NR1I2O75469 434 aa21.61■■□□□ 1.05
CLN3-262ENST00000637699 EFEMP2O95967 443 aa21.61■■□□□ 1.05
CLN3-262ENST00000637699 PTENP60484 403 aa21.61■■□□□ 1.05
CLN3-262ENST00000637699 DSG1Q02413 1049 aa21.61■■□□□ 1.05
CLN3-262ENST00000637699 DSC1Q08554 894 aa21.61■■□□□ 1.05
CLN3-262ENST00000637699 PIK3AP1Q6ZUJ8 805 aa21.61■■□□□ 1.05
CLN3-262ENST00000637699 TPH2Q8IWU9 490 aa21.61■■□□□ 1.05
CLN3-262ENST00000637699 ZNF707Q96C28 371 aaPredicted RBP21.61■■□□□ 1.05
CLN3-262ENST00000637699 COLEC11Q9BWP8 271 aa21.61■■□□□ 1.05
CLN3-262ENST00000637699 CSRNP2Q9H175 543 aa21.61■■□□□ 1.05
CLN3-262ENST00000637699 ZSWIM4Q9H7M6 989 aa21.61■■□□□ 1.05
CLN3-262ENST00000637699 GJB4Q9NTQ9 266 aa21.61■■□□□ 1.05
CLN3-262ENST00000637699 EPS15L1Q9UBC2 864 aa21.61■■□□□ 1.05
CLN3-262ENST00000637699 DCHS1Q96JQ0 3298 aa21.61■■□□□ 1.05
CLN3-262ENST00000637699 DTNBO60941 627 aa21.6■■□□□ 1.05
CLN3-262ENST00000637699 AXLP30530 894 aa21.6■■□□□ 1.05
CLN3-262ENST00000637699 ID4P47928 161 aa21.6■■□□□ 1.05
CLN3-262ENST00000637699 MXD4Q14582 209 aaPredicted RBP21.6■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms