RNA–Protein interactions for RNA: ENST00000606749.1

CUX1-219, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-219ENST00000606749 RARS2Q5T160 578 aaKnown RBP8.47□□□□□ -1.05
CUX1-219ENST00000606749 NOTUMQ6P988 496 aa8.47□□□□□ -1.05
CUX1-219ENST00000606749 TAS1R1Q7RTX1 841 aa8.47□□□□□ -1.05
CUX1-219ENST00000606749 PPFIBP1Q86W92 1011 aa8.47□□□□□ -1.05
CUX1-219ENST00000606749 CATSPER3Q86XQ3 398 aa8.47□□□□□ -1.05
CUX1-219ENST00000606749 COLGALT2Q8IYK4 626 aa8.47□□□□□ -1.05
CUX1-219ENST00000606749 CCDC51Q96ER9 411 aa8.47□□□□□ -1.05
CUX1-219ENST00000606749 NECTIN4Q96NY8 510 aa8.47□□□□□ -1.05
CUX1-219ENST00000606749 GAD1Q99259 594 aa8.47□□□□□ -1.05
CUX1-219ENST00000606749 LLPHQ9BRT6 129 aaKnown RBP8.47□□□□□ -1.05
CUX1-219ENST00000606749 NFKBIZQ9BYH8 718 aa8.47□□□□□ -1.05
CUX1-219ENST00000606749 CSRNP2Q9H175 543 aa8.47□□□□□ -1.05
CUX1-219ENST00000606749 POMKQ9H5K3 350 aa8.47□□□□□ -1.05
CUX1-219ENST00000606749 TUFT1Q9NNX1 390 aa8.47□□□□□ -1.05
CUX1-219ENST00000606749 STK39Q9UEW8 545 aa8.47□□□□□ -1.05
CUX1-219ENST00000606749 NR2E1Q9Y466 385 aa8.47□□□□□ -1.05
CUX1-219ENST00000606749 HES2Q9Y543 173 aa8.47□□□□□ -1.05
CUX1-219ENST00000606749 A0A1B0GUA9 196 aa8.46□□□□□ -1.06
CUX1-219ENST00000606749 B4GALT5O43286 388 aa8.46□□□□□ -1.06
CUX1-219ENST00000606749 MED24O75448 989 aa8.46□□□□□ -1.06
CUX1-219ENST00000606749 EFEMP2O95967 443 aa8.46□□□□□ -1.06
CUX1-219ENST00000606749 SSBP05455 408 aaKnown RBP eCLIP8.46□□□□□ -1.06
CUX1-219ENST00000606749 CNPP09543 421 aaKnown RBP8.46□□□□□ -1.06
CUX1-219ENST00000606749 SP100P23497 879 aaPredicted RBP8.46□□□□□ -1.06
CUX1-219ENST00000606749 KLRC2P26717 231 aa8.46□□□□□ -1.06
CUX1-219ENST00000606749 MTHFRP42898 656 aa8.46□□□□□ -1.06
CUX1-219ENST00000606749 DSC1Q08554 894 aa8.46□□□□□ -1.06
CUX1-219ENST00000606749 SIGLEC14Q08ET2 396 aa8.46□□□□□ -1.06
CUX1-219ENST00000606749 ZNF174Q15697 407 aa8.46□□□□□ -1.06
CUX1-219ENST00000606749 PTPN21Q16825 1174 aa8.46□□□□□ -1.06
CUX1-219ENST00000606749 ATAT1Q5SQI0 421 aa8.46□□□□□ -1.06
CUX1-219ENST00000606749 IER5LQ5T953 404 aa8.46□□□□□ -1.06
CUX1-219ENST00000606749 MAEAQ7L5Y9 396 aa8.46□□□□□ -1.06
CUX1-219ENST00000606749 CABP7Q86V35 215 aa8.46□□□□□ -1.06
CUX1-219ENST00000606749 CCDC83Q8IWF9 413 aa8.46□□□□□ -1.06
CUX1-219ENST00000606749 GSTCDQ8NEC7 633 aa8.46□□□□□ -1.06
CUX1-219ENST00000606749 FEZF2Q8TBJ5 459 aa8.46□□□□□ -1.06
CUX1-219ENST00000606749 ASIC4Q96FT7 647 aa8.46□□□□□ -1.06
CUX1-219ENST00000606749 C8orf76Q96K31 380 aa8.46□□□□□ -1.06
CUX1-219ENST00000606749 RIPOR3Q96MK2 946 aa8.46□□□□□ -1.06
CUX1-219ENST00000606749 ZFP42Q96MM3 310 aa8.46□□□□□ -1.06
CUX1-219ENST00000606749 CCDC43Q96MW1 224 aaKnown RBP8.46□□□□□ -1.06
CUX1-219ENST00000606749 KLHL5Q96PQ7 755 aa8.46□□□□□ -1.06
CUX1-219ENST00000606749 NACC1Q96RE7 527 aa8.46□□□□□ -1.06
CUX1-219ENST00000606749 POLR3CQ9BUI4 534 aaPredicted RBP8.46□□□□□ -1.06
CUX1-219ENST00000606749 EMILIN2Q9BXX0 1053 aa8.46□□□□□ -1.06
CUX1-219ENST00000606749 POLR3FQ9H1D9 316 aaPredicted RBP8.46□□□□□ -1.06
CUX1-219ENST00000606749 FOXP1Q9H334 677 aaPredicted RBP8.46□□□□□ -1.06
CUX1-219ENST00000606749 GPRC5CQ9NQ84 441 aa8.46□□□□□ -1.06
CUX1-219ENST00000606749 TSHZ2Q9NRE2 1034 aa8.46□□□□□ -1.06
CUX1-219ENST00000606749 MRPL17Q9NRX2 175 aaKnown RBP8.46□□□□□ -1.06
CUX1-219ENST00000606749 DZANK1Q9NVP4 752 aa8.46□□□□□ -1.06
CUX1-219ENST00000606749 DBR1Q9UK59 544 aaKnown RBP8.46□□□□□ -1.06
CUX1-219ENST00000606749 GIT1Q9Y2X7 761 aa8.46□□□□□ -1.06
CUX1-219ENST00000606749 TECTAO75443 2155 aa8.46□□□□□ -1.06
CUX1-219ENST00000606749 C2CD4DB7Z1M9 353 aa8.45□□□□□ -1.06
CUX1-219ENST00000606749 USO1O60763 962 aaKnown RBP8.45□□□□□ -1.06
CUX1-219ENST00000606749 SOD2P04179 222 aa8.45□□□□□ -1.06
CUX1-219ENST00000606749 AKAP5P24588 427 aa8.45□□□□□ -1.06
CUX1-219ENST00000606749 RPA1P27694 616 aa8.45□□□□□ -1.06
CUX1-219ENST00000606749 MLH1P40692 756 aa8.45□□□□□ -1.06
CUX1-219ENST00000606749 OR1G1P47890 313 aa8.45□□□□□ -1.06
CUX1-219ENST00000606749 SCNN1GP51170 649 aa8.45□□□□□ -1.06
CUX1-219ENST00000606749 CLCN4P51793 760 aa8.45□□□□□ -1.06
CUX1-219ENST00000606749 NHLH1Q02575 133 aa8.45□□□□□ -1.06
CUX1-219ENST00000606749 KIAA0319Q5VV43 1072 aa8.45□□□□□ -1.06
CUX1-219ENST00000606749 KIAA1841Q6NSI8 718 aa8.45□□□□□ -1.06
CUX1-219ENST00000606749 TMC5Q6UXY8 1006 aa8.45□□□□□ -1.06
CUX1-219ENST00000606749 ALYREFQ86V81 257 aaKnown RBP8.45□□□□□ -1.06
CUX1-219ENST00000606749 CDR2LQ86X02 465 aaPredicted RBP8.45□□□□□ -1.06
CUX1-219ENST00000606749 RNF168Q8IYW5 571 aaPredicted RBP8.45□□□□□ -1.06
CUX1-219ENST00000606749 FBXL6Q8N531 539 aa8.45□□□□□ -1.06
CUX1-219ENST00000606749 C4orf32Q8N8J7 132 aa8.45□□□□□ -1.06
CUX1-219ENST00000606749 KREMEN2Q8NCW0 462 aa8.45□□□□□ -1.06
CUX1-219ENST00000606749 FBXO18Q8NFZ0 1043 aa8.45□□□□□ -1.06
CUX1-219ENST00000606749 ZSCAN31Q96LW9 406 aaPredicted RBP8.45□□□□□ -1.06
CUX1-219ENST00000606749 RPS6KC1Q96S38 1066 aa8.45□□□□□ -1.06
CUX1-219ENST00000606749 KIF2CQ99661 725 aa8.45□□□□□ -1.06
CUX1-219ENST00000606749 APOL6Q9BWW8 343 aa8.45□□□□□ -1.06
CUX1-219ENST00000606749 TRIM6Q9C030 488 aaPredicted RBP8.45□□□□□ -1.06
CUX1-219ENST00000606749 NXF3Q9H4D5 531 aaKnown RBP8.45□□□□□ -1.06
CUX1-219ENST00000606749 MARCH5Q9NX47 278 aa8.45□□□□□ -1.06
CUX1-219ENST00000606749 PRG3Q9Y2Y8 225 aaPredicted RBP8.45□□□□□ -1.06
CUX1-219ENST00000606749 LRRIQ4A6NIV6 560 aa8.44□□□□□ -1.06
CUX1-219ENST00000606749 F8W810 466 aa8.44□□□□□ -1.06
CUX1-219ENST00000606749 C2CD2LO14523 706 aa8.44□□□□□ -1.06
CUX1-219ENST00000606749 NR1I2O75469 434 aa8.44□□□□□ -1.06
CUX1-219ENST00000606749 NPTXRO95502 500 aa8.44□□□□□ -1.06
CUX1-219ENST00000606749 OR52Z1P0C646 297 aa8.44□□□□□ -1.06
CUX1-219ENST00000606749 CYP11B2P19099 503 aa8.44□□□□□ -1.06
CUX1-219ENST00000606749 RBM25P49756 843 aaKnown RBP8.44□□□□□ -1.06
CUX1-219ENST00000606749 HMGN5P82970 282 aaKnown RBP8.44□□□□□ -1.06
CUX1-219ENST00000606749 ORC2Q13416 577 aaPredicted RBP8.44□□□□□ -1.06
CUX1-219ENST00000606749 FAM187BQ17R55 369 aa8.44□□□□□ -1.06
CUX1-219ENST00000606749 CDCA2Q69YH5 1023 aaPredicted RBP8.44□□□□□ -1.06
CUX1-219ENST00000606749 SLC27A1Q6PCB7 646 aa8.44□□□□□ -1.06
CUX1-219ENST00000606749 POTEGQ6S5H5 508 aa8.44□□□□□ -1.06
CUX1-219ENST00000606749 PADI6Q6TGC4 694 aa8.44□□□□□ -1.06
CUX1-219ENST00000606749 GPR149Q86SP6 731 aa8.44□□□□□ -1.06
CUX1-219ENST00000606749 ZBTB33Q86T24 672 aa8.44□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms