RNA–Protein interactions for RNA: ENST00000590559.2

CLIP3-204, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 4

Gene CLIP3, Length 549 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-204ENST00000590559 TAS1R1Q7RTX1 841 aa13.1□□□□□ -0.31
CLIP3-204ENST00000590559 CABP7Q86V35 215 aa13.1□□□□□ -0.31
CLIP3-204ENST00000590559 TDRD5Q8NAT2 981 aaKnown RBP13.1□□□□□ -0.31
CLIP3-204ENST00000590559 RNF149Q8NC42 400 aa13.1□□□□□ -0.31
CLIP3-204ENST00000590559 CNNM3Q8NE01 707 aa13.1□□□□□ -0.31
CLIP3-204ENST00000590559 GSTCDQ8NEC7 633 aa13.1□□□□□ -0.31
CLIP3-204ENST00000590559 CMASQ8NFW8 434 aaPredicted RBP13.1□□□□□ -0.31
CLIP3-204ENST00000590559 EIF2AQ9BY44 585 aaKnown RBP13.1□□□□□ -0.31
CLIP3-204ENST00000590559 NFKBIZQ9BYH8 718 aa13.1□□□□□ -0.31
CLIP3-204ENST00000590559 SLKQ9H2G2 1235 aaPredicted RBP13.1□□□□□ -0.31
CLIP3-204ENST00000590559 UBN1Q9NPG3 1134 aa13.1□□□□□ -0.31
CLIP3-204ENST00000590559 MIOSQ9NXC5 875 aa13.1□□□□□ -0.31
CLIP3-204ENST00000590559 LIMD1Q9UGP4 676 aa13.1□□□□□ -0.31
CLIP3-204ENST00000590559 FAN1Q9Y2M0 1017 aa13.1□□□□□ -0.31
CLIP3-204ENST00000590559 IPPQ9Y573 584 aa13.1□□□□□ -0.31
CLIP3-204ENST00000590559 SPTBN4Q9H254 2564 aa13.09□□□□□ -0.31
CLIP3-204ENST00000590559 ARL5CA6NH57 179 aa13.09□□□□□ -0.31
CLIP3-204ENST00000590559 ST18O60284 1047 aa13.09□□□□□ -0.31
CLIP3-204ENST00000590559 N4BP1O75113 896 aaKnown RBP13.09□□□□□ -0.31
CLIP3-204ENST00000590559 POMCP01189 267 aa13.09□□□□□ -0.31
CLIP3-204ENST00000590559 CA8P35219 290 aa13.09□□□□□ -0.31
CLIP3-204ENST00000590559 ARL2P36404 184 aa13.09□□□□□ -0.31
CLIP3-204ENST00000590559 NR5A1Q13285 461 aa13.09□□□□□ -0.31
CLIP3-204ENST00000590559 CTTNQ14247 550 aaKnown RBP13.09□□□□□ -0.31
CLIP3-204ENST00000590559 MXD4Q14582 209 aaPredicted RBP13.09□□□□□ -0.31
CLIP3-204ENST00000590559 XKR9Q5GH70 373 aa13.09□□□□□ -0.31
CLIP3-204ENST00000590559 ZBTB33Q86T24 672 aa13.09□□□□□ -0.31
CLIP3-204ENST00000590559 SLFN12Q8IYM2 578 aa13.09□□□□□ -0.31
CLIP3-204ENST00000590559 CCDC51Q96ER9 411 aa13.09□□□□□ -0.31
CLIP3-204ENST00000590559 RPS6KC1Q96S38 1066 aa13.09□□□□□ -0.31
CLIP3-204ENST00000590559 MTRQ99707 1265 aa13.09□□□□□ -0.31
CLIP3-204ENST00000590559 HERC2P3Q9BVR0 1158 aa13.09□□□□□ -0.31
CLIP3-204ENST00000590559 EMILIN2Q9BXX0 1053 aa13.09□□□□□ -0.31
CLIP3-204ENST00000590559 IRF2BPLQ9H1B7 796 aa13.09□□□□□ -0.31
CLIP3-204ENST00000590559 RXFP1Q9HBX9 757 aa13.09□□□□□ -0.31
CLIP3-204ENST00000590559 CHST7Q9NS84 486 aa13.09□□□□□ -0.31
CLIP3-204ENST00000590559 FAM86C1Q9NVL1 165 aa13.09□□□□□ -0.31
CLIP3-204ENST00000590559 DBR1Q9UK59 544 aaKnown RBP13.09□□□□□ -0.31
CLIP3-204ENST00000590559 DNAH14Q0VDD8 3507 aa13.09□□□□□ -0.31
CLIP3-204ENST00000590559 WNT7AO00755 349 aa13.08□□□□□ -0.32
CLIP3-204ENST00000590559 C1RP00736 705 aa13.08□□□□□ -0.32
CLIP3-204ENST00000590559 ITGA4P13612 1032 aa13.08□□□□□ -0.32
CLIP3-204ENST00000590559 XBP1P17861 261 aa13.08□□□□□ -0.32
CLIP3-204ENST00000590559 KLRC2P26717 231 aa13.08□□□□□ -0.32
CLIP3-204ENST00000590559 CLCN5P51795 746 aa13.08□□□□□ -0.32
CLIP3-204ENST00000590559 CYP4A11Q02928 519 aa13.08□□□□□ -0.32
CLIP3-204ENST00000590559 MBTD1Q05BQ5 628 aa13.08□□□□□ -0.32
CLIP3-204ENST00000590559 CAPSQ13938 189 aa13.08□□□□□ -0.32
CLIP3-204ENST00000590559 ASTLQ6HA08 431 aaPredicted RBP13.08□□□□□ -0.32
CLIP3-204ENST00000590559 NCAPH2Q6IBW4 605 aa13.08□□□□□ -0.32
CLIP3-204ENST00000590559 MTMR9Q96QG7 549 aa13.08□□□□□ -0.32
CLIP3-204ENST00000590559 EIF2AK1Q9BQI3 630 aaKnown RBP13.08□□□□□ -0.32
CLIP3-204ENST00000590559 CSRNP2Q9H175 543 aa13.08□□□□□ -0.32
CLIP3-204ENST00000590559 MRPL17Q9NRX2 175 aaKnown RBP13.08□□□□□ -0.32
CLIP3-204ENST00000590559 BMP2KQ9NSY1 1161 aaPredicted RBP13.08□□□□□ -0.32
CLIP3-204ENST00000590559 ANKEF1Q9NU02 776 aa13.08□□□□□ -0.32
CLIP3-204ENST00000590559 DOCK6Q96HP0 2047 aa13.08□□□□□ -0.32
CLIP3-204ENST00000590559 ZMYM2Q9UBW7 1377 aa13.07□□□□□ -0.32
CLIP3-204ENST00000590559 F8W810 466 aa13.07□□□□□ -0.32
CLIP3-204ENST00000590559 H0Y858 1186 aa13.07□□□□□ -0.32
CLIP3-204ENST00000590559 TEX28O15482 410 aa13.07□□□□□ -0.32
CLIP3-204ENST00000590559 SSBP05455 408 aaKnown RBP eCLIP13.07□□□□□ -0.32
CLIP3-204ENST00000590559 NPR3P17342 541 aa13.07□□□□□ -0.32
CLIP3-204ENST00000590559 ARF4P18085 180 aaPredicted RBP13.07□□□□□ -0.32
CLIP3-204ENST00000590559 NBL1P41271 181 aa13.07□□□□□ -0.32
CLIP3-204ENST00000590559 ANAPC15P60006 121 aa13.07□□□□□ -0.32
CLIP3-204ENST00000590559 DSG1Q02413 1049 aa13.07□□□□□ -0.32
CLIP3-204ENST00000590559 CWF19L1Q69YN2 538 aaKnown RBP13.07□□□□□ -0.32
CLIP3-204ENST00000590559 NOTUMQ6P988 496 aa13.07□□□□□ -0.32
CLIP3-204ENST00000590559 CYP26C1Q6V0L0 522 aa13.07□□□□□ -0.32
CLIP3-204ENST00000590559 CCDC149Q6ZUS6 474 aa13.07□□□□□ -0.32
CLIP3-204ENST00000590559 OTOP3Q7RTS5 596 aa13.07□□□□□ -0.32
CLIP3-204ENST00000590559 TPH2Q8IWU9 490 aa13.07□□□□□ -0.32
CLIP3-204ENST00000590559 GPR65Q8IYL9 337 aa13.07□□□□□ -0.32
CLIP3-204ENST00000590559 TMEM87AQ8NBN3 555 aa13.07□□□□□ -0.32
CLIP3-204ENST00000590559 ASAP3Q8TDY4 903 aa13.07□□□□□ -0.32
CLIP3-204ENST00000590559 CPB2Q96IY4 423 aa13.07□□□□□ -0.32
CLIP3-204ENST00000590559 ZFP42Q96MM3 310 aa13.07□□□□□ -0.32
CLIP3-204ENST00000590559 FAM193BQ96PV7 902 aaPredicted RBP13.07□□□□□ -0.32
CLIP3-204ENST00000590559 GAD1Q99259 594 aa13.07□□□□□ -0.32
CLIP3-204ENST00000590559 ORC3Q9UBD5 711 aaPredicted RBP13.07□□□□□ -0.32
CLIP3-204ENST00000590559 PCDHA12Q9UN75 941 aa13.07□□□□□ -0.32
CLIP3-204ENST00000590559 HES2Q9Y543 173 aa13.07□□□□□ -0.32
CLIP3-204ENST00000590559 VWA8A3KMH1 1905 aa13.07□□□□□ -0.32
CLIP3-204ENST00000590559 A0A1B0GUA9 196 aa13.06□□□□□ -0.32
CLIP3-204ENST00000590559 GFRA3O60609 400 aa13.06□□□□□ -0.32
CLIP3-204ENST00000590559 DGAT1O75907 488 aa13.06□□□□□ -0.32
CLIP3-204ENST00000590559 ERLIN2O94905 339 aa13.06□□□□□ -0.32
CLIP3-204ENST00000590559 BAG4O95429 457 aaKnown RBP13.06□□□□□ -0.32
CLIP3-204ENST00000590559 LARGE1O95461 756 aa13.06□□□□□ -0.32
CLIP3-204ENST00000590559 GLRA2P23416 452 aa13.06□□□□□ -0.32
CLIP3-204ENST00000590559 KRT2P35908 639 aa13.06□□□□□ -0.32
CLIP3-204ENST00000590559 MLH1P40692 756 aa13.06□□□□□ -0.32
CLIP3-204ENST00000590559 RARRES1P49788 294 aa13.06□□□□□ -0.32
CLIP3-204ENST00000590559 SCNN1GP51170 649 aa13.06□□□□□ -0.32
CLIP3-204ENST00000590559 AK2P54819 239 aa13.06□□□□□ -0.32
CLIP3-204ENST00000590559 TDGQ13569 410 aa13.06□□□□□ -0.32
CLIP3-204ENST00000590559 ME3Q16798 604 aa13.06□□□□□ -0.32
CLIP3-204ENST00000590559 HDAC7Q8WUI4 952 aa13.06□□□□□ -0.32
CLIP3-204ENST00000590559 WASF1Q92558 559 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms