RNA–Protein interactions for RNA: ENST00000637110.1

CLN3-257, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 565 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-257ENST00000637110 ASAP3Q8TDY4 903 aa12.89□□□□□ -0.35
CLN3-257ENST00000637110 SNX29Q8TEQ0 813 aa12.89□□□□□ -0.35
CLN3-257ENST00000637110 ZNF558Q96NG5 402 aa12.89□□□□□ -0.35
CLN3-257ENST00000637110 MRPL9Q9BYD2 267 aaKnown RBP12.89□□□□□ -0.35
CLN3-257ENST00000637110 CWH43Q9H720 699 aa12.89□□□□□ -0.35
CLN3-257ENST00000637110 MINDY3Q9H8M7 445 aa12.89□□□□□ -0.35
CLN3-257ENST00000637110 GPRC5CQ9NQ84 441 aa12.89□□□□□ -0.35
CLN3-257ENST00000637110 DBR1Q9UK59 544 aaKnown RBP12.89□□□□□ -0.35
CLN3-257ENST00000637110 KIAA1024Q9UPX6 916 aa12.89□□□□□ -0.35
CLN3-257ENST00000637110 PCDHB2Q9Y5E7 798 aa12.89□□□□□ -0.35
CLN3-257ENST00000637110 EP300Q09472 2414 aaPredicted RBP12.89□□□□□ -0.35
CLN3-257ENST00000637110 FNDC1Q4ZHG4 1894 aaPredicted RBP12.89□□□□□ -0.35
CLN3-257ENST00000637110 ZNF292O60281 2723 aa12.89□□□□□ -0.35
CLN3-257ENST00000637110 TPRP12270 2363 aaKnown RBP12.88□□□□□ -0.35
CLN3-257ENST00000637110 VPS37CA5D8V6 355 aaPredicted RBP12.88□□□□□ -0.35
CLN3-257ENST00000637110 LAD1O00515 517 aa12.88□□□□□ -0.35
CLN3-257ENST00000637110 LIG1P18858 919 aa12.88□□□□□ -0.35
CLN3-257ENST00000637110 GLRA2P23416 452 aa12.88□□□□□ -0.35
CLN3-257ENST00000637110 CA8P35219 290 aa12.88□□□□□ -0.35
CLN3-257ENST00000637110 ARL2P36404 184 aa12.88□□□□□ -0.35
CLN3-257ENST00000637110 PBX3P40426 434 aa12.88□□□□□ -0.35
CLN3-257ENST00000637110 CLCN5P51795 746 aa12.88□□□□□ -0.35
CLN3-257ENST00000637110 PTENP60484 403 aa12.88□□□□□ -0.35
CLN3-257ENST00000637110 KRT17Q04695 432 aa12.88□□□□□ -0.35
CLN3-257ENST00000637110 CAPSQ13938 189 aa12.88□□□□□ -0.35
CLN3-257ENST00000637110 PDIA5Q14554 519 aa12.88□□□□□ -0.35
CLN3-257ENST00000637110 PUM1Q14671 1186 aaKnown RBP eCLIP12.88□□□□□ -0.35
CLN3-257ENST00000637110 PDE12Q6L8Q7 609 aaKnown RBP12.88□□□□□ -0.35
CLN3-257ENST00000637110 KCNT2Q6UVM3 1135 aa12.88□□□□□ -0.35
CLN3-257ENST00000637110 LRRC55Q6ZSA7 311 aa12.88□□□□□ -0.35
CLN3-257ENST00000637110 ZNF598Q86UK7 904 aaKnown RBP12.88□□□□□ -0.35
CLN3-257ENST00000637110 URGCPQ8TCY9 931 aa12.88□□□□□ -0.35
CLN3-257ENST00000637110 CPB2Q96IY4 423 aa12.88□□□□□ -0.35
CLN3-257ENST00000637110 TRIM6Q9C030 488 aaPredicted RBP12.88□□□□□ -0.35
CLN3-257ENST00000637110 GBP3Q9H0R5 595 aa12.88□□□□□ -0.35
CLN3-257ENST00000637110 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.88□□□□□ -0.35
CLN3-257ENST00000637110 TSHZ2Q9NRE2 1034 aa12.88□□□□□ -0.35
CLN3-257ENST00000637110 DDX19AQ9NUU7 478 aaKnown RBP12.88□□□□□ -0.35
CLN3-257ENST00000637110 RNF19AQ9NV58 838 aa12.88□□□□□ -0.35
CLN3-257ENST00000637110 PLXNA4Q9HCM2 1894 aa12.88□□□□□ -0.35
CLN3-257ENST00000637110 ARID2Q68CP9 1835 aa12.88□□□□□ -0.35
CLN3-257ENST00000637110 KRT37O76014 449 aa12.87□□□□□ -0.35
CLN3-257ENST00000637110 ALDH7A1P49419 539 aaKnown RBP12.87□□□□□ -0.35
CLN3-257ENST00000637110 DUSP6Q16828 381 aa12.87□□□□□ -0.35
CLN3-257ENST00000637110 ZBTB8OSQ8IWT0 167 aa12.87□□□□□ -0.35
CLN3-257ENST00000637110 DEPTORQ8TB45 409 aa12.87□□□□□ -0.35
CLN3-257ENST00000637110 KCNG4Q8TDN1 519 aa12.87□□□□□ -0.35
CLN3-257ENST00000637110 RMDN1Q96DB5 314 aa12.87□□□□□ -0.35
CLN3-257ENST00000637110 FAM193BQ96PV7 902 aaPredicted RBP12.87□□□□□ -0.35
CLN3-257ENST00000637110 TRAIPQ9BWF2 469 aa12.87□□□□□ -0.35
CLN3-257ENST00000637110 APOL6Q9BWW8 343 aa12.87□□□□□ -0.35
CLN3-257ENST00000637110 BHMT2Q9H2M3 363 aa12.87□□□□□ -0.35
CLN3-257ENST00000637110 SEMA4AQ9H3S1 761 aa12.87□□□□□ -0.35
CLN3-257ENST00000637110 ENTPD7Q9NQZ7 604 aa12.87□□□□□ -0.35
CLN3-257ENST00000637110 FOXD4L1Q9NU39 408 aa12.87□□□□□ -0.35
CLN3-257ENST00000637110 SPG21Q9NZD8 308 aa12.87□□□□□ -0.35
CLN3-257ENST00000637110 DNM3Q9UQ16 869 aa12.87□□□□□ -0.35
CLN3-257ENST00000637110 PCDHGC5Q9Y5F6 944 aa12.87□□□□□ -0.35
CLN3-257ENST00000637110 GTF3C3Q9Y5Q9 886 aa12.87□□□□□ -0.35
CLN3-257ENST00000637110 NCOR2Q9Y618 2525 aa12.86□□□□□ -0.35
CLN3-257ENST00000637110 VWA3AA6NCI4 1184 aa12.86□□□□□ -0.35
CLN3-257ENST00000637110 PP2D1A8MPX8 630 aa12.86□□□□□ -0.35
CLN3-257ENST00000637110 NT5C1B-RDH14C9J2C7 533 aa12.86□□□□□ -0.35
CLN3-257ENST00000637110 PER2O15055 1255 aa12.86□□□□□ -0.35
CLN3-257ENST00000637110 TSPAN1O60635 241 aa12.86□□□□□ -0.35
CLN3-257ENST00000637110 ZNF623O75123 536 aa12.86□□□□□ -0.35
CLN3-257ENST00000637110 ZC3H11AO75152 810 aaKnown RBP eCLIP12.86□□□□□ -0.35
CLN3-257ENST00000637110 BRD1O95696 1058 aa12.86□□□□□ -0.35
CLN3-257ENST00000637110 ITGA4P13612 1032 aa12.86□□□□□ -0.35
CLN3-257ENST00000637110 HOXB8P17481 243 aaPredicted RBP12.86□□□□□ -0.35
CLN3-257ENST00000637110 CYP11B2P19099 503 aa12.86□□□□□ -0.35
CLN3-257ENST00000637110 MUTP22033 750 aa12.86□□□□□ -0.35
CLN3-257ENST00000637110 SP100P23497 879 aaPredicted RBP12.86□□□□□ -0.35
CLN3-257ENST00000637110 CDC25AP30304 524 aa12.86□□□□□ -0.35
CLN3-257ENST00000637110 AXLP30530 894 aa12.86□□□□□ -0.35
CLN3-257ENST00000637110 PPM1AP35813 382 aa12.86□□□□□ -0.35
CLN3-257ENST00000637110 PRPHP41219 470 aa12.86□□□□□ -0.35
CLN3-257ENST00000637110 MBTD1Q05BQ5 628 aa12.86□□□□□ -0.35
CLN3-257ENST00000637110 PCBP1Q15365 356 aaKnown RBP eCLIP12.86□□□□□ -0.35
CLN3-257ENST00000637110 ECM1Q16610 540 aa12.86□□□□□ -0.35
CLN3-257ENST00000637110 NOMO2Q5JPE7 1267 aa12.86□□□□□ -0.35
CLN3-257ENST00000637110 NOTUMQ6P988 496 aa12.86□□□□□ -0.35
CLN3-257ENST00000637110 TMEM184AQ6ZMB5 413 aa12.86□□□□□ -0.35
CLN3-257ENST00000637110 HACE1Q8IYU2 909 aa12.86□□□□□ -0.35
CLN3-257ENST00000637110 CNNM3Q8NE01 707 aa12.86□□□□□ -0.35
CLN3-257ENST00000637110 MRPS27Q92552 414 aaKnown RBP12.86□□□□□ -0.35
CLN3-257ENST00000637110 CDK5RAP3Q96JB5 506 aa12.86□□□□□ -0.35
CLN3-257ENST00000637110 IFT74Q96LB3 600 aa12.86□□□□□ -0.35
CLN3-257ENST00000637110 RSAD1Q9HA92 442 aa12.86□□□□□ -0.35
CLN3-257ENST00000637110 POLD4Q9HCU8 107 aa12.86□□□□□ -0.35
CLN3-257ENST00000637110 DMXL1Q9Y485 3027 aa12.86□□□□□ -0.35
CLN3-257ENST00000637110 WDR87Q6ZQQ6 2873 aa12.86□□□□□ -0.35
CLN3-257ENST00000637110 DNAH14Q0VDD8 3507 aa12.85□□□□□ -0.35
CLN3-257ENST00000637110 CACNA1GO43497 2377 aa12.85□□□□□ -0.35
CLN3-257ENST00000637110 MEIS3P2A8K0S8 358 aa12.85□□□□□ -0.35
CLN3-257ENST00000637110 E9PMD0 336 aa12.85□□□□□ -0.35
CLN3-257ENST00000637110 OFD1O75665 1012 aa12.85□□□□□ -0.35
CLN3-257ENST00000637110 LMNAP02545 664 aaKnown RBP12.85□□□□□ -0.35
CLN3-257ENST00000637110 SSBP05455 408 aaKnown RBP eCLIP12.85□□□□□ -0.35
CLN3-257ENST00000637110 PDCP20941 246 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 308.8 ms