RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 VCPP55072 806 aaKnown RBP21.08■□□□□ 0.97
CDX1-202ENST00000616154 PTENP60484 403 aa21.08■□□□□ 0.97
CDX1-202ENST00000616154 TCF15Q12870 199 aa21.08■□□□□ 0.97
CDX1-202ENST00000616154 MXD4Q14582 209 aaPredicted RBP21.08■□□□□ 0.97
CDX1-202ENST00000616154 IFNLR1Q8IU57 520 aaPredicted RBP21.08■□□□□ 0.97
CDX1-202ENST00000616154 TPH2Q8IWU9 490 aa21.08■□□□□ 0.97
CDX1-202ENST00000616154 ZDHHC14Q8IZN3 488 aa21.08■□□□□ 0.97
CDX1-202ENST00000616154 SMG8Q8ND04 991 aaKnown RBP21.08■□□□□ 0.97
CDX1-202ENST00000616154 FBXO18Q8NFZ0 1043 aa21.08■□□□□ 0.97
CDX1-202ENST00000616154 EIF2AK1Q9BQI3 630 aaKnown RBP21.08■□□□□ 0.97
CDX1-202ENST00000616154 EMILIN2Q9BXX0 1053 aa21.08■□□□□ 0.97
CDX1-202ENST00000616154 USTQ9Y2C2 406 aa21.08■□□□□ 0.97
CDX1-202ENST00000616154 FAN1Q9Y2M0 1017 aa21.08■□□□□ 0.97
CDX1-202ENST00000616154 WNT7AO00755 349 aa21.07■□□□□ 0.96
CDX1-202ENST00000616154 INPPL1O15357 1258 aa21.07■□□□□ 0.96
CDX1-202ENST00000616154 TSPAN1O60635 241 aa21.07■□□□□ 0.96
CDX1-202ENST00000616154 POMCP01189 267 aa21.07■□□□□ 0.96
CDX1-202ENST00000616154 ITGA4P13612 1032 aa21.07■□□□□ 0.96
CDX1-202ENST00000616154 AXLP30530 894 aa21.07■□□□□ 0.96
CDX1-202ENST00000616154 POU5F1BQ06416 359 aa21.07■□□□□ 0.96
CDX1-202ENST00000616154 KANK3Q6NY19 840 aa21.07■□□□□ 0.96
CDX1-202ENST00000616154 CABP7Q86V35 215 aa21.07■□□□□ 0.96
CDX1-202ENST00000616154 TDRD5Q8NAT2 981 aaKnown RBP21.07■□□□□ 0.96
CDX1-202ENST00000616154 C8orf76Q96K31 380 aa21.07■□□□□ 0.96
CDX1-202ENST00000616154 KLHL5Q96PQ7 755 aa21.07■□□□□ 0.96
CDX1-202ENST00000616154 MTMR9Q96QG7 549 aa21.07■□□□□ 0.96
CDX1-202ENST00000616154 HSD17B14Q9BPX1 270 aa21.07■□□□□ 0.96
CDX1-202ENST00000616154 FOXP1Q9H334 677 aaPredicted RBP21.07■□□□□ 0.96
CDX1-202ENST00000616154 SFXN1Q9H9B4 322 aa21.07■□□□□ 0.96
CDX1-202ENST00000616154 DBR1Q9UK59 544 aaKnown RBP21.07■□□□□ 0.96
CDX1-202ENST00000616154 PCDHA12Q9UN75 941 aa21.07■□□□□ 0.96
CDX1-202ENST00000616154 IPPQ9Y573 584 aa21.07■□□□□ 0.96
CDX1-202ENST00000616154 NRP1O14786 923 aa21.06■□□□□ 0.96
CDX1-202ENST00000616154 LILRB3O75022 631 aa21.06■□□□□ 0.96
CDX1-202ENST00000616154 AVPR2P30518 371 aa21.06■□□□□ 0.96
CDX1-202ENST00000616154 CLCN4P51793 760 aa21.06■□□□□ 0.96
CDX1-202ENST00000616154 TFDP1Q14186 410 aa21.06■□□□□ 0.96
CDX1-202ENST00000616154 SAFBQ15424 915 aaKnown RBP eCLIP21.06■□□□□ 0.96
CDX1-202ENST00000616154 CALCRLQ16602 461 aa21.06■□□□□ 0.96
CDX1-202ENST00000616154 NOTUMQ6P988 496 aa21.06■□□□□ 0.96
CDX1-202ENST00000616154 EIF2AQ9BY44 585 aaKnown RBP21.06■□□□□ 0.96
CDX1-202ENST00000616154 ANKEF1Q9NU02 776 aa21.06■□□□□ 0.96
CDX1-202ENST00000616154 PLXNA3P51805 1871 aa21.06■□□□□ 0.96
CDX1-202ENST00000616154 ST18O60284 1047 aa21.05■□□□□ 0.96
CDX1-202ENST00000616154 NEMFO60524 1076 aa21.05■□□□□ 0.96
CDX1-202ENST00000616154 DGAT1O75907 488 aa21.05■□□□□ 0.96
CDX1-202ENST00000616154 BRD1O95696 1058 aa21.05■□□□□ 0.96
CDX1-202ENST00000616154 PDGFBP01127 241 aaPredicted RBP21.05■□□□□ 0.96
CDX1-202ENST00000616154 SOD2P04179 222 aa21.05■□□□□ 0.96
CDX1-202ENST00000616154 SSBP05455 408 aaKnown RBP eCLIP21.05■□□□□ 0.96
CDX1-202ENST00000616154 CNPP09543 421 aaKnown RBP21.05■□□□□ 0.96
CDX1-202ENST00000616154 KLRC2P26717 231 aa21.05■□□□□ 0.96
CDX1-202ENST00000616154 ORC2Q13416 577 aaPredicted RBP21.05■□□□□ 0.96
CDX1-202ENST00000616154 TMC5Q6UXY8 1006 aa21.05■□□□□ 0.96
CDX1-202ENST00000616154 GPR149Q86SP6 731 aa21.05■□□□□ 0.96
CDX1-202ENST00000616154 COLGALT2Q8IYK4 626 aa21.05■□□□□ 0.96
CDX1-202ENST00000616154 PLCD3Q8N3E9 789 aa21.05■□□□□ 0.96
CDX1-202ENST00000616154 PHOX2BQ99453 314 aa21.05■□□□□ 0.96
CDX1-202ENST00000616154 HERC2P3Q9BVR0 1158 aa21.05■□□□□ 0.96
CDX1-202ENST00000616154 MRPL17Q9NRX2 175 aaKnown RBP21.05■□□□□ 0.96
CDX1-202ENST00000616154 MARCH5Q9NX47 278 aa21.05■□□□□ 0.96
CDX1-202ENST00000616154 INO80B-WBP1J3KQ70 363 aa21.04■□□□□ 0.96
CDX1-202ENST00000616154 ARL2P36404 184 aa21.04■□□□□ 0.96
CDX1-202ENST00000616154 NUBP1P53384 320 aa21.04■□□□□ 0.96
CDX1-202ENST00000616154 MBTD1Q05BQ5 628 aa21.04■□□□□ 0.96
CDX1-202ENST00000616154 DSC1Q08554 894 aa21.04■□□□□ 0.96
CDX1-202ENST00000616154 NCBP1Q09161 790 aaKnown RBP21.04■□□□□ 0.96
CDX1-202ENST00000616154 CAPSQ13938 189 aa21.04■□□□□ 0.96
CDX1-202ENST00000616154 ASAP3Q8TDY4 903 aa21.04■□□□□ 0.96
CDX1-202ENST00000616154 CPB2Q96IY4 423 aa21.04■□□□□ 0.96
CDX1-202ENST00000616154 GAD1Q99259 594 aa21.04■□□□□ 0.96
CDX1-202ENST00000616154 NFKBIZQ9BYH8 718 aa21.04■□□□□ 0.96
CDX1-202ENST00000616154 CSRNP2Q9H175 543 aa21.04■□□□□ 0.96
CDX1-202ENST00000616154 RNF39Q9H2S5 420 aa21.04■□□□□ 0.96
CDX1-202ENST00000616154 TTC12Q9H892 705 aaPredicted RBP21.04■□□□□ 0.96
CDX1-202ENST00000616154 SSX2IPQ9Y2D8 614 aa21.04■□□□□ 0.96
CDX1-202ENST00000616154 ARL5CA6NH57 179 aa21.04■□□□□ 0.96
CDX1-202ENST00000616154 EFEMP2O95967 443 aa21.04■□□□□ 0.96
CDX1-202ENST00000616154 URODP06132 367 aa21.04■□□□□ 0.96
CDX1-202ENST00000616154 MLH1P40692 756 aa21.04■□□□□ 0.96
CDX1-202ENST00000616154 RARRES1P49788 294 aa21.04■□□□□ 0.96
CDX1-202ENST00000616154 FOSBP53539 338 aa21.04■□□□□ 0.96
CDX1-202ENST00000616154 AMHR2Q16671 573 aa21.04■□□□□ 0.96
CDX1-202ENST00000616154 RNF168Q8IYW5 571 aaPredicted RBP21.04■□□□□ 0.96
CDX1-202ENST00000616154 FEZF2Q8TBJ5 459 aa21.04■□□□□ 0.96
CDX1-202ENST00000616154 PRG3Q9Y2Y8 225 aaPredicted RBP21.04■□□□□ 0.96
CDX1-202ENST00000616154 MTCL1Q9Y4B5 1905 aaKnown RBP21.03■□□□□ 0.96
CDX1-202ENST00000616154 ASGR2P07307 311 aa21.03■□□□□ 0.96
CDX1-202ENST00000616154 ARF4P18085 180 aaPredicted RBP21.03■□□□□ 0.96
CDX1-202ENST00000616154 GLRA2P23416 452 aa21.03■□□□□ 0.96
CDX1-202ENST00000616154 OR1G1P47890 313 aa21.03■□□□□ 0.96
CDX1-202ENST00000616154 TRAPPC10P48553 1259 aa21.03■□□□□ 0.96
CDX1-202ENST00000616154 MCM2P49736 904 aa21.03■□□□□ 0.96
CDX1-202ENST00000616154 GUCY1B3Q02153 619 aa21.03■□□□□ 0.96
CDX1-202ENST00000616154 C15orf39Q6ZRI6 1047 aa21.03■□□□□ 0.96
CDX1-202ENST00000616154 CCDC149Q6ZUS6 474 aa21.03■□□□□ 0.96
CDX1-202ENST00000616154 CCDC43Q96MW1 224 aaKnown RBP21.03■□□□□ 0.96
CDX1-202ENST00000616154 RPS6KC1Q96S38 1066 aa21.03■□□□□ 0.96
CDX1-202ENST00000616154 IRF2BPLQ9H1B7 796 aa21.03■□□□□ 0.96
CDX1-202ENST00000616154 SMOC2Q9H3U7 446 aa21.03■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms