RNA–Protein interactions for RNA: ENST00000599543.3

PNKP-213, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 986 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-213ENST00000599543 USO1O60763 962 aaKnown RBP20.79■□□□□ 0.92
PNKP-213ENST00000599543 ALDH2P05091 517 aa20.79■□□□□ 0.92
PNKP-213ENST00000599543 ARL2P36404 184 aa20.79■□□□□ 0.92
PNKP-213ENST00000599543 PTPN14Q15678 1187 aa20.79■□□□□ 0.92
PNKP-213ENST00000599543 ZBTB33Q86T24 672 aa20.79■□□□□ 0.92
PNKP-213ENST00000599543 RIPOR3Q96MK2 946 aa20.79■□□□□ 0.92
PNKP-213ENST00000599543 LLPHQ9BRT6 129 aaKnown RBP20.79■□□□□ 0.92
PNKP-213ENST00000599543 VN1R3Q9BXE9 311 aa20.79■□□□□ 0.92
PNKP-213ENST00000599543 NFKBIZQ9BYH8 718 aa20.79■□□□□ 0.92
PNKP-213ENST00000599543 POLR3FQ9H1D9 316 aaPredicted RBP20.79■□□□□ 0.92
PNKP-213ENST00000599543 KCNH6Q9H252 994 aa20.79■□□□□ 0.92
PNKP-213ENST00000599543 CDH22Q9UJ99 828 aa20.79■□□□□ 0.92
PNKP-213ENST00000599543 MYO10Q9HD67 2058 aa20.79■□□□□ 0.92
PNKP-213ENST00000599543 TMEM221A6NGB7 291 aa20.78■□□□□ 0.92
PNKP-213ENST00000599543 M0R296 226 aa20.78■□□□□ 0.92
PNKP-213ENST00000599543 SSBP05455 408 aaKnown RBP eCLIP20.78■□□□□ 0.92
PNKP-213ENST00000599543 XRCC6P12956 609 aaKnown RBP eCLIP20.78■□□□□ 0.92
PNKP-213ENST00000599543 EPCAMP16422 314 aa20.78■□□□□ 0.92
PNKP-213ENST00000599543 GLRA2P23416 452 aa20.78■□□□□ 0.92
PNKP-213ENST00000599543 MLH1P40692 756 aa20.78■□□□□ 0.92
PNKP-213ENST00000599543 RARS2Q5T160 578 aaKnown RBP20.78■□□□□ 0.92
PNKP-213ENST00000599543 PPFIBP1Q86W92 1011 aa20.78■□□□□ 0.92
PNKP-213ENST00000599543 HACE1Q8IYU2 909 aa20.78■□□□□ 0.92
PNKP-213ENST00000599543 FAM184AQ8NB25 1140 aa20.78■□□□□ 0.92
PNKP-213ENST00000599543 EMILIN2Q9BXX0 1053 aa20.78■□□□□ 0.92
PNKP-213ENST00000599543 CSRNP2Q9H175 543 aa20.78■□□□□ 0.92
PNKP-213ENST00000599543 POMKQ9H5K3 350 aa20.78■□□□□ 0.92
PNKP-213ENST00000599543 TUFT1Q9NNX1 390 aa20.78■□□□□ 0.92
PNKP-213ENST00000599543 HES2Q9Y543 173 aa20.78■□□□□ 0.92
PNKP-213ENST00000599543 ARL5CA6NH57 179 aa20.77■□□□□ 0.92
PNKP-213ENST00000599543 SPDYE4A6NLX3 237 aa20.77■□□□□ 0.92
PNKP-213ENST00000599543 NRP1O14786 923 aa20.77■□□□□ 0.92
PNKP-213ENST00000599543 SPATA31C1P0DKV0 1188 aa20.77■□□□□ 0.92
PNKP-213ENST00000599543 ARF4P18085 180 aaPredicted RBP20.77■□□□□ 0.92
PNKP-213ENST00000599543 HOXD11P31277 338 aaPredicted RBP20.77■□□□□ 0.92
PNKP-213ENST00000599543 MTHFRP42898 656 aa20.77■□□□□ 0.92
PNKP-213ENST00000599543 MCM2P49736 904 aa20.77■□□□□ 0.92
PNKP-213ENST00000599543 SIGLEC14Q08ET2 396 aa20.77■□□□□ 0.92
PNKP-213ENST00000599543 GNL2Q13823 731 aaKnown RBP20.77■□□□□ 0.92
PNKP-213ENST00000599543 AMHR2Q16671 573 aa20.77■□□□□ 0.92
PNKP-213ENST00000599543 PTPN21Q16825 1174 aa20.77■□□□□ 0.92
PNKP-213ENST00000599543 CABP7Q86V35 215 aa20.77■□□□□ 0.92
PNKP-213ENST00000599543 CATSPER3Q86XQ3 398 aa20.77■□□□□ 0.92
PNKP-213ENST00000599543 ERMNQ8TAM6 284 aa20.77■□□□□ 0.92
PNKP-213ENST00000599543 PBXIP1Q96AQ6 731 aa20.77■□□□□ 0.92
PNKP-213ENST00000599543 GAD1Q99259 594 aa20.77■□□□□ 0.92
PNKP-213ENST00000599543 APOL6Q9BWW8 343 aa20.77■□□□□ 0.92
PNKP-213ENST00000599543 FOXD4L1Q9NU39 408 aa20.77■□□□□ 0.92
PNKP-213ENST00000599543 PRG3Q9Y2Y8 225 aaPredicted RBP20.77■□□□□ 0.92
PNKP-213ENST00000599543 DENND4AQ7Z401 1863 aa20.76■□□□□ 0.91
PNKP-213ENST00000599543 A0A087WWV3 80 aa20.76■□□□□ 0.91
PNKP-213ENST00000599543 LRRIQ4A6NIV6 560 aa20.76■□□□□ 0.91
PNKP-213ENST00000599543 INPPL1O15357 1258 aa20.76■□□□□ 0.91
PNKP-213ENST00000599543 OR52Z1P0C646 297 aa20.76■□□□□ 0.91
PNKP-213ENST00000599543 OR1G1P47890 313 aa20.76■□□□□ 0.91
PNKP-213ENST00000599543 ORC2Q13416 577 aaPredicted RBP20.76■□□□□ 0.91
PNKP-213ENST00000599543 MAEAQ7L5Y9 396 aa20.76■□□□□ 0.91
PNKP-213ENST00000599543 BMP8AQ7Z5Y6 402 aa20.76■□□□□ 0.91
PNKP-213ENST00000599543 C12orf76Q8N812 135 aaPredicted RBP20.76■□□□□ 0.91
PNKP-213ENST00000599543 MCPH1Q8NEM0 835 aa20.76■□□□□ 0.91
PNKP-213ENST00000599543 NACC1Q96RE7 527 aa20.76■□□□□ 0.91
PNKP-213ENST00000599543 RNF39Q9H2S5 420 aa20.76■□□□□ 0.91
PNKP-213ENST00000599543 FOXP1Q9H334 677 aaPredicted RBP20.76■□□□□ 0.91
PNKP-213ENST00000599543 MRPL17Q9NRX2 175 aaKnown RBP20.76■□□□□ 0.91
PNKP-213ENST00000599543 C2orf16Q68DN1 1984 aa20.76■□□□□ 0.91
PNKP-213ENST00000599543 B4GALT5O43286 388 aa20.75■□□□□ 0.91
PNKP-213ENST00000599543 MED24O75448 989 aa20.75■□□□□ 0.91
PNKP-213ENST00000599543 NR1I2O75469 434 aa20.75■□□□□ 0.91
PNKP-213ENST00000599543 URODP06132 367 aa20.75■□□□□ 0.91
PNKP-213ENST00000599543 WEE2P0C1S8 567 aa20.75■□□□□ 0.91
PNKP-213ENST00000599543 KLRC2P26717 231 aa20.75■□□□□ 0.91
PNKP-213ENST00000599543 SCNN1GP51170 649 aa20.75■□□□□ 0.91
PNKP-213ENST00000599543 HMGN5P82970 282 aaKnown RBP20.75■□□□□ 0.91
PNKP-213ENST00000599543 ZNF174Q15697 407 aa20.75■□□□□ 0.91
PNKP-213ENST00000599543 ATAT1Q5SQI0 421 aa20.75■□□□□ 0.91
PNKP-213ENST00000599543 KIAA1841Q6NSI8 718 aa20.75■□□□□ 0.91
PNKP-213ENST00000599543 SLC27A1Q6PCB7 646 aa20.75■□□□□ 0.91
PNKP-213ENST00000599543 SUGP1Q8IWZ8 645 aaKnown RBP20.75■□□□□ 0.91
PNKP-213ENST00000599543 COLGALT2Q8IYK4 626 aa20.75■□□□□ 0.91
PNKP-213ENST00000599543 SLC22A17Q8WUG5 538 aa20.75■□□□□ 0.91
PNKP-213ENST00000599543 FBXL18Q96ME1 805 aa20.75■□□□□ 0.91
PNKP-213ENST00000599543 ZFP42Q96MM3 310 aa20.75■□□□□ 0.91
PNKP-213ENST00000599543 POLR3CQ9BUI4 534 aaPredicted RBP20.75■□□□□ 0.91
PNKP-213ENST00000599543 NXF3Q9H4D5 531 aaKnown RBP20.75■□□□□ 0.91
PNKP-213ENST00000599543 SFXN1Q9H9B4 322 aa20.75■□□□□ 0.91
PNKP-213ENST00000599543 GPRC5CQ9NQ84 441 aa20.75■□□□□ 0.91
PNKP-213ENST00000599543 DBR1Q9UK59 544 aaKnown RBP20.75■□□□□ 0.91
PNKP-213ENST00000599543 GIT1Q9Y2X7 761 aa20.75■□□□□ 0.91
PNKP-213ENST00000599543 KMT2EQ8IZD2 1858 aa20.75■□□□□ 0.91
PNKP-213ENST00000599543 C2CD4DB7Z1M9 353 aa20.74■□□□□ 0.91
PNKP-213ENST00000599543 SOD2P04179 222 aa20.74■□□□□ 0.91
PNKP-213ENST00000599543 CNPP09543 421 aaKnown RBP20.74■□□□□ 0.91
PNKP-213ENST00000599543 GJB2P29033 226 aa20.74■□□□□ 0.91
PNKP-213ENST00000599543 PLXNA3P51805 1871 aa20.74■□□□□ 0.91
PNKP-213ENST00000599543 POTEGQ6S5H5 508 aa20.74■□□□□ 0.91
PNKP-213ENST00000599543 ZBTB8OSQ8IWT0 167 aa20.74■□□□□ 0.91
PNKP-213ENST00000599543 KLHL5Q96PQ7 755 aa20.74■□□□□ 0.91
PNKP-213ENST00000599543 MARCH5Q9NX47 278 aa20.74■□□□□ 0.91
PNKP-213ENST00000599543 SSX2IPQ9Y2D8 614 aa20.74■□□□□ 0.91
PNKP-213ENST00000599543 A0A1B0GUA9 196 aa20.73■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms