RNA–Protein interactions for RNA: ENST00000636172.1

CLN3-245, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,536 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-245ENST00000636172 BFSP2Q13515 415 aa22.52■■□□□ 1.2
CLN3-245ENST00000636172 PCBP1Q15365 356 aaKnown RBP eCLIP22.52■■□□□ 1.2
CLN3-245ENST00000636172 ATF7IP2Q5U623 682 aa22.52■■□□□ 1.2
CLN3-245ENST00000636172 CATSPER4Q7RTX7 472 aa22.52■■□□□ 1.2
CLN3-245ENST00000636172 TMEM174Q8WUU8 243 aa22.52■■□□□ 1.2
CLN3-245ENST00000636172 DMAC2Q9NW81 257 aa22.52■■□□□ 1.2
CLN3-245ENST00000636172 NOC2LQ9Y3T9 749 aaKnown RBP22.52■■□□□ 1.2
CLN3-245ENST00000636172 STYXL1Q9Y6J8 313 aa22.52■■□□□ 1.2
CLN3-245ENST00000636172 GOLGA6L19H0YKK7 550 aa22.52■■□□□ 1.19
CLN3-245ENST00000636172 ARF4P18085 180 aaPredicted RBP22.52■■□□□ 1.19
CLN3-245ENST00000636172 ADAM9Q13443 819 aa22.52■■□□□ 1.19
CLN3-245ENST00000636172 GSE1Q14687 1217 aa22.52■■□□□ 1.19
CLN3-245ENST00000636172 FBXO47Q5MNV8 452 aa22.52■■□□□ 1.19
CLN3-245ENST00000636172 ARMCX5Q6P1M9 558 aa22.52■■□□□ 1.19
CLN3-245ENST00000636172 FAM228AQ86W67 206 aa22.52■■□□□ 1.19
CLN3-245ENST00000636172 SLC9A9Q8IVB4 645 aa22.52■■□□□ 1.19
CLN3-245ENST00000636172 ZBTB45Q96K62 511 aaPredicted RBP22.52■■□□□ 1.19
CLN3-245ENST00000636172 NOC4LQ9BVI4 516 aaKnown RBP22.52■■□□□ 1.19
CLN3-245ENST00000636172 HAPLN2Q9GZV7 340 aa22.52■■□□□ 1.19
CLN3-245ENST00000636172 PTPRHQ9HD43 1115 aa22.52■■□□□ 1.19
CLN3-245ENST00000636172 PITPNM1O00562 1244 aa22.51■■□□□ 1.19
CLN3-245ENST00000636172 ABLIM1O14639 778 aa22.51■■□□□ 1.19
CLN3-245ENST00000636172 TOM1L1O75674 476 aa22.51■■□□□ 1.19
CLN3-245ENST00000636172 SELPP16109 830 aa22.51■■□□□ 1.19
CLN3-245ENST00000636172 PROZP22891 400 aa22.51■■□□□ 1.19
CLN3-245ENST00000636172 CYP2J2P51589 502 aa22.51■■□□□ 1.19
CLN3-245ENST00000636172 LPIN1Q14693 890 aa22.51■■□□□ 1.19
CLN3-245ENST00000636172 HSP90AA4PQ58FG1 418 aa22.51■■□□□ 1.19
CLN3-245ENST00000636172 CDKAL1Q5VV42 579 aa22.51■■□□□ 1.19
CLN3-245ENST00000636172 IRF2BP1Q8IU81 584 aa22.51■■□□□ 1.19
CLN3-245ENST00000636172 CPB2Q96IY4 423 aa22.51■■□□□ 1.19
CLN3-245ENST00000636172 PCIF1Q9H4Z3 704 aa22.51■■□□□ 1.19
CLN3-245ENST00000636172 THAP9Q9H5L6 903 aa22.51■■□□□ 1.19
CLN3-245ENST00000636172 ANKFY1Q9P2R3 1169 aa22.51■■□□□ 1.19
CLN3-245ENST00000636172 TANC1Q9C0D5 1861 aa22.5■■□□□ 1.19
CLN3-245ENST00000636172 GOLGA6L3A6NEY3 463 aa22.5■■□□□ 1.19
CLN3-245ENST00000636172 RPS6KA5O75582 802 aa22.5■■□□□ 1.19
CLN3-245ENST00000636172 GHRP10912 638 aa22.5■■□□□ 1.19
CLN3-245ENST00000636172 ZNF18P17022 549 aa22.5■■□□□ 1.19
CLN3-245ENST00000636172 GARTP22102 1010 aa22.5■■□□□ 1.19
CLN3-245ENST00000636172 RPL13P26373 211 aaKnown RBP22.5■■□□□ 1.19
CLN3-245ENST00000636172 HOXA11P31270 313 aaPredicted RBP22.5■■□□□ 1.19
CLN3-245ENST00000636172 MLLT1Q03111 559 aaPredicted RBP22.5■■□□□ 1.19
CLN3-245ENST00000636172 MYBPC2Q14324 1141 aa22.5■■□□□ 1.19
CLN3-245ENST00000636172 MBTPS1Q14703 1052 aa22.5■■□□□ 1.19
CLN3-245ENST00000636172 EEF1DP3Q658K8 133 aa22.5■■□□□ 1.19
CLN3-245ENST00000636172 LRRC8DQ7L1W4 858 aa22.5■■□□□ 1.19
CLN3-245ENST00000636172 NOC3LQ8WTT2 800 aaKnown RBP22.5■■□□□ 1.19
CLN3-245ENST00000636172 POMGNT1Q8WZA1 660 aa22.5■■□□□ 1.19
CLN3-245ENST00000636172 CEP63Q96MT8 703 aa22.5■■□□□ 1.19
CLN3-245ENST00000636172 PDZD7Q9H5P4 517 aa22.5■■□□□ 1.19
CLN3-245ENST00000636172 AGO3Q9H9G7 860 aaKnown RBP22.5■■□□□ 1.19
CLN3-245ENST00000636172 AGPAT5Q9NUQ2 364 aa22.5■■□□□ 1.19
CLN3-245ENST00000636172 HSPBP1Q9NZL4 362 aa22.5■■□□□ 1.19
CLN3-245ENST00000636172 TBX21Q9UL17 535 aa22.5■■□□□ 1.19
CLN3-245ENST00000636172 TNFSF13BQ9Y275 285 aa22.5■■□□□ 1.19
CLN3-245ENST00000636172 UMODL1Q5DID0 1318 aa22.49■■□□□ 1.19
CLN3-245ENST00000636172 A0A0B4J269 797 aa22.49■■□□□ 1.19
CLN3-245ENST00000636172 CETN3O15182 167 aa22.49■■□□□ 1.19
CLN3-245ENST00000636172 TMEM132AQ24JP5 1023 aa22.49■■□□□ 1.19
CLN3-245ENST00000636172 SLFN12LQ6IEE8 588 aa22.49■■□□□ 1.19
CLN3-245ENST00000636172 MPZL3Q6UWV2 235 aa22.49■■□□□ 1.19
CLN3-245ENST00000636172 CDR2LQ86X02 465 aaPredicted RBP22.49■■□□□ 1.19
CLN3-245ENST00000636172 ZSWIM2Q8NEG5 633 aa22.49■■□□□ 1.19
CLN3-245ENST00000636172 HIPK3Q9H422 1215 aa22.49■■□□□ 1.19
CLN3-245ENST00000636172 ST3GAL5Q9UNP4 418 aa22.49■■□□□ 1.19
CLN3-245ENST00000636172 SQORQ9Y6N5 450 aa22.49■■□□□ 1.19
CLN3-245ENST00000636172 ALPK3Q96L96 1907 aa22.48■■□□□ 1.19
CLN3-245ENST00000636172 A0A1B0GUA9 196 aa22.48■■□□□ 1.19
CLN3-245ENST00000636172 CLDN3O15551 220 aa22.48■■□□□ 1.19
CLN3-245ENST00000636172 FGFR1OPO95684 399 aaKnown RBP22.48■■□□□ 1.19
CLN3-245ENST00000636172 CLTBP09497 229 aa22.48■■□□□ 1.19
CLN3-245ENST00000636172 ATP1A3P13637 1013 aa22.48■■□□□ 1.19
CLN3-245ENST00000636172 CASP4P49662 377 aa22.48■■□□□ 1.19
CLN3-245ENST00000636172 MCL1Q07820 350 aa22.48■■□□□ 1.19
CLN3-245ENST00000636172 AKAP3O75969 853 aa22.47■■□□□ 1.19
CLN3-245ENST00000636172 AXLP30530 894 aa22.47■■□□□ 1.19
CLN3-245ENST00000636172 CD52P31358 61 aa22.47■■□□□ 1.19
CLN3-245ENST00000636172 MATR3P43243 847 aaKnown RBP eCLIP22.47■■□□□ 1.19
CLN3-245ENST00000636172 TPM4P67936 248 aa22.47■■□□□ 1.19
CLN3-245ENST00000636172 NCBP1Q09161 790 aaKnown RBP22.47■■□□□ 1.19
CLN3-245ENST00000636172 ZNF568Q3ZCX4 644 aa22.47■■□□□ 1.19
CLN3-245ENST00000636172 CEP135Q66GS9 1140 aa22.47■■□□□ 1.19
CLN3-245ENST00000636172 FILIP1Q7Z7B0 1213 aa22.47■■□□□ 1.19
CLN3-245ENST00000636172 ZBTB33Q86T24 672 aa22.47■■□□□ 1.19
CLN3-245ENST00000636172 USP38Q8NB14 1042 aa22.47■■□□□ 1.19
CLN3-245ENST00000636172 XXYLT1Q8NBI6 393 aa22.47■■□□□ 1.19
CLN3-245ENST00000636172 SAAL1Q96ER3 474 aa22.47■■□□□ 1.19
CLN3-245ENST00000636172 TCHPQ9BT92 498 aa22.47■■□□□ 1.19
CLN3-245ENST00000636172 MSTO1Q9BUK6 570 aa22.47■■□□□ 1.19
CLN3-245ENST00000636172 CDT1Q9H211 546 aa22.47■■□□□ 1.19
CLN3-245ENST00000636172 ERVK-5Q9HDB9 667 aa22.47■■□□□ 1.19
CLN3-245ENST00000636172 TMEM39AQ9NV64 488 aa22.47■■□□□ 1.19
CLN3-245ENST00000636172 PADI3Q9ULW8 664 aa22.47■■□□□ 1.19
CLN3-245ENST00000636172 PIN4Q9Y237 131 aaKnown RBP22.47■■□□□ 1.19
CLN3-245ENST00000636172 N4BP3O15049 544 aa22.47■■□□□ 1.19
CLN3-245ENST00000636172 EXOC3O60645 756 aa22.47■■□□□ 1.19
CLN3-245ENST00000636172 PAK2Q13177 524 aa22.47■■□□□ 1.19
CLN3-245ENST00000636172 NOLC1Q14978 699 aaKnown RBP eCLIP22.47■■□□□ 1.19
CLN3-245ENST00000636172 NOTUMQ6P988 496 aa22.47■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms