RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 LEFTY2O00292 366 aa4.41□□□□□ -1.7
SCN1A-208ENST00000625916 ELL2O00472 640 aaPredicted RBP4.41□□□□□ -1.7
SCN1A-208ENST00000625916 CLK3P49761 638 aaKnown RBP4.41□□□□□ -1.7
SCN1A-208ENST00000625916 RNASE9P60153 205 aaKnown RBP4.41□□□□□ -1.7
SCN1A-208ENST00000625916 ERCC6LQ2NKX8 1250 aa4.41□□□□□ -1.7
SCN1A-208ENST00000625916 LRCH2Q5VUJ6 765 aa4.41□□□□□ -1.7
SCN1A-208ENST00000625916 CREB3L3Q68CJ9 461 aa4.41□□□□□ -1.7
SCN1A-208ENST00000625916 CCDC62Q6P9F0 684 aa4.41□□□□□ -1.7
SCN1A-208ENST00000625916 ESPNLQ6ZVH7 1005 aa4.41□□□□□ -1.7
SCN1A-208ENST00000625916 TAS1R1Q7RTX1 841 aa4.41□□□□□ -1.7
SCN1A-208ENST00000625916 PLXDC1Q8IUK5 500 aa4.41□□□□□ -1.7
SCN1A-208ENST00000625916 PASD1Q8IV76 773 aa4.41□□□□□ -1.7
SCN1A-208ENST00000625916 ZMAT4Q9H898 229 aa4.41□□□□□ -1.7
SCN1A-208ENST00000625916 RSAD1Q9HA92 442 aa4.41□□□□□ -1.7
SCN1A-208ENST00000625916 SLTMQ9NWH9 1034 aaKnown RBP eCLIP4.41□□□□□ -1.7
SCN1A-208ENST00000625916 USP36Q9P275 1121 aaKnown RBP4.41□□□□□ -1.7
SCN1A-208ENST00000625916 NRP2O60462 931 aa4.4□□□□□ -1.71
SCN1A-208ENST00000625916 GAS7O60861 476 aa4.4□□□□□ -1.71
SCN1A-208ENST00000625916 HKR1P10072 659 aa4.4□□□□□ -1.71
SCN1A-208ENST00000625916 ATP2A2P16615 1042 aaKnown RBP4.4□□□□□ -1.71
SCN1A-208ENST00000625916 SDSP20132 328 aa4.4□□□□□ -1.71
SCN1A-208ENST00000625916 GUCY1B3Q02153 619 aa4.4□□□□□ -1.71
SCN1A-208ENST00000625916 NHLH2Q02577 135 aa4.4□□□□□ -1.71
SCN1A-208ENST00000625916 LMBR1LQ6UX01 489 aa4.4□□□□□ -1.71
SCN1A-208ENST00000625916 GAB3Q8WWW8 586 aa4.4□□□□□ -1.71
SCN1A-208ENST00000625916 C8orf37Q96NL8 207 aa4.4□□□□□ -1.71
SCN1A-208ENST00000625916 MSRAQ9UJ68 235 aa4.4□□□□□ -1.71
SCN1A-208ENST00000625916 INSL6Q9Y581 213 aa4.4□□□□□ -1.71
SCN1A-208ENST00000625916 COX11Q9Y6N1 276 aa4.4□□□□□ -1.71
SCN1A-208ENST00000625916 UNC119BA6NIH7 251 aa4.39□□□□□ -1.71
SCN1A-208ENST00000625916 DIRC3C9JPN6 131 aa4.39□□□□□ -1.71
SCN1A-208ENST00000625916 HLA-DOAP06340 250 aa4.39□□□□□ -1.71
SCN1A-208ENST00000625916 SPATA31D3P0C874 917 aa4.39□□□□□ -1.71
SCN1A-208ENST00000625916 CDK4P11802 303 aa4.39□□□□□ -1.71
SCN1A-208ENST00000625916 CXCR5P32302 372 aa4.39□□□□□ -1.71
SCN1A-208ENST00000625916 BMPR1AP36894 532 aa4.39□□□□□ -1.71
SCN1A-208ENST00000625916 NRG3P56975 720 aa4.39□□□□□ -1.71
SCN1A-208ENST00000625916 MGAT5Q09328 741 aa4.39□□□□□ -1.71
SCN1A-208ENST00000625916 LRRC32Q14392 662 aa4.39□□□□□ -1.71
SCN1A-208ENST00000625916 BEAN1Q3B7T3 259 aa4.39□□□□□ -1.71
SCN1A-208ENST00000625916 FBXO42Q6P3S6 717 aa4.39□□□□□ -1.71
SCN1A-208ENST00000625916 SPATA31D4Q6ZUB0 917 aa4.39□□□□□ -1.71
SCN1A-208ENST00000625916 MSL3Q8N5Y2 521 aaKnown RBP4.39□□□□□ -1.71
SCN1A-208ENST00000625916 CPEB3Q8NE35 698 aaKnown RBP4.39□□□□□ -1.71
SCN1A-208ENST00000625916 OR10H5Q8NGA6 315 aa4.39□□□□□ -1.71
SCN1A-208ENST00000625916 COQ10AQ96MF6 247 aa4.39□□□□□ -1.71
SCN1A-208ENST00000625916 R3HDMLQ9H3Y0 253 aa4.39□□□□□ -1.71
SCN1A-208ENST00000625916 SYBUQ9NX95 663 aa4.39□□□□□ -1.71
SCN1A-208ENST00000625916 POGKQ9P215 609 aa4.39□□□□□ -1.71
SCN1A-208ENST00000625916 CHST2Q9Y4C5 530 aa4.39□□□□□ -1.71
SCN1A-208ENST00000625916 EPN1Q9Y6I3 576 aaPredicted RBP4.39□□□□□ -1.71
SCN1A-208ENST00000625916 PPP1R12AO14974 1030 aaPredicted RBP4.38□□□□□ -1.71
SCN1A-208ENST00000625916 SEC24DO94855 1032 aaPredicted RBP4.38□□□□□ -1.71
SCN1A-208ENST00000625916 ZSCAN20P17040 1043 aaPredicted RBP4.38□□□□□ -1.71
SCN1A-208ENST00000625916 DDX6P26196 483 aaKnown RBP eCLIP4.38□□□□□ -1.71
SCN1A-208ENST00000625916 GPR15P49685 360 aa4.38□□□□□ -1.71
SCN1A-208ENST00000625916 SEC24CP53992 1094 aa4.38□□□□□ -1.71
SCN1A-208ENST00000625916 APBA1Q02410 837 aa4.38□□□□□ -1.71
SCN1A-208ENST00000625916 DDB1Q16531 1140 aa4.38□□□□□ -1.71
SCN1A-208ENST00000625916 COLEC12Q5KU26 742 aa4.38□□□□□ -1.71
SCN1A-208ENST00000625916 ZBTB41Q5SVQ8 909 aa4.38□□□□□ -1.71
SCN1A-208ENST00000625916 EFCAB12Q6NXP0 572 aa4.38□□□□□ -1.71
SCN1A-208ENST00000625916 GPRIN1Q7Z2K8 1008 aa4.38□□□□□ -1.71
SCN1A-208ENST00000625916 NXPE1Q8N323 547 aa4.38□□□□□ -1.71
SCN1A-208ENST00000625916 EFHBQ8N7U6 833 aa4.38□□□□□ -1.71
SCN1A-208ENST00000625916 LINC00476Q8WZB0 136 aa4.38□□□□□ -1.71
SCN1A-208ENST00000625916 CDC5LQ99459 802 aaKnown RBP4.38□□□□□ -1.71
SCN1A-208ENST00000625916 FDXACB1Q9BRP7 624 aaPredicted RBP4.38□□□□□ -1.71
SCN1A-208ENST00000625916 TEX101Q9BY14 249 aa4.38□□□□□ -1.71
SCN1A-208ENST00000625916 THG1LQ9NWX6 298 aaKnown RBP4.38□□□□□ -1.71
SCN1A-208ENST00000625916 A0A1W2PR48 441 aa4.37□□□□□ -1.71
SCN1A-208ENST00000625916 PIPSLA2A3N6 862 aa4.37□□□□□ -1.71
SCN1A-208ENST00000625916 ZNF185O15231 689 aa4.37□□□□□ -1.71
SCN1A-208ENST00000625916 KPNA6O60684 536 aa4.37□□□□□ -1.71
SCN1A-208ENST00000625916 PFKMP08237 780 aa4.37□□□□□ -1.71
SCN1A-208ENST00000625916 CLEC2LP0C7M8 214 aa4.37□□□□□ -1.71
SCN1A-208ENST00000625916 RBP3P10745 1247 aa4.37□□□□□ -1.71
SCN1A-208ENST00000625916 MGAT1P26572 445 aa4.37□□□□□ -1.71
SCN1A-208ENST00000625916 PLA2G5P39877 138 aa4.37□□□□□ -1.71
SCN1A-208ENST00000625916 NEK4P51957 841 aa4.37□□□□□ -1.71
SCN1A-208ENST00000625916 MXRA7P84157 204 aa4.37□□□□□ -1.71
SCN1A-208ENST00000625916 PPARAQ07869 468 aa4.37□□□□□ -1.71
SCN1A-208ENST00000625916 SQSTM1Q13501 440 aa4.37□□□□□ -1.71
SCN1A-208ENST00000625916 UBE3CQ15386 1083 aa4.37□□□□□ -1.71
SCN1A-208ENST00000625916 PDCD4Q53EL6 469 aaKnown RBP4.37□□□□□ -1.71
SCN1A-208ENST00000625916 PRR16Q569H4 304 aa4.37□□□□□ -1.71
SCN1A-208ENST00000625916 CCDC178Q5BJE1 867 aa4.37□□□□□ -1.71
SCN1A-208ENST00000625916 DRICH1Q6PGQ1 229 aaPredicted RBP4.37□□□□□ -1.71
SCN1A-208ENST00000625916 SYT12Q8IV01 421 aa4.37□□□□□ -1.71
SCN1A-208ENST00000625916 GLB1L2Q8IW92 636 aa4.37□□□□□ -1.71
SCN1A-208ENST00000625916 CHTF18Q8WVB6 975 aa4.37□□□□□ -1.71
SCN1A-208ENST00000625916 NELL1Q92832 810 aa4.37□□□□□ -1.71
SCN1A-208ENST00000625916 ZNF496Q96IT1 587 aaPredicted RBP4.37□□□□□ -1.71
SCN1A-208ENST00000625916 OSBPL2Q9H1P3 480 aa4.37□□□□□ -1.71
SCN1A-208ENST00000625916 RNF181Q9P0P0 153 aa4.37□□□□□ -1.71
SCN1A-208ENST00000625916 MAGEC2Q9UBF1 373 aaPredicted RBP4.37□□□□□ -1.71
SCN1A-208ENST00000625916 ZNF891A8MT65 544 aaPredicted RBP4.36□□□□□ -1.71
SCN1A-208ENST00000625916 B5MCH6 92 aa4.36□□□□□ -1.71
SCN1A-208ENST00000625916 PRAMEF4O60810 478 aa4.36□□□□□ -1.71
SCN1A-208ENST00000625916 ASMTLO95671 621 aa4.36□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 71.8 ms