RNA–Protein interactions for RNA: ENST00000602557.5

CSMD1-216, Transcript of CUB and Sushi multiple domains 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CSMD1, Length 11,740 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-216ENST00000602557 SLC12A6Q9UHW9 1150 aa9.22□□□□□ -0.93
CSMD1-216ENST00000602557 UGGT1Q9NYU2 1555 aa9.22□□□□□ -0.93
CSMD1-216ENST00000602557 WDR64B1ANS9 1081 aa9.21□□□□□ -0.93
CSMD1-216ENST00000602557 AP3B1O00203 1094 aa9.21□□□□□ -0.93
CSMD1-216ENST00000602557 SNAP25P60880 206 aa9.21□□□□□ -0.93
CSMD1-216ENST00000602557 TAF1BQ53T94 588 aaPredicted RBP9.21□□□□□ -0.93
CSMD1-216ENST00000602557 FAM81BQ96LP2 452 aa9.21□□□□□ -0.93
CSMD1-216ENST00000602557 KANSL2Q9H9L4 492 aa9.21□□□□□ -0.93
CSMD1-216ENST00000602557 SLAIN2Q9P270 581 aa9.21□□□□□ -0.93
CSMD1-216ENST00000602557 SOX11P35716 441 aa9.21□□□□□ -0.93
CSMD1-216ENST00000602557 MAPK11Q15759 364 aa9.21□□□□□ -0.93
CSMD1-216ENST00000602557 TMEM206Q9H813 350 aa9.21□□□□□ -0.93
CSMD1-216ENST00000602557 M0R3G1 203 aa9.21□□□□□ -0.93
CSMD1-216ENST00000602557 XPOTO43592 962 aaKnown RBP9.21□□□□□ -0.93
CSMD1-216ENST00000602557 ZCWPW2Q504Y3 356 aa9.21□□□□□ -0.93
CSMD1-216ENST00000602557 PATL1Q86TB9 770 aaKnown RBP9.21□□□□□ -0.93
CSMD1-216ENST00000602557 MFN1Q8IWA4 741 aa9.21□□□□□ -0.93
CSMD1-216ENST00000602557 PRPF18Q99633 342 aaKnown RBP9.21□□□□□ -0.93
CSMD1-216ENST00000602557 THTPAQ9BU02 230 aa9.21□□□□□ -0.93
CSMD1-216ENST00000602557 LRRC4Q9HBW1 653 aa9.21□□□□□ -0.93
CSMD1-216ENST00000602557 TRIM39Q9HCM9 518 aa9.21□□□□□ -0.93
CSMD1-216ENST00000602557 SERPINB13Q9UIV8 391 aa9.21□□□□□ -0.93
CSMD1-216ENST00000602557 DBR1Q9UK59 544 aaKnown RBP9.21□□□□□ -0.93
CSMD1-216ENST00000602557 DYNC1LI1Q9Y6G9 523 aaKnown RBP9.21□□□□□ -0.93
CSMD1-216ENST00000602557 LGR5O75473 907 aa9.21□□□□□ -0.93
CSMD1-216ENST00000602557 NR1H3Q13133 447 aa9.21□□□□□ -0.93
CSMD1-216ENST00000602557 ITGB3BPQ13352 177 aaPredicted RBP9.21□□□□□ -0.93
CSMD1-216ENST00000602557 KCNB1Q14721 858 aa9.21□□□□□ -0.93
CSMD1-216ENST00000602557 INAQ16352 499 aa9.21□□□□□ -0.93
CSMD1-216ENST00000602557 MTERF2Q49AM1 385 aa9.21□□□□□ -0.93
CSMD1-216ENST00000602557 SLC13A1Q9BZW2 595 aa9.21□□□□□ -0.93
CSMD1-216ENST00000602557 SYNGAP1Q96PV0 1343 aa9.21□□□□□ -0.93
CSMD1-216ENST00000602557 ANXA13P27216 316 aa9.21□□□□□ -0.93
CSMD1-216ENST00000602557 RAB14P61106 215 aa9.21□□□□□ -0.93
CSMD1-216ENST00000602557 BHMT2Q9H2M3 363 aa9.21□□□□□ -0.93
CSMD1-216ENST00000602557 DDX18Q9NVP1 670 aaKnown RBP9.21□□□□□ -0.93
CSMD1-216ENST00000602557 TAF4O00268 1085 aa9.21□□□□□ -0.94
CSMD1-216ENST00000602557 HIC1Q14526 733 aa9.21□□□□□ -0.94
CSMD1-216ENST00000602557 NCAPHQ15003 741 aa9.21□□□□□ -0.94
CSMD1-216ENST00000602557 ZC3H12BQ5HYM0 836 aaKnown RBP9.21□□□□□ -0.94
CSMD1-216ENST00000602557 KIAA1841Q6NSI8 718 aa9.21□□□□□ -0.94
CSMD1-216ENST00000602557 MB21D1Q8N884 522 aa9.21□□□□□ -0.94
CSMD1-216ENST00000602557 FAF2Q96CS3 445 aa9.21□□□□□ -0.94
CSMD1-216ENST00000602557 RCOR1Q9UKL0 485 aa9.21□□□□□ -0.94
CSMD1-216ENST00000602557 ASAP1Q9ULH1 1129 aa9.21□□□□□ -0.94
CSMD1-216ENST00000602557 NFIBO00712 420 aa9.21□□□□□ -0.94
CSMD1-216ENST00000602557 SMNDC1O75940 238 aaKnown RBP eCLIP9.21□□□□□ -0.94
CSMD1-216ENST00000602557 CCDC142Q17RM4 750 aa9.21□□□□□ -0.94
CSMD1-216ENST00000602557 OR6B2Q6IFH4 312 aa9.21□□□□□ -0.94
CSMD1-216ENST00000602557 GPR141Q7Z602 305 aa9.21□□□□□ -0.94
CSMD1-216ENST00000602557 ZCWPW1Q9H0M4 648 aa9.21□□□□□ -0.94
CSMD1-216ENST00000602557 LOC102724428A0A0B4J2F2 783 aa9.21□□□□□ -0.94
CSMD1-216ENST00000602557 PRAMEF22A3QJZ6 481 aa9.21□□□□□ -0.94
CSMD1-216ENST00000602557 SIK1P57059 783 aa9.21□□□□□ -0.94
CSMD1-216ENST00000602557 NSUN2Q08J23 767 aaKnown RBP eCLIP9.21□□□□□ -0.94
CSMD1-216ENST00000602557 E4F1Q66K89 784 aaPredicted RBP9.21□□□□□ -0.94
CSMD1-216ENST00000602557 PPP1R2P3Q6NXS1 205 aa9.21□□□□□ -0.94
CSMD1-216ENST00000602557 HDDC2Q7Z4H3 204 aa9.21□□□□□ -0.94
CSMD1-216ENST00000602557 CCNYL1Q8N7R7 359 aa9.21□□□□□ -0.94
CSMD1-216ENST00000602557 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP9.21□□□□□ -0.94
CSMD1-216ENST00000602557 NLRP4Q96MN2 994 aa9.21□□□□□ -0.94
CSMD1-216ENST00000602557 NUP85Q9BW27 656 aa9.21□□□□□ -0.94
CSMD1-216ENST00000602557 TRIM10Q9UDY6 481 aa9.21□□□□□ -0.94
CSMD1-216ENST00000602557 SESN1Q9Y6P5 492 aa9.21□□□□□ -0.94
CSMD1-216ENST00000602557 PNMA6FA0A0J9YX94 578 aa9.21□□□□□ -0.94
CSMD1-216ENST00000602557 ZNF233A6NK53 670 aa9.21□□□□□ -0.94
CSMD1-216ENST00000602557 CHEK2O96017 543 aa9.21□□□□□ -0.94
CSMD1-216ENST00000602557 ACADSP16219 412 aa9.21□□□□□ -0.94
CSMD1-216ENST00000602557 COPS2P61201 443 aa9.21□□□□□ -0.94
CSMD1-216ENST00000602557 ADGRG1Q9Y653 693 aa9.21□□□□□ -0.94
CSMD1-216ENST00000602557 EFCAB6Q5THR3 1501 aa9.21□□□□□ -0.94
CSMD1-216ENST00000602557 DGKIO75912 1065 aa9.21□□□□□ -0.94
CSMD1-216ENST00000602557 PSAPP07602 524 aa9.21□□□□□ -0.94
CSMD1-216ENST00000602557 SOX5P35711 763 aa9.21□□□□□ -0.94
CSMD1-216ENST00000602557 CAPRIN1Q14444 709 aaKnown RBP9.21□□□□□ -0.94
CSMD1-216ENST00000602557 USPL1Q5W0Q7 1092 aa9.21□□□□□ -0.94
CSMD1-216ENST00000602557 ARAP3Q8WWN8 1544 aa9.2□□□□□ -0.94
CSMD1-216ENST00000602557 MORF4L2Q15014 288 aa9.2□□□□□ -0.94
CSMD1-216ENST00000602557 ERFEQ4G0M1 354 aa9.2□□□□□ -0.94
CSMD1-216ENST00000602557 ADAMTS1Q9UHI8 967 aa9.2□□□□□ -0.94
CSMD1-216ENST00000602557 DEFA1P59665 94 aa9.2□□□□□ -0.94
CSMD1-216ENST00000602557 DEFA3P59666 94 aa9.2□□□□□ -0.94
CSMD1-216ENST00000602557 ARL13BQ3SXY8 428 aa9.2□□□□□ -0.94
CSMD1-216ENST00000602557 PLEKHA7Q6IQ23 1121 aa9.2□□□□□ -0.94
CSMD1-216ENST00000602557 PIGOQ8TEQ8 1089 aa9.2□□□□□ -0.94
CSMD1-216ENST00000602557 SRPRBQ9Y5M8 271 aaKnown RBP9.2□□□□□ -0.94
CSMD1-216ENST00000602557 PLEKHA8P1O95397 391 aa9.2□□□□□ -0.94
CSMD1-216ENST00000602557 MECOMQ03112 1051 aa9.2□□□□□ -0.94
CSMD1-216ENST00000602557 TEDDM1Q5T9Z0 273 aa9.2□□□□□ -0.94
CSMD1-216ENST00000602557 RCSD1Q6JBY9 416 aa9.2□□□□□ -0.94
CSMD1-216ENST00000602557 ARHGAP27Q6ZUM4 889 aa9.2□□□□□ -0.94
CSMD1-216ENST00000602557 TAGAPQ8N103 731 aa9.2□□□□□ -0.94
CSMD1-216ENST00000602557 FAM8A1Q9UBU6 413 aa9.2□□□□□ -0.94
CSMD1-216ENST00000602557 ANAPC7Q9UJX3 599 aa9.2□□□□□ -0.94
CSMD1-216ENST00000602557 GDAQ9Y2T3 454 aa9.2□□□□□ -0.94
CSMD1-216ENST00000602557 RASGRF1Q13972 1273 aa9.2□□□□□ -0.94
CSMD1-216ENST00000602557 NAF1Q96HR8 494 aaKnown RBP9.2□□□□□ -0.94
CSMD1-216ENST00000602557 DBNDD1Q9H9R9 158 aa9.2□□□□□ -0.94
CSMD1-216ENST00000602557 DSEQ9UL01 958 aa9.2□□□□□ -0.94
CSMD1-216ENST00000602557 COPG1Q9Y678 874 aaKnown RBP9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms