RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 LRRN2O75325 713 aa11.36□□□□□ -0.59
TRIM28-210ENST00000597618 MAFO75444 373 aaPredicted RBP11.36□□□□□ -0.59
TRIM28-210ENST00000597618 NR1I2O75469 434 aa11.36□□□□□ -0.59
TRIM28-210ENST00000597618 EFEMP2O95967 443 aa11.36□□□□□ -0.59
TRIM28-210ENST00000597618 MYBP10242 640 aa11.36□□□□□ -0.59
TRIM28-210ENST00000597618 FSHRP23945 695 aa11.36□□□□□ -0.59
TRIM28-210ENST00000597618 OR1G1P47890 313 aa11.36□□□□□ -0.59
TRIM28-210ENST00000597618 CREMQ03060 361 aa11.36□□□□□ -0.59
TRIM28-210ENST00000597618 PRKCQQ04759 706 aa11.36□□□□□ -0.59
TRIM28-210ENST00000597618 NECTIN1Q15223 517 aa11.36□□□□□ -0.59
TRIM28-210ENST00000597618 TAS1R1Q7RTX1 841 aa11.36□□□□□ -0.59
TRIM28-210ENST00000597618 MIER3Q7Z3K6 550 aa11.36□□□□□ -0.59
TRIM28-210ENST00000597618 KSR1Q8IVT5 923 aa11.36□□□□□ -0.59
TRIM28-210ENST00000597618 COLGALT2Q8IYK4 626 aa11.36□□□□□ -0.59
TRIM28-210ENST00000597618 GPR65Q8IYL9 337 aa11.36□□□□□ -0.59
TRIM28-210ENST00000597618 CNNM3Q8NE01 707 aa11.36□□□□□ -0.59
TRIM28-210ENST00000597618 BICD2Q8TD16 824 aa11.36□□□□□ -0.59
TRIM28-210ENST00000597618 CCDC136Q96JN2 1154 aa11.36□□□□□ -0.59
TRIM28-210ENST00000597618 RTKNQ9BST9 563 aa11.36□□□□□ -0.59
TRIM28-210ENST00000597618 DDX23Q9BUQ8 820 aaKnown RBP11.36□□□□□ -0.59
TRIM28-210ENST00000597618 OSBPL6Q9BZF3 934 aa11.36□□□□□ -0.59
TRIM28-210ENST00000597618 EPC1Q9H2F5 836 aa11.36□□□□□ -0.59
TRIM28-210ENST00000597618 IFT122Q9HBG6 1241 aa11.36□□□□□ -0.59
TRIM28-210ENST00000597618 BRPF3Q9ULD4 1205 aa11.36□□□□□ -0.59
TRIM28-210ENST00000597618 SMG5Q9UPR3 1016 aaKnown RBP11.36□□□□□ -0.59
TRIM28-210ENST00000597618 KLF18A0A0U1RQI7 1052 aa11.35□□□□□ -0.59
TRIM28-210ENST00000597618 CCDC196A0A1B0GTZ2 297 aa11.35□□□□□ -0.59
TRIM28-210ENST00000597618 TMEM150BA6NC51 233 aa11.35□□□□□ -0.59
TRIM28-210ENST00000597618 ADAMTS3O15072 1205 aa11.35□□□□□ -0.59
TRIM28-210ENST00000597618 TGM5O43548 720 aa11.35□□□□□ -0.59
TRIM28-210ENST00000597618 GAS2O43903 313 aaKnown RBP11.35□□□□□ -0.59
TRIM28-210ENST00000597618 SPATA31D3P0C874 917 aa11.35□□□□□ -0.59
TRIM28-210ENST00000597618 NCLP19338 710 aaKnown RBP11.35□□□□□ -0.59
TRIM28-210ENST00000597618 CDC27P30260 824 aa11.35□□□□□ -0.59
TRIM28-210ENST00000597618 GPC5P78333 572 aa11.35□□□□□ -0.59
TRIM28-210ENST00000597618 PFKPQ01813 784 aa11.35□□□□□ -0.59
TRIM28-210ENST00000597618 CSTF1Q05048 431 aaKnown RBP11.35□□□□□ -0.59
TRIM28-210ENST00000597618 SNW1Q13573 536 aaKnown RBP11.35□□□□□ -0.59
TRIM28-210ENST00000597618 UBXN2BQ14CS0 331 aa11.35□□□□□ -0.59
TRIM28-210ENST00000597618 MLF2Q15773 248 aaPredicted RBP11.35□□□□□ -0.59
TRIM28-210ENST00000597618 ST3GAL2Q16842 350 aa11.35□□□□□ -0.59
TRIM28-210ENST00000597618 RNF20Q5VTR2 975 aa11.35□□□□□ -0.59
TRIM28-210ENST00000597618 RSPO2Q6UXX9 243 aaPredicted RBP11.35□□□□□ -0.59
TRIM28-210ENST00000597618 SPATA31D4Q6ZUB0 917 aa11.35□□□□□ -0.59
TRIM28-210ENST00000597618 MTSS1LQ765P7 747 aa11.35□□□□□ -0.59
TRIM28-210ENST00000597618 SRGAP1Q7Z6B7 1085 aa11.35□□□□□ -0.59
TRIM28-210ENST00000597618 PALB2Q86YC2 1186 aa11.35□□□□□ -0.59
TRIM28-210ENST00000597618 ZBTB44Q8NCP5 570 aa11.35□□□□□ -0.59
TRIM28-210ENST00000597618 FGF14Q92915 247 aa11.35□□□□□ -0.59
TRIM28-210ENST00000597618 SH2D3AQ9BRG2 576 aa11.35□□□□□ -0.59
TRIM28-210ENST00000597618 CHST7Q9NS84 486 aa11.35□□□□□ -0.59
TRIM28-210ENST00000597618 FAM217BQ9NTX9 383 aaPredicted RBP11.35□□□□□ -0.59
TRIM28-210ENST00000597618 ZSCAN32Q9NX65 697 aa11.35□□□□□ -0.59
TRIM28-210ENST00000597618 FNIP2Q9P278 1114 aa11.35□□□□□ -0.59
TRIM28-210ENST00000597618 CDH7Q9ULB5 785 aa11.35□□□□□ -0.59
TRIM28-210ENST00000597618 COL4A3BPQ9Y5P4 624 aa11.35□□□□□ -0.59
TRIM28-210ENST00000597618 ARL5CA6NH57 179 aa11.34□□□□□ -0.59
TRIM28-210ENST00000597618 DDX11L8A8MPP1 907 aa11.34□□□□□ -0.59
TRIM28-210ENST00000597618 ZMYND10O75800 440 aa11.34□□□□□ -0.59
TRIM28-210ENST00000597618 PSMD10O75832 226 aa11.34□□□□□ -0.59
TRIM28-210ENST00000597618 STBD1O95210 358 aa11.34□□□□□ -0.59
TRIM28-210ENST00000597618 ITGA4P13612 1032 aa11.34□□□□□ -0.59
TRIM28-210ENST00000597618 HOXA11P31270 313 aaPredicted RBP11.34□□□□□ -0.59
TRIM28-210ENST00000597618 USP11P51784 963 aa11.34□□□□□ -0.59
TRIM28-210ENST00000597618 DSC1Q08554 894 aa11.34□□□□□ -0.59
TRIM28-210ENST00000597618 USP41Q3LFD5 358 aa11.34□□□□□ -0.59
TRIM28-210ENST00000597618 UBXN11Q5T124 520 aa11.34□□□□□ -0.59
TRIM28-210ENST00000597618 PARM1Q6UWI2 310 aa11.34□□□□□ -0.59
TRIM28-210ENST00000597618 DHX32Q7L7V1 743 aaKnown RBP11.34□□□□□ -0.59
TRIM28-210ENST00000597618 EXOC8Q8IYI6 725 aa11.34□□□□□ -0.59
TRIM28-210ENST00000597618 ST13P5Q8NFI4 369 aaPredicted RBP11.34□□□□□ -0.59
TRIM28-210ENST00000597618 CCDC148Q8NFR7 591 aa11.34□□□□□ -0.59
TRIM28-210ENST00000597618 SLC7A3Q8WY07 619 aa11.34□□□□□ -0.59
TRIM28-210ENST00000597618 COLEC11Q9BWP8 271 aa11.34□□□□□ -0.59
TRIM28-210ENST00000597618 ANO2Q9NQ90 1003 aa11.34□□□□□ -0.59
TRIM28-210ENST00000597618 GMEB2Q9UKD1 530 aa11.34□□□□□ -0.59
TRIM28-210ENST00000597618 USP18Q9UMW8 372 aa11.34□□□□□ -0.59
TRIM28-210ENST00000597618 FAM170BA6NMN3 283 aa11.33□□□□□ -0.6
TRIM28-210ENST00000597618 TBC1D4O60343 1298 aa11.33□□□□□ -0.6
TRIM28-210ENST00000597618 LILRB5O75023 590 aa11.33□□□□□ -0.6
TRIM28-210ENST00000597618 ADRB1P08588 477 aa11.33□□□□□ -0.6
TRIM28-210ENST00000597618 MLH1P40692 756 aa11.33□□□□□ -0.6
TRIM28-210ENST00000597618 PSMC5P62195 406 aa11.33□□□□□ -0.6
TRIM28-210ENST00000597618 EXOSC10Q01780 885 aaKnown RBP11.33□□□□□ -0.6
TRIM28-210ENST00000597618 Q4G0T1 1027 aa11.33□□□□□ -0.6
TRIM28-210ENST00000597618 SLC44A4Q53GD3 710 aa11.33□□□□□ -0.6
TRIM28-210ENST00000597618 ZBTB41Q5SVQ8 909 aa11.33□□□□□ -0.6
TRIM28-210ENST00000597618 LIN9Q5TKA1 542 aa11.33□□□□□ -0.6
TRIM28-210ENST00000597618 LILRA6Q6PI73 481 aa11.33□□□□□ -0.6
TRIM28-210ENST00000597618 ANO5Q75V66 913 aa11.33□□□□□ -0.6
TRIM28-210ENST00000597618 SMG8Q8ND04 991 aaKnown RBP11.33□□□□□ -0.6
TRIM28-210ENST00000597618 PSPC1Q8WXF1 523 aaKnown RBP11.33□□□□□ -0.6
TRIM28-210ENST00000597618 NELL1Q92832 810 aa11.33□□□□□ -0.6
TRIM28-210ENST00000597618 CCDC51Q96ER9 411 aa11.33□□□□□ -0.6
TRIM28-210ENST00000597618 B3GALT6Q96L58 329 aa11.33□□□□□ -0.6
TRIM28-210ENST00000597618 TCEANC2Q96MN5 208 aa11.33□□□□□ -0.6
TRIM28-210ENST00000597618 MBOAT7Q96N66 472 aa11.33□□□□□ -0.6
TRIM28-210ENST00000597618 GAD1Q99259 594 aa11.33□□□□□ -0.6
TRIM28-210ENST00000597618 ESYT1Q9BSJ8 1104 aa11.33□□□□□ -0.6
TRIM28-210ENST00000597618 RPP25Q9BUL9 199 aaKnown RBP11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms