RNA–Protein interactions for RNA: ENST00000596104.5

LIG1-209, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 531 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-209ENST00000596104 RNF149Q8NC42 400 aa11.14□□□□□ -0.63
LIG1-209ENST00000596104 CNNM3Q8NE01 707 aa11.14□□□□□ -0.63
LIG1-209ENST00000596104 ZNF707Q96C28 371 aaPredicted RBP11.14□□□□□ -0.63
LIG1-209ENST00000596104 FAM20AQ96MK3 541 aa11.14□□□□□ -0.63
LIG1-209ENST00000596104 FAM193BQ96PV7 902 aaPredicted RBP11.14□□□□□ -0.63
LIG1-209ENST00000596104 MYADMQ96S97 322 aa11.14□□□□□ -0.63
LIG1-209ENST00000596104 EIF2AQ9BY44 585 aaKnown RBP11.14□□□□□ -0.63
LIG1-209ENST00000596104 RNF39Q9H2S5 420 aa11.14□□□□□ -0.63
LIG1-209ENST00000596104 UBN1Q9NPG3 1134 aa11.14□□□□□ -0.63
LIG1-209ENST00000596104 BMP2KQ9NSY1 1161 aaPredicted RBP11.14□□□□□ -0.63
LIG1-209ENST00000596104 EPS15L1Q9UBC2 864 aa11.14□□□□□ -0.63
LIG1-209ENST00000596104 WNT16Q9UBV4 365 aa11.14□□□□□ -0.63
LIG1-209ENST00000596104 SSX2IPQ9Y2D8 614 aa11.14□□□□□ -0.63
LIG1-209ENST00000596104 IPPQ9Y573 584 aa11.14□□□□□ -0.63
LIG1-209ENST00000596104 ARL5CA6NH57 179 aa11.13□□□□□ -0.63
LIG1-209ENST00000596104 GAS2O43903 313 aaKnown RBP11.13□□□□□ -0.63
LIG1-209ENST00000596104 TSPAN1O60635 241 aa11.13□□□□□ -0.63
LIG1-209ENST00000596104 GLUD1P00367 558 aa11.13□□□□□ -0.63
LIG1-209ENST00000596104 CFHP08603 1231 aa11.13□□□□□ -0.63
LIG1-209ENST00000596104 ITGA4P13612 1032 aa11.13□□□□□ -0.63
LIG1-209ENST00000596104 MLH1P40692 756 aa11.13□□□□□ -0.63
LIG1-209ENST00000596104 OR1G1P47890 313 aa11.13□□□□□ -0.63
LIG1-209ENST00000596104 GLUD2P49448 558 aa11.13□□□□□ -0.63
LIG1-209ENST00000596104 DSG1Q02413 1049 aa11.13□□□□□ -0.63
LIG1-209ENST00000596104 EMC2Q15006 297 aa11.13□□□□□ -0.63
LIG1-209ENST00000596104 EPHA7Q15375 998 aa11.13□□□□□ -0.63
LIG1-209ENST00000596104 PPP4R3AQ6IN85 833 aa11.13□□□□□ -0.63
LIG1-209ENST00000596104 POTEGQ6S5H5 508 aa11.13□□□□□ -0.63
LIG1-209ENST00000596104 RUFY3Q7L099 469 aa11.13□□□□□ -0.63
LIG1-209ENST00000596104 ERMP1Q7Z2K6 904 aa11.13□□□□□ -0.63
LIG1-209ENST00000596104 SLC44A3Q8N4M1 653 aa11.13□□□□□ -0.63
LIG1-209ENST00000596104 HAS1Q92839 578 aa11.13□□□□□ -0.63
LIG1-209ENST00000596104 ZNF274Q96GC6 653 aaPredicted RBP11.13□□□□□ -0.63
LIG1-209ENST00000596104 GAD1Q99259 594 aa11.13□□□□□ -0.63
LIG1-209ENST00000596104 LXNQ9BS40 222 aa11.13□□□□□ -0.63
LIG1-209ENST00000596104 ZSWIM6Q9HCJ5 1215 aa11.13□□□□□ -0.63
LIG1-209ENST00000596104 XPNPEP1Q9NQW7 623 aa11.13□□□□□ -0.63
LIG1-209ENST00000596104 CHST7Q9NS84 486 aa11.13□□□□□ -0.63
LIG1-209ENST00000596104 MIOSQ9NXC5 875 aa11.13□□□□□ -0.63
LIG1-209ENST00000596104 RGL1Q9NZL6 768 aa11.13□□□□□ -0.63
LIG1-209ENST00000596104 KCNJ14Q9UNX9 436 aa11.13□□□□□ -0.63
LIG1-209ENST00000596104 HES2Q9Y543 173 aa11.13□□□□□ -0.63
LIG1-209ENST00000596104 CPLX1O14810 134 aa11.12□□□□□ -0.63
LIG1-209ENST00000596104 ZBTB39O15060 712 aa11.12□□□□□ -0.63
LIG1-209ENST00000596104 TBX3O15119 743 aa11.12□□□□□ -0.63
LIG1-209ENST00000596104 ASAP2O43150 1006 aa11.12□□□□□ -0.63
LIG1-209ENST00000596104 C1RP00736 705 aa11.12□□□□□ -0.63
LIG1-209ENST00000596104 MYBP10242 640 aa11.12□□□□□ -0.63
LIG1-209ENST00000596104 SRFP11831 508 aa11.12□□□□□ -0.63
LIG1-209ENST00000596104 GCFC2P16383 781 aaKnown RBP11.12□□□□□ -0.63
LIG1-209ENST00000596104 AXLP30530 894 aa11.12□□□□□ -0.63
LIG1-209ENST00000596104 YWHABP31946 246 aaKnown RBP11.12□□□□□ -0.63
LIG1-209ENST00000596104 GBP2P32456 591 aaPredicted RBP11.12□□□□□ -0.63
LIG1-209ENST00000596104 ID4P47928 161 aa11.12□□□□□ -0.63
LIG1-209ENST00000596104 SCNN1GP51170 649 aa11.12□□□□□ -0.63
LIG1-209ENST00000596104 PTENP60484 403 aa11.12□□□□□ -0.63
LIG1-209ENST00000596104 SPIRE1Q08AE8 756 aa11.12□□□□□ -0.63
LIG1-209ENST00000596104 PCBP1Q15365 356 aaKnown RBP eCLIP11.12□□□□□ -0.63
LIG1-209ENST00000596104 AMHR2Q16671 573 aa11.12□□□□□ -0.63
LIG1-209ENST00000596104 NOTUMQ6P988 496 aa11.12□□□□□ -0.63
LIG1-209ENST00000596104 LILRA6Q6PI73 481 aa11.12□□□□□ -0.63
LIG1-209ENST00000596104 NEK8Q86SG6 692 aa11.12□□□□□ -0.63
LIG1-209ENST00000596104 IFNLR1Q8IU57 520 aaPredicted RBP11.12□□□□□ -0.63
LIG1-209ENST00000596104 GPR65Q8IYL9 337 aa11.12□□□□□ -0.63
LIG1-209ENST00000596104 GSTCDQ8NEC7 633 aa11.12□□□□□ -0.63
LIG1-209ENST00000596104 HDAC7Q8WUI4 952 aa11.12□□□□□ -0.63
LIG1-209ENST00000596104 TCP11Q8WWU5 503 aa11.12□□□□□ -0.63
LIG1-209ENST00000596104 SMG7Q92540 1137 aaKnown RBP11.12□□□□□ -0.63
LIG1-209ENST00000596104 STAMQ92783 540 aa11.12□□□□□ -0.63
LIG1-209ENST00000596104 NXPE3Q969Y0 559 aa11.12□□□□□ -0.63
LIG1-209ENST00000596104 CCDC51Q96ER9 411 aa11.12□□□□□ -0.63
LIG1-209ENST00000596104 ZFP42Q96MM3 310 aa11.12□□□□□ -0.63
LIG1-209ENST00000596104 LARP6Q9BRS8 491 aaKnown RBP11.12□□□□□ -0.63
LIG1-209ENST00000596104 PHF20Q9BVI0 1012 aa11.12□□□□□ -0.63
LIG1-209ENST00000596104 CSRNP2Q9H175 543 aa11.12□□□□□ -0.63
LIG1-209ENST00000596104 DPP7Q9UHL4 492 aa11.12□□□□□ -0.63
LIG1-209ENST00000596104 VPS13AQ96RL7 3174 aa11.12□□□□□ -0.63
LIG1-209ENST00000596104 WDR81Q562E7 1941 aa11.11□□□□□ -0.63
LIG1-209ENST00000596104 CCDC194A0A1B0GVG4 234 aa11.11□□□□□ -0.63
LIG1-209ENST00000596104 ANHXE9PGG2 379 aa11.11□□□□□ -0.63
LIG1-209ENST00000596104 ERLIN2O94905 339 aa11.11□□□□□ -0.63
LIG1-209ENST00000596104 SPATA31D3P0C874 917 aa11.11□□□□□ -0.63
LIG1-209ENST00000596104 POU5F1BQ06416 359 aa11.11□□□□□ -0.63
LIG1-209ENST00000596104 XKR9Q5GH70 373 aa11.11□□□□□ -0.63
LIG1-209ENST00000596104 PHLDB3Q6NSJ2 640 aa11.11□□□□□ -0.63
LIG1-209ENST00000596104 ELMSAN1Q6PJG2 1045 aa11.11□□□□□ -0.63
LIG1-209ENST00000596104 SPATA31D4Q6ZUB0 917 aa11.11□□□□□ -0.63
LIG1-209ENST00000596104 OTUD6AQ7L8S5 288 aa11.11□□□□□ -0.63
LIG1-209ENST00000596104 DYDC2Q96IM9 177 aa11.11□□□□□ -0.63
LIG1-209ENST00000596104 CPB2Q96IY4 423 aa11.11□□□□□ -0.63
LIG1-209ENST00000596104 B3GALT6Q96L58 329 aa11.11□□□□□ -0.63
LIG1-209ENST00000596104 MTRQ99707 1265 aa11.11□□□□□ -0.63
LIG1-209ENST00000596104 GPR62Q9BZJ7 368 aa11.11□□□□□ -0.63
LIG1-209ENST00000596104 NT5C3AQ9H0P0 336 aa11.11□□□□□ -0.63
LIG1-209ENST00000596104 SLKQ9H2G2 1235 aaPredicted RBP11.11□□□□□ -0.63
LIG1-209ENST00000596104 SEMA4AQ9H3S1 761 aa11.11□□□□□ -0.63
LIG1-209ENST00000596104 NXF3Q9H4D5 531 aaKnown RBP11.11□□□□□ -0.63
LIG1-209ENST00000596104 PLEKHA4Q9H4M7 779 aa11.11□□□□□ -0.63
LIG1-209ENST00000596104 ZSWIM4Q9H7M6 989 aa11.11□□□□□ -0.63
LIG1-209ENST00000596104 TBC1D17Q9HA65 648 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms