RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 PPP3CAQ08209 521 aa16.4■□□□□ 0.22
UPF1-204ENST00000596842 NUGGCQ68CJ6 796 aa16.4■□□□□ 0.22
UPF1-204ENST00000596842 DUPD1Q68J44 220 aa16.4■□□□□ 0.22
UPF1-204ENST00000596842 C6orf89Q6UWU4 347 aa16.4■□□□□ 0.22
UPF1-204ENST00000596842 OTOP1Q7RTM1 612 aa16.4■□□□□ 0.22
UPF1-204ENST00000596842 SLC47A2Q86VL8 602 aa16.4■□□□□ 0.22
UPF1-204ENST00000596842 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP16.4■□□□□ 0.222e-7■■■■■ 64.2
UPF1-204ENST00000596842 NUP85Q9BW27 656 aa16.4■□□□□ 0.22
UPF1-204ENST00000596842 TAOK3Q9H2K8 898 aa16.4■□□□□ 0.22
UPF1-204ENST00000596842 CYP3A7-CYP3A51PA0A087WV96 503 aa16.4■□□□□ 0.22
UPF1-204ENST00000596842 CYP3A7P24462 503 aa16.4■□□□□ 0.22
UPF1-204ENST00000596842 BYSLQ13895 437 aaKnown RBP16.4■□□□□ 0.22
UPF1-204ENST00000596842 C1orf186Q6ZWK4 172 aa16.4■□□□□ 0.22
UPF1-204ENST00000596842 MIGA2Q7L4E1 593 aa16.4■□□□□ 0.22
UPF1-204ENST00000596842 SIAH1Q8IUQ4 282 aa16.4■□□□□ 0.22
UPF1-204ENST00000596842 YIPF3Q9GZM5 350 aa16.4■□□□□ 0.22
UPF1-204ENST00000596842 ACTR5Q9H9F9 607 aaPredicted RBP16.4■□□□□ 0.22
UPF1-204ENST00000596842 FGFR1OP2Q9NVK5 253 aa16.4■□□□□ 0.22
UPF1-204ENST00000596842 MTUS1Q9ULD2 1270 aa16.4■□□□□ 0.22
UPF1-204ENST00000596842 ZMYM2Q9UBW7 1377 aa16.4■□□□□ 0.22
UPF1-204ENST00000596842 KDM4FA0A1W2PPD8 638 aa16.4■□□□□ 0.22
UPF1-204ENST00000596842 EIF3BP55884 814 aaKnown RBP16.4■□□□□ 0.22
UPF1-204ENST00000596842 GPC5P78333 572 aa16.4■□□□□ 0.22
UPF1-204ENST00000596842 ZNF513Q8N8E2 541 aaPredicted RBP16.4■□□□□ 0.22
UPF1-204ENST00000596842 POLR2MP0CAP2 368 aa16.39■□□□□ 0.21
UPF1-204ENST00000596842 CDC25CP30307 473 aa16.39■□□□□ 0.21
UPF1-204ENST00000596842 STAT2P52630 851 aa16.39■□□□□ 0.21
UPF1-204ENST00000596842 LLGL2Q6P1M3 1020 aa16.39■□□□□ 0.21
UPF1-204ENST00000596842 SH3BP5LQ7L8J4 393 aa16.39■□□□□ 0.21
UPF1-204ENST00000596842 DHX38Q92620 1227 aaKnown RBP16.39■□□□□ 0.21
UPF1-204ENST00000596842 RSRC1Q96IZ7 334 aaKnown RBP16.39■□□□□ 0.21
UPF1-204ENST00000596842 FAM129AQ9BZQ8 928 aa16.39■□□□□ 0.21
UPF1-204ENST00000596842 UNC45AQ9H3U1 944 aa16.39■□□□□ 0.21
UPF1-204ENST00000596842 ABCF3Q9NUQ8 709 aa16.39■□□□□ 0.21
UPF1-204ENST00000596842 USTQ9Y2C2 406 aa16.39■□□□□ 0.21
UPF1-204ENST00000596842 L3MBTL1Q9Y468 752 aa16.39■□□□□ 0.21
UPF1-204ENST00000596842 LAMB2P55268 1798 aa16.39■□□□□ 0.21
UPF1-204ENST00000596842 A0A0A6YYK5 440 aaPredicted RBP16.39■□□□□ 0.21
UPF1-204ENST00000596842 SLC16A4O15374 487 aa16.39■□□□□ 0.21
UPF1-204ENST00000596842 Q4G0T1 1027 aa16.39■□□□□ 0.21
UPF1-204ENST00000596842 FOXR2Q6PJQ5 311 aa16.39■□□□□ 0.21
UPF1-204ENST00000596842 PADI6Q6TGC4 694 aa16.39■□□□□ 0.21
UPF1-204ENST00000596842 YTHDF3Q7Z739 585 aaKnown RBP16.39■□□□□ 0.21
UPF1-204ENST00000596842 CNOT10Q9H9A5 744 aaKnown RBP16.39■□□□□ 0.21
UPF1-204ENST00000596842 TCP11X1B4DZS4 312 aa16.39■□□□□ 0.21
UPF1-204ENST00000596842 PHF2O75151 1096 aa16.39■□□□□ 0.21
UPF1-204ENST00000596842 PPFIA2O75334 1257 aa16.39■□□□□ 0.21
UPF1-204ENST00000596842 VAMP7P51809 220 aa16.39■□□□□ 0.21
UPF1-204ENST00000596842 PEX3P56589 373 aa16.39■□□□□ 0.21
UPF1-204ENST00000596842 PPATQ06203 517 aa16.39■□□□□ 0.21
UPF1-204ENST00000596842 ERMARDQ5T6L9 678 aa16.39■□□□□ 0.21
UPF1-204ENST00000596842 TMEM179Q6ZVK1 233 aa16.39■□□□□ 0.21
UPF1-204ENST00000596842 ZDHHC14Q8IZN3 488 aa16.39■□□□□ 0.21
UPF1-204ENST00000596842 ZNF564Q8TBZ8 553 aaPredicted RBP16.39■□□□□ 0.21
UPF1-204ENST00000596842 NACC1Q96RE7 527 aa16.39■□□□□ 0.21
UPF1-204ENST00000596842 FAM198AQ9UFP1 575 aa16.39■□□□□ 0.21
UPF1-204ENST00000596842 TNRC6CQ9HCJ0 1690 aaKnown RBP16.39■□□□□ 0.21
UPF1-204ENST00000596842 CCT8L1PA6NM43 557 aa16.38■□□□□ 0.21
UPF1-204ENST00000596842 MXI1P50539 228 aa16.38■□□□□ 0.21
UPF1-204ENST00000596842 PRELPP51888 382 aa16.38■□□□□ 0.21
UPF1-204ENST00000596842 CRY2Q49AN0 593 aa16.38■□□□□ 0.21
UPF1-204ENST00000596842 SGO2Q562F6 1265 aa16.38■□□□□ 0.21
UPF1-204ENST00000596842 LMBRD2Q68DH5 695 aaPredicted RBP16.38■□□□□ 0.21
UPF1-204ENST00000596842 C15orf52Q6ZUT6 534 aaKnown RBP16.38■□□□□ 0.21
UPF1-204ENST00000596842 PRUNE1Q86TP1 453 aa16.38■□□□□ 0.21
UPF1-204ENST00000596842 TAB3Q8N5C8 712 aaPredicted RBP16.38■□□□□ 0.21
UPF1-204ENST00000596842 KIF9Q9HAQ2 790 aa16.38■□□□□ 0.21
UPF1-204ENST00000596842 OLFML3Q9NRN5 406 aa16.38■□□□□ 0.21
UPF1-204ENST00000596842 SWT1Q5T5J6 900 aaKnown RBP16.38■□□□□ 0.21
UPF1-204ENST00000596842 CYP4F22Q6NT55 531 aa16.38■□□□□ 0.21
UPF1-204ENST00000596842 ZDHHC24Q6UX98 284 aa16.38■□□□□ 0.21
UPF1-204ENST00000596842 FAM47EQ6ZV65 393 aa16.38■□□□□ 0.21
UPF1-204ENST00000596842 MIER3Q7Z3K6 550 aa16.38■□□□□ 0.21
UPF1-204ENST00000596842 HSD17B14Q9BPX1 270 aa16.38■□□□□ 0.21
UPF1-204ENST00000596842 PI4K2AQ9BTU6 479 aa16.38■□□□□ 0.21
UPF1-204ENST00000596842 TOPORSQ9NS56 1045 aaPredicted RBP16.38■□□□□ 0.21
UPF1-204ENST00000596842 ZDHHC18Q9NUE0 388 aa16.38■□□□□ 0.21
UPF1-204ENST00000596842 NYAP2Q9P242 653 aa16.38■□□□□ 0.21
UPF1-204ENST00000596842 TRPC6Q9Y210 931 aa16.38■□□□□ 0.21
UPF1-204ENST00000596842 IPO5O00410 1097 aaKnown RBP16.38■□□□□ 0.21
UPF1-204ENST00000596842 AP1G2O75843 785 aa16.38■□□□□ 0.21
UPF1-204ENST00000596842 RASSF9O75901 435 aa16.38■□□□□ 0.21
UPF1-204ENST00000596842 KYNUQ16719 465 aa16.38■□□□□ 0.21
UPF1-204ENST00000596842 GRIPAP1Q4V328 841 aa16.38■□□□□ 0.21
UPF1-204ENST00000596842 RHOT2Q8IXI1 618 aa16.38■□□□□ 0.21
UPF1-204ENST00000596842 ZC3H3Q8IXZ2 948 aaKnown RBP16.38■□□□□ 0.21
UPF1-204ENST00000596842 ARHGEF2Q92974 986 aaKnown RBP16.38■□□□□ 0.21
UPF1-204ENST00000596842 PCDHB18PQ96TA0 734 aa16.38■□□□□ 0.21
UPF1-204ENST00000596842 ZSWIM1Q9BR11 485 aa16.38■□□□□ 0.21
UPF1-204ENST00000596842 GPR88Q9GZN0 384 aa16.38■□□□□ 0.21
UPF1-204ENST00000596842 USP20Q9Y2K6 914 aa16.38■□□□□ 0.21
UPF1-204ENST00000596842 SYNGAP1Q96PV0 1343 aa16.37■□□□□ 0.21
UPF1-204ENST00000596842 TBX3O15119 743 aa16.37■□□□□ 0.21
UPF1-204ENST00000596842 VCAM1P19320 739 aa16.37■□□□□ 0.21
UPF1-204ENST00000596842 HOXA7P31268 230 aaPredicted RBP16.37■□□□□ 0.21
UPF1-204ENST00000596842 POU5F1Q01860 360 aaKnown RBP16.37■□□□□ 0.21
UPF1-204ENST00000596842 FAM102BQ5T8I3 360 aa16.37■□□□□ 0.21
UPF1-204ENST00000596842 RNF207Q6ZRF8 634 aa16.37■□□□□ 0.21
UPF1-204ENST00000596842 POLR3CQ9BUI4 534 aaPredicted RBP16.37■□□□□ 0.21
UPF1-204ENST00000596842 TRIM7Q9C029 511 aa16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms