RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 CYFIP2Q96F07 1278 aa15.61■□□□□ 0.09
SHROOM1-208ENST00000617339 BTBD6Q96KE9 485 aa15.61■□□□□ 0.09
SHROOM1-208ENST00000617339 SLC38A10Q9HBR0 1119 aa15.61■□□□□ 0.09
SHROOM1-208ENST00000617339 TUFT1Q9NNX1 390 aa15.61■□□□□ 0.09
SHROOM1-208ENST00000617339 CSDE1O75534 798 aaKnown RBP15.61■□□□□ 0.09
SHROOM1-208ENST00000617339 ACOT2P49753 483 aa15.61■□□□□ 0.09
SHROOM1-208ENST00000617339 BACE1P56817 501 aa15.61■□□□□ 0.09
SHROOM1-208ENST00000617339 QPCTQ16769 361 aa15.61■□□□□ 0.09
SHROOM1-208ENST00000617339 AADACL2Q6P093 401 aa15.61■□□□□ 0.09
SHROOM1-208ENST00000617339 IRF2BP2Q7Z5L9 587 aa15.61■□□□□ 0.09
SHROOM1-208ENST00000617339 IFT20Q8IY31 132 aa15.61■□□□□ 0.09
SHROOM1-208ENST00000617339 DDX47Q9H0S4 455 aaKnown RBP15.61■□□□□ 0.09
SHROOM1-208ENST00000617339 GANQ9H2C0 597 aa15.61■□□□□ 0.09
SHROOM1-208ENST00000617339 TPX2Q9ULW0 747 aaKnown RBP15.61■□□□□ 0.09
SHROOM1-208ENST00000617339 TRAF3IP3Q9Y228 551 aa15.61■□□□□ 0.09
SHROOM1-208ENST00000617339 LRRIQ4A6NIV6 560 aa15.6■□□□□ 0.09
SHROOM1-208ENST00000617339 EIF4E1BA6NMX2 242 aaKnown RBP15.6■□□□□ 0.09
SHROOM1-208ENST00000617339 PGK2P07205 417 aa15.6■□□□□ 0.09
SHROOM1-208ENST00000617339 H2AFZP0C0S5 128 aa15.6■□□□□ 0.09
SHROOM1-208ENST00000617339 PPP3CAQ08209 521 aa15.6■□□□□ 0.09
SHROOM1-208ENST00000617339 PPP2R5CQ13362 524 aa15.6■□□□□ 0.09
SHROOM1-208ENST00000617339 STXBP4Q6ZWJ1 553 aa15.6■□□□□ 0.09
SHROOM1-208ENST00000617339 H2AFVQ71UI9 128 aa15.6■□□□□ 0.09
SHROOM1-208ENST00000617339 SLC30A5Q8TAD4 765 aa15.6■□□□□ 0.09
SHROOM1-208ENST00000617339 NAGPAQ9UK23 515 aa15.6■□□□□ 0.09
SHROOM1-208ENST00000617339 ZNF831Q5JPB2 1677 aa15.6■□□□□ 0.09
SHROOM1-208ENST00000617339 GAP43P17677 238 aa15.6■□□□□ 0.09
SHROOM1-208ENST00000617339 SATB1Q01826 763 aa15.6■□□□□ 0.09
SHROOM1-208ENST00000617339 FIGNQ5HY92 759 aa15.6■□□□□ 0.09
SHROOM1-208ENST00000617339 KDM7AQ6ZMT4 941 aa15.6■□□□□ 0.09
SHROOM1-208ENST00000617339 DPH6Q7L8W6 267 aa15.6■□□□□ 0.09
SHROOM1-208ENST00000617339 FAM213AQ9BRX8 229 aa15.6■□□□□ 0.09
SHROOM1-208ENST00000617339 INTS2Q9H0H0 1204 aaKnown RBP15.6■□□□□ 0.09
SHROOM1-208ENST00000617339 DPH5Q9H2P9 285 aa15.6■□□□□ 0.09
SHROOM1-208ENST00000617339 KMT5AQ9NQR1 393 aa15.6■□□□□ 0.09
SHROOM1-208ENST00000617339 CCDC189A1A4V9 331 aa15.6■□□□□ 0.09
SHROOM1-208ENST00000617339 DNM1LO00429 736 aa15.6■□□□□ 0.09
SHROOM1-208ENST00000617339 NPM3O75607 178 aaKnown RBP15.6■□□□□ 0.09
SHROOM1-208ENST00000617339 GALCP54803 685 aa15.6■□□□□ 0.09
SHROOM1-208ENST00000617339 BIRC3Q13489 604 aa15.6■□□□□ 0.09
SHROOM1-208ENST00000617339 TMEM132BQ14DG7 1078 aa15.6■□□□□ 0.09
SHROOM1-208ENST00000617339 PHLDB3Q6NSJ2 640 aa15.6■□□□□ 0.09
SHROOM1-208ENST00000617339 METTL14Q9HCE5 456 aaKnown RBP15.6■□□□□ 0.09
SHROOM1-208ENST00000617339 CTTNBP2NLQ9P2B4 639 aa15.6■□□□□ 0.09
SHROOM1-208ENST00000617339 CTNND1O60716 968 aaKnown RBP15.59■□□□□ 0.09
SHROOM1-208ENST00000617339 PTPRAP18433 802 aa15.59■□□□□ 0.09
SHROOM1-208ENST00000617339 ARHGEF19Q8IW93 802 aa15.59■□□□□ 0.09
SHROOM1-208ENST00000617339 PXMP2Q9NR77 195 aa15.59■□□□□ 0.09
SHROOM1-208ENST00000617339 HSPBP1Q9NZL4 362 aa15.59■□□□□ 0.09
SHROOM1-208ENST00000617339 DHX15O43143 795 aaKnown RBP15.59■□□□□ 0.09
SHROOM1-208ENST00000617339 CYP26A1O43174 497 aa15.59■□□□□ 0.09
SHROOM1-208ENST00000617339 UHMK1Q8TAS1 419 aaKnown RBP15.59■□□□□ 0.09
SHROOM1-208ENST00000617339 ATP6V1G3Q96LB4 118 aa15.59■□□□□ 0.09
SHROOM1-208ENST00000617339 DDX3XO00571 662 aaKnown RBP eCLIP15.58■□□□□ 0.09
SHROOM1-208ENST00000617339 TNNI1P19237 187 aa15.58■□□□□ 0.09
SHROOM1-208ENST00000617339 PAK2Q13177 524 aa15.58■□□□□ 0.09
SHROOM1-208ENST00000617339 CFAP221Q4G0U5 840 aa15.58■□□□□ 0.09
SHROOM1-208ENST00000617339 METTL13Q8N6R0 699 aa15.58■□□□□ 0.09
SHROOM1-208ENST00000617339 THOC1Q96FV9 657 aaKnown RBP15.58■□□□□ 0.09
SHROOM1-208ENST00000617339 WDR3Q9UNX4 943 aaKnown RBP eCLIP15.58■□□□□ 0.09
SHROOM1-208ENST00000617339 GRID2IPA4D2P6 1211 aa15.58■□□□□ 0.08
SHROOM1-208ENST00000617339 RASSF9O75901 435 aa15.58■□□□□ 0.08
SHROOM1-208ENST00000617339 MESDQ14696 234 aa15.58■□□□□ 0.08
SHROOM1-208ENST00000617339 ACCSLQ4AC99 568 aa15.58■□□□□ 0.08
SHROOM1-208ENST00000617339 EPM2AIP1Q7L775 607 aaPredicted RBP15.58■□□□□ 0.08
SHROOM1-208ENST00000617339 CPNE8Q86YQ8 564 aa15.58■□□□□ 0.08
SHROOM1-208ENST00000617339 FUKQ8N0W3 1084 aa15.58■□□□□ 0.08
SHROOM1-208ENST00000617339 IVNS1ABPQ9Y6Y0 642 aa15.58■□□□□ 0.08
SHROOM1-208ENST00000617339 VAMP7P51809 220 aa15.58■□□□□ 0.08
SHROOM1-208ENST00000617339 BFSP1Q12934 665 aa15.58■□□□□ 0.08
SHROOM1-208ENST00000617339 PPP4R3CPQ6ZMV5 832 aa15.58■□□□□ 0.08
SHROOM1-208ENST00000617339 ANO5Q75V66 913 aa15.58■□□□□ 0.08
SHROOM1-208ENST00000617339 ZBTB33Q86T24 672 aa15.58■□□□□ 0.08
SHROOM1-208ENST00000617339 PNMA8AQ86V59 439 aaPredicted RBP15.58■□□□□ 0.08
SHROOM1-208ENST00000617339 FAM228AQ86W67 206 aa15.58■□□□□ 0.08
SHROOM1-208ENST00000617339 SPATS2Q86XZ4 545 aaKnown RBP15.58■□□□□ 0.08
SHROOM1-208ENST00000617339 CASKIN2Q8WXE0 1202 aa15.58■□□□□ 0.08
SHROOM1-208ENST00000617339 ZBTB45Q96K62 511 aaPredicted RBP15.58■□□□□ 0.08
SHROOM1-208ENST00000617339 FAM107AO95990 144 aa15.57■□□□□ 0.08
SHROOM1-208ENST00000617339 ITGA4P13612 1032 aa15.57■□□□□ 0.08
SHROOM1-208ENST00000617339 TCP1P17987 556 aaKnown RBP15.57■□□□□ 0.08
SHROOM1-208ENST00000617339 ZNF394Q53GI3 561 aa15.57■□□□□ 0.08
SHROOM1-208ENST00000617339 TREML2Q5T2D2 321 aa15.57■□□□□ 0.08
SHROOM1-208ENST00000617339 DAB2IPQ5VWQ8 1189 aa15.57■□□□□ 0.08
SHROOM1-208ENST00000617339 LLGL2Q6P1M3 1020 aa15.57■□□□□ 0.08
SHROOM1-208ENST00000617339 CPLX4Q7Z7G2 160 aa15.57■□□□□ 0.08
SHROOM1-208ENST00000617339 TRIM50Q86XT4 487 aa15.57■□□□□ 0.08
SHROOM1-208ENST00000617339 BSNDQ8WZ55 320 aa15.57■□□□□ 0.08
SHROOM1-208ENST00000617339 CLMNQ96JQ2 1002 aa15.57■□□□□ 0.08
SHROOM1-208ENST00000617339 CELF4Q9BZC1 486 aaKnown RBP15.57■□□□□ 0.08
SHROOM1-208ENST00000617339 OSBPL7Q9BZF2 842 aa15.57■□□□□ 0.08
SHROOM1-208ENST00000617339 KIAA1683Q9H0B3 1180 aa15.57■□□□□ 0.08
SHROOM1-208ENST00000617339 SRGAP2CP0DJJ0 459 aa15.57■□□□□ 0.08
SHROOM1-208ENST00000617339 LMNB1P20700 586 aa15.57■□□□□ 0.08
SHROOM1-208ENST00000617339 HIRAP54198 1017 aaPredicted RBP15.57■□□□□ 0.08
SHROOM1-208ENST00000617339 MAPK7Q13164 816 aa15.57■□□□□ 0.08
SHROOM1-208ENST00000617339 PPP1R7Q15435 360 aa15.57■□□□□ 0.08
SHROOM1-208ENST00000617339 MAP1SQ66K74 1059 aaPredicted RBP15.57■□□□□ 0.08
SHROOM1-208ENST00000617339 PASD1Q8IV76 773 aa15.57■□□□□ 0.08
SHROOM1-208ENST00000617339 UBLCP1Q8WVY7 318 aaPredicted RBP15.57■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms