RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 SNX17Q15036 470 aa16.02■□□□□ 0.15
VRK3-212ENST00000596814 AMHR2Q16671 573 aa16.02■□□□□ 0.15
VRK3-212ENST00000596814 SLFN12LQ6IEE8 588 aa16.02■□□□□ 0.15
VRK3-212ENST00000596814 APTXQ7Z2E3 356 aaKnown RBP16.02■□□□□ 0.15
VRK3-212ENST00000596814 ACO2Q99798 780 aaKnown RBP16.02■□□□□ 0.15
VRK3-212ENST00000596814 MKNK1Q9BUB5 465 aa16.02■□□□□ 0.15
VRK3-212ENST00000596814 CELF4Q9BZC1 486 aaKnown RBP16.02■□□□□ 0.15
VRK3-212ENST00000596814 SENP6Q9GZR1 1112 aaPredicted RBP16.02■□□□□ 0.15
VRK3-212ENST00000596814 MCOLN1Q9GZU1 580 aa16.02■□□□□ 0.15
VRK3-212ENST00000596814 CDHR5Q9HBB8 845 aa16.02■□□□□ 0.15
VRK3-212ENST00000596814 TAB2Q9NYJ8 693 aa16.02■□□□□ 0.15
VRK3-212ENST00000596814 CDY2AQ9Y6F7 541 aa16.02■□□□□ 0.15
VRK3-212ENST00000596814 STYXL1Q9Y6J8 313 aa16.02■□□□□ 0.15
VRK3-212ENST00000596814 CBFA2T2O43439 604 aa16.01■□□□□ 0.15
VRK3-212ENST00000596814 TOM1L1O75674 476 aa16.01■□□□□ 0.15
VRK3-212ENST00000596814 TPM2P07951 284 aa16.01■□□□□ 0.15
VRK3-212ENST00000596814 CTSHP09668 335 aa16.01■□□□□ 0.15
VRK3-212ENST00000596814 SFPQP23246 707 aaKnown RBP eCLIP16.01■□□□□ 0.15
VRK3-212ENST00000596814 EIF4BP23588 611 aaKnown RBP16.01■□□□□ 0.15
VRK3-212ENST00000596814 PSMC2P35998 433 aaKnown RBP16.01■□□□□ 0.15
VRK3-212ENST00000596814 THPOP40225 353 aa16.01■□□□□ 0.15
VRK3-212ENST00000596814 MATR3P43243 847 aaKnown RBP eCLIP16.01■□□□□ 0.15
VRK3-212ENST00000596814 CDK7P50613 346 aa16.01■□□□□ 0.15
VRK3-212ENST00000596814 ZNF75DP51815 510 aa16.01■□□□□ 0.15
VRK3-212ENST00000596814 COPB1P53618 953 aaKnown RBP16.01■□□□□ 0.15
VRK3-212ENST00000596814 PCBP1Q15365 356 aaKnown RBP eCLIP16.01■□□□□ 0.15
VRK3-212ENST00000596814 ATF7IP2Q5U623 682 aa16.01■□□□□ 0.15
VRK3-212ENST00000596814 TSHZ1Q6ZSZ6 1077 aa16.01■□□□□ 0.15
VRK3-212ENST00000596814 FRMD5Q7Z6J6 570 aa16.01■□□□□ 0.15
VRK3-212ENST00000596814 FAM186BQ8IYM0 893 aa16.01■□□□□ 0.15
VRK3-212ENST00000596814 ANKLE1Q8NAG6 615 aa16.01■□□□□ 0.15
VRK3-212ENST00000596814 DHX38Q92620 1227 aaKnown RBP16.01■□□□□ 0.15
VRK3-212ENST00000596814 TUBGCP2Q9BSJ2 902 aa16.01■□□□□ 0.15
VRK3-212ENST00000596814 XPO4Q9C0E2 1151 aaKnown RBP16.01■□□□□ 0.15
VRK3-212ENST00000596814 TRPV6Q9H1D0 765 aa16.01■□□□□ 0.15
VRK3-212ENST00000596814 KIAA0391O15091 583 aaKnown RBP16■□□□□ 0.15
VRK3-212ENST00000596814 CLDN3O15551 220 aa16■□□□□ 0.15
VRK3-212ENST00000596814 TSPAN1O60635 241 aa16■□□□□ 0.15
VRK3-212ENST00000596814 TPM3P06753 285 aa16■□□□□ 0.15
VRK3-212ENST00000596814 PRKCSHP14314 528 aaPredicted RBP16■□□□□ 0.15
VRK3-212ENST00000596814 MGAT3Q09327 533 aa16■□□□□ 0.15
VRK3-212ENST00000596814 FILIP1LQ4L180 1135 aa16■□□□□ 0.15
VRK3-212ENST00000596814 CATSPER4Q7RTX7 472 aa16■□□□□ 0.15
VRK3-212ENST00000596814 TMEM40Q8WWA1 233 aa16■□□□□ 0.15
VRK3-212ENST00000596814 SAAL1Q96ER3 474 aa16■□□□□ 0.15
VRK3-212ENST00000596814 ZBTB45Q96K62 511 aaPredicted RBP16■□□□□ 0.15
VRK3-212ENST00000596814 TMEM106CQ9BVX2 250 aa16■□□□□ 0.15
VRK3-212ENST00000596814 METTL14Q9HCE5 456 aaKnown RBP16■□□□□ 0.15
VRK3-212ENST00000596814 ARMCX3Q9UH62 379 aaPredicted RBP16■□□□□ 0.15
VRK3-212ENST00000596814 MROH7Q68CQ1 1323 aa16■□□□□ 0.15
VRK3-212ENST00000596814 A0A0B4J269 797 aa15.99■□□□□ 0.15
VRK3-212ENST00000596814 A0A1B0GTH6 734 aa15.99■□□□□ 0.15
VRK3-212ENST00000596814 LRRC10BA6NIK2 292 aa15.99■□□□□ 0.15
VRK3-212ENST00000596814 CAND2O75155 1236 aa15.99■□□□□ 0.15
VRK3-212ENST00000596814 FGFR4P22455 802 aa15.99■□□□□ 0.15
VRK3-212ENST00000596814 MAN2A1Q16706 1144 aa15.99■□□□□ 0.15
VRK3-212ENST00000596814 TRIM71Q2Q1W2 868 aaKnown RBP15.99■□□□□ 0.15
VRK3-212ENST00000596814 ZNF568Q3ZCX4 644 aa15.99■□□□□ 0.15
VRK3-212ENST00000596814 MPZL3Q6UWV2 235 aa15.99■□□□□ 0.15
VRK3-212ENST00000596814 FAM126BQ8IXS8 530 aa15.99■□□□□ 0.15
VRK3-212ENST00000596814 GPD1LQ8N335 351 aa15.99■□□□□ 0.15
VRK3-212ENST00000596814 NAP1L5Q96NT1 182 aaPredicted RBP15.99■□□□□ 0.15
VRK3-212ENST00000596814 TCHPQ9BT92 498 aa15.99■□□□□ 0.15
VRK3-212ENST00000596814 MSTO1Q9BUK6 570 aa15.99■□□□□ 0.15
VRK3-212ENST00000596814 NOC4LQ9BVI4 516 aaKnown RBP15.99■□□□□ 0.15
VRK3-212ENST00000596814 VPS16Q9H269 839 aa15.99■□□□□ 0.15
VRK3-212ENST00000596814 TNFSF13BQ9Y275 285 aa15.99■□□□□ 0.15
VRK3-212ENST00000596814 KIAA0100Q14667 2235 aaKnown RBP15.99■□□□□ 0.15
VRK3-212ENST00000596814 DNAH12Q6ZR08 3092 aa15.99■□□□□ 0.15
VRK3-212ENST00000596814 GOLGA8IPA6NC78 632 aa15.99■□□□□ 0.15
VRK3-212ENST00000596814 GOLGA8JA6NMD2 632 aa15.99■□□□□ 0.15
VRK3-212ENST00000596814 N4BP3O15049 544 aa15.99■□□□□ 0.15
VRK3-212ENST00000596814 MAPK13O15264 365 aa15.99■□□□□ 0.15
VRK3-212ENST00000596814 HARSP12081 509 aaKnown RBP15.99■□□□□ 0.15
VRK3-212ENST00000596814 CAPN2P17655 700 aa15.99■□□□□ 0.15
VRK3-212ENST00000596814 ARF4P18085 180 aaPredicted RBP15.99■□□□□ 0.15
VRK3-212ENST00000596814 PROZP22891 400 aa15.99■□□□□ 0.15
VRK3-212ENST00000596814 MCL1Q07820 350 aa15.99■□□□□ 0.15
VRK3-212ENST00000596814 HSP90AA2PQ14568 343 aaPredicted RBP15.99■□□□□ 0.15
VRK3-212ENST00000596814 NOLC1Q14978 699 aaKnown RBP eCLIP15.99■□□□□ 0.15
VRK3-212ENST00000596814 TRIM59Q8IWR1 403 aa15.99■□□□□ 0.15
VRK3-212ENST00000596814 RDH13Q8NBN7 331 aa15.99■□□□□ 0.15
VRK3-212ENST00000596814 ZSWIM2Q8NEG5 633 aa15.99■□□□□ 0.15
VRK3-212ENST00000596814 DIS3LQ8TF46 1054 aaKnown RBP15.99■□□□□ 0.15
VRK3-212ENST00000596814 MRFAP1L1Q96HT8 127 aa15.99■□□□□ 0.15
VRK3-212ENST00000596814 CPB2Q96IY4 423 aa15.99■□□□□ 0.15
VRK3-212ENST00000596814 FBXL18Q96ME1 805 aa15.99■□□□□ 0.15
VRK3-212ENST00000596814 HAPLN2Q9GZV7 340 aa15.99■□□□□ 0.15
VRK3-212ENST00000596814 AGO2Q9UKV8 859 aaKnown RBP15.99■□□□□ 0.15
VRK3-212ENST00000596814 PES1O00541 588 aaKnown RBP15.98■□□□□ 0.15
VRK3-212ENST00000596814 ABLIM1O14639 778 aa15.98■□□□□ 0.15
VRK3-212ENST00000596814 EXTL3O43909 919 aa15.98■□□□□ 0.15
VRK3-212ENST00000596814 LDHAP00338 332 aaKnown RBP15.98■□□□□ 0.15
VRK3-212ENST00000596814 CHRNA1P02708 482 aa15.98■□□□□ 0.15
VRK3-212ENST00000596814 COL6A1P12109 1028 aa15.98■□□□□ 0.15
VRK3-212ENST00000596814 ATN1P54259 1190 aaPredicted RBP15.98■□□□□ 0.15
VRK3-212ENST00000596814 NCBP1Q09161 790 aaKnown RBP15.98■□□□□ 0.15
VRK3-212ENST00000596814 SNRNP35Q16560 246 aaKnown RBP15.98■□□□□ 0.15
VRK3-212ENST00000596814 EEF1DP3Q658K8 133 aa15.98■□□□□ 0.15
VRK3-212ENST00000596814 ZBTB33Q86T24 672 aa15.98■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms