RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 TAS1R1Q7RTX1 841 aa13.9□□□□□ -0.18
UPF1-203ENST00000594504 URGCPQ8TCY9 931 aa13.9□□□□□ -0.18
UPF1-203ENST00000594504 FAM193BQ96PV7 902 aaPredicted RBP13.9□□□□□ -0.18
UPF1-203ENST00000594504 MTRQ99707 1265 aa13.9□□□□□ -0.18
UPF1-203ENST00000594504 EIF2AK1Q9BQI3 630 aaKnown RBP13.9□□□□□ -0.18
UPF1-203ENST00000594504 ZSWIM4Q9H7M6 989 aa13.9□□□□□ -0.18
UPF1-203ENST00000594504 LIMD1Q9UGP4 676 aa13.9□□□□□ -0.18
UPF1-203ENST00000594504 DBR1Q9UK59 544 aaKnown RBP13.9□□□□□ -0.18
UPF1-203ENST00000594504 NR2E1Q9Y466 385 aa13.9□□□□□ -0.18
UPF1-203ENST00000594504 HES2Q9Y543 173 aa13.9□□□□□ -0.18
UPF1-203ENST00000594504 IRAK3Q9Y616 596 aa13.9□□□□□ -0.18
UPF1-203ENST00000594504 ARID2Q68CP9 1835 aa13.9□□□□□ -0.18
UPF1-203ENST00000594504 C2CD2LO14523 706 aa13.89□□□□□ -0.19
UPF1-203ENST00000594504 ASAP2O43150 1006 aa13.89□□□□□ -0.19
UPF1-203ENST00000594504 BRD1O95696 1058 aa13.89□□□□□ -0.19
UPF1-203ENST00000594504 ITGA4P13612 1032 aa13.89□□□□□ -0.19
UPF1-203ENST00000594504 NCLP19338 710 aaKnown RBP13.89□□□□□ -0.19
UPF1-203ENST00000594504 PDCP20941 246 aa13.89□□□□□ -0.19
UPF1-203ENST00000594504 KLRC2P26717 231 aa13.89□□□□□ -0.19
UPF1-203ENST00000594504 MTHFRP42898 656 aa13.89□□□□□ -0.19
UPF1-203ENST00000594504 TRAPPC10P48553 1259 aa13.89□□□□□ -0.19
UPF1-203ENST00000594504 ATAT1Q5SQI0 421 aa13.89□□□□□ -0.19
UPF1-203ENST00000594504 SLFN12Q8IYM2 578 aa13.89□□□□□ -0.19
UPF1-203ENST00000594504 ASAP3Q8TDY4 903 aa13.89□□□□□ -0.19
UPF1-203ENST00000594504 TCP11Q8WWU5 503 aa13.89□□□□□ -0.19
UPF1-203ENST00000594504 RIPOR3Q96MK2 946 aa13.89□□□□□ -0.19
UPF1-203ENST00000594504 APOL6Q9BWW8 343 aa13.89□□□□□ -0.19
UPF1-203ENST00000594504 FAM86C1Q9NVL1 165 aa13.89□□□□□ -0.19
UPF1-203ENST00000594504 IPPQ9Y573 584 aa13.89□□□□□ -0.19
UPF1-203ENST00000594504 ZNF318Q5VUA4 2279 aa13.88□□□□□ -0.19
UPF1-203ENST00000594504 F8W810 466 aa13.88□□□□□ -0.19
UPF1-203ENST00000594504 TSPAN1O60635 241 aa13.88□□□□□ -0.19
UPF1-203ENST00000594504 LILRB3O75022 631 aa13.88□□□□□ -0.19
UPF1-203ENST00000594504 CNPP09543 421 aaKnown RBP13.88□□□□□ -0.19
UPF1-203ENST00000594504 TXKP42681 527 aa13.88□□□□□ -0.19
UPF1-203ENST00000594504 PTENP60484 403 aa13.88□□□□□ -0.19
UPF1-203ENST00000594504 ORC2Q13416 577 aaPredicted RBP13.88□□□□□ -0.19
UPF1-203ENST00000594504 GIT2Q14161 759 aa13.88□□□□□ -0.19
UPF1-203ENST00000594504 MCTP1Q6DN14 999 aa13.88□□□□□ -0.19
UPF1-203ENST00000594504 KIAA1841Q6NSI8 718 aa13.88□□□□□ -0.19
UPF1-203ENST00000594504 CABP7Q86V35 215 aa13.88□□□□□ -0.19
UPF1-203ENST00000594504 CDR2LQ86X02 465 aaPredicted RBP13.88□□□□□ -0.19
UPF1-203ENST00000594504 EXOC8Q8IYI6 725 aa13.88□□□□□ -0.19
UPF1-203ENST00000594504 NECTIN4Q96NY8 510 aa13.88□□□□□ -0.19
UPF1-203ENST00000594504 GAD1Q99259 594 aa13.88□□□□□ -0.19
UPF1-203ENST00000594504 HSD17B14Q9BPX1 270 aa13.88□□□□□ -0.19
UPF1-203ENST00000594504 TMEM175Q9BSA9 504 aa13.88□□□□□ -0.19
UPF1-203ENST00000594504 TTC12Q9H892 705 aaPredicted RBP13.88□□□□□ -0.19
UPF1-203ENST00000594504 MARCH5Q9NX47 278 aa13.88□□□□□ -0.19
UPF1-203ENST00000594504 KANSL3Q9P2N6 904 aa13.88□□□□□ -0.19
UPF1-203ENST00000594504 NOL7Q9UMY1 257 aaKnown RBP13.88□□□□□ -0.19
UPF1-203ENST00000594504 PCDHA12Q9UN75 941 aa13.88□□□□□ -0.19
UPF1-203ENST00000594504 SORCS3Q9UPU3 1222 aa13.88□□□□□ -0.19
UPF1-203ENST00000594504 PRG3Q9Y2Y8 225 aaPredicted RBP13.88□□□□□ -0.19
UPF1-203ENST00000594504 PPME1Q9Y570 386 aa13.88□□□□□ -0.19
UPF1-203ENST00000594504 INO80B-WBP1J3KQ70 363 aa13.87□□□□□ -0.19
UPF1-203ENST00000594504 NEMFO60524 1076 aa13.87□□□□□ -0.19
UPF1-203ENST00000594504 ERLIN2O94905 339 aa13.87□□□□□ -0.19
UPF1-203ENST00000594504 ATP2B1P20020 1258 aa13.87□□□□□ -0.19
UPF1-203ENST00000594504 MLH1P40692 756 aa13.87□□□□□ -0.19
UPF1-203ENST00000594504 OR1G1P47890 313 aa13.87□□□□□ -0.19
UPF1-203ENST00000594504 CLCN4P51793 760 aa13.87□□□□□ -0.19
UPF1-203ENST00000594504 PTPN5P54829 565 aa13.87□□□□□ -0.19
UPF1-203ENST00000594504 CAPSQ13938 189 aa13.87□□□□□ -0.19
UPF1-203ENST00000594504 CALCRLQ16602 461 aa13.87□□□□□ -0.19
UPF1-203ENST00000594504 MAEAQ7L5Y9 396 aa13.87□□□□□ -0.19
UPF1-203ENST00000594504 COLGALT2Q8IYK4 626 aa13.87□□□□□ -0.19
UPF1-203ENST00000594504 PIGOQ8TEQ8 1089 aa13.87□□□□□ -0.19
UPF1-203ENST00000594504 RABGGTAQ92696 567 aa13.87□□□□□ -0.19
UPF1-203ENST00000594504 ZFP42Q96MM3 310 aa13.87□□□□□ -0.19
UPF1-203ENST00000594504 DZANK1Q9NVP4 752 aa13.87□□□□□ -0.19
UPF1-203ENST00000594504 CNTNAP2Q9UHC6 1331 aa13.87□□□□□ -0.19
UPF1-203ENST00000594504 C2orf16Q68DN1 1984 aa13.86□□□□□ -0.19
UPF1-203ENST00000594504 ARL5CA6NH57 179 aa13.86□□□□□ -0.19
UPF1-203ENST00000594504 SPDYE4A6NLX3 237 aa13.86□□□□□ -0.19
UPF1-203ENST00000594504 B4GALT5O43286 388 aa13.86□□□□□ -0.19
UPF1-203ENST00000594504 GAS2O43903 313 aaKnown RBP13.86□□□□□ -0.19
UPF1-203ENST00000594504 ARF4P18085 180 aaPredicted RBP13.86□□□□□ -0.19
UPF1-203ENST00000594504 GLRA2P23416 452 aa13.86□□□□□ -0.19
UPF1-203ENST00000594504 AKAP5P24588 427 aa13.86□□□□□ -0.19
UPF1-203ENST00000594504 MCM7P33993 719 aa13.86□□□□□ -0.19
UPF1-203ENST00000594504 ARL2P36404 184 aa13.86□□□□□ -0.19
UPF1-203ENST00000594504 SCNN1GP51170 649 aa13.86□□□□□ -0.19
UPF1-203ENST00000594504 MBTD1Q05BQ5 628 aa13.86□□□□□ -0.19
UPF1-203ENST00000594504 MTMR3Q13615 1198 aa13.86□□□□□ -0.19
UPF1-203ENST00000594504 AMHR2Q16671 573 aa13.86□□□□□ -0.19
UPF1-203ENST00000594504 TTC38Q5R3I4 469 aa13.86□□□□□ -0.19
UPF1-203ENST00000594504 GPR149Q86SP6 731 aa13.86□□□□□ -0.19
UPF1-203ENST00000594504 TDRD5Q8NAT2 981 aaKnown RBP13.86□□□□□ -0.19
UPF1-203ENST00000594504 CNNM3Q8NE01 707 aa13.86□□□□□ -0.19
UPF1-203ENST00000594504 RSPH1Q8WYR4 309 aa13.86□□□□□ -0.19
UPF1-203ENST00000594504 EMILIN2Q9BXX0 1053 aa13.86□□□□□ -0.19
UPF1-203ENST00000594504 CSRNP2Q9H175 543 aa13.86□□□□□ -0.19
UPF1-203ENST00000594504 TMEM60Q9H2L4 133 aa13.86□□□□□ -0.19
UPF1-203ENST00000594504 GPRC5CQ9NQ84 441 aa13.86□□□□□ -0.19
UPF1-203ENST00000594504 MRPL17Q9NRX2 175 aaKnown RBP13.86□□□□□ -0.19
UPF1-203ENST00000594504 TDRD15B5MCY1 1934 aaKnown RBP13.86□□□□□ -0.19
UPF1-203ENST00000594504 PLXNA3P51805 1871 aa13.85□□□□□ -0.19
UPF1-203ENST00000594504 POTEMA6NI47 508 aa13.85□□□□□ -0.19
UPF1-203ENST00000594504 H0Y858 1186 aa13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms