RNA–Protein interactions for RNA: ENST00000586457.1

CLIP3-203, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 1 (best)

Gene CLIP3, Length 433 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-203ENST00000586457 ARID2Q68CP9 1835 aa11.99□□□□□ -0.49
CLIP3-203ENST00000586457 RALGAPA2Q2PPJ7 1873 aa11.99□□□□□ -0.49
CLIP3-203ENST00000586457 NLRC5Q86WI3 1866 aa11.98□□□□□ -0.49
CLIP3-203ENST00000586457 ARL5CA6NH57 179 aa11.98□□□□□ -0.49
CLIP3-203ENST00000586457 SFI1A8K8P3 1242 aa11.98□□□□□ -0.49
CLIP3-203ENST00000586457 NT5C1B-RDH14C9J2C7 533 aa11.98□□□□□ -0.49
CLIP3-203ENST00000586457 B4GALT5O43286 388 aa11.98□□□□□ -0.49
CLIP3-203ENST00000586457 FAM13AO94988 1023 aa11.98□□□□□ -0.49
CLIP3-203ENST00000586457 ZSCAN22P10073 491 aaPredicted RBP11.98□□□□□ -0.49
CLIP3-203ENST00000586457 ATF7P17544 494 aaPredicted RBP11.98□□□□□ -0.49
CLIP3-203ENST00000586457 AKAP5P24588 427 aa11.98□□□□□ -0.49
CLIP3-203ENST00000586457 GUCY2CP25092 1073 aa11.98□□□□□ -0.49
CLIP3-203ENST00000586457 DDIT3P35638 169 aa11.98□□□□□ -0.49
CLIP3-203ENST00000586457 NPTX2P47972 431 aa11.98□□□□□ -0.49
CLIP3-203ENST00000586457 PLCB3Q01970 1234 aa11.98□□□□□ -0.49
CLIP3-203ENST00000586457 TFF2Q03403 129 aa11.98□□□□□ -0.49
CLIP3-203ENST00000586457 SLC39A14Q15043 492 aa11.98□□□□□ -0.49
CLIP3-203ENST00000586457 KARSQ15046 597 aaKnown RBP11.98□□□□□ -0.49
CLIP3-203ENST00000586457 FAM187BQ17R55 369 aa11.98□□□□□ -0.49
CLIP3-203ENST00000586457 PUS10Q3MIT2 529 aaKnown RBP11.98□□□□□ -0.49
CLIP3-203ENST00000586457 DCAF4L1Q3SXM0 396 aa11.98□□□□□ -0.49
CLIP3-203ENST00000586457 FOXD4L6Q3SYB3 417 aaPredicted RBP11.98□□□□□ -0.49
CLIP3-203ENST00000586457 SPECC1Q5M775 1068 aa11.98□□□□□ -0.49
CLIP3-203ENST00000586457 UBXN11Q5T124 520 aa11.98□□□□□ -0.49
CLIP3-203ENST00000586457 ATF7IP2Q5U623 682 aa11.98□□□□□ -0.49
CLIP3-203ENST00000586457 FOXD4L3Q6VB84 417 aaPredicted RBP11.98□□□□□ -0.49
CLIP3-203ENST00000586457 PPP4R3CPQ6ZMV5 832 aa11.98□□□□□ -0.49
CLIP3-203ENST00000586457 CCDC73Q6ZRK6 1079 aa11.98□□□□□ -0.49
CLIP3-203ENST00000586457 C1orf186Q6ZWK4 172 aa11.98□□□□□ -0.49
CLIP3-203ENST00000586457 GPBP1Q86WP2 473 aa11.98□□□□□ -0.49
CLIP3-203ENST00000586457 CDR2LQ86X02 465 aaPredicted RBP11.98□□□□□ -0.49
CLIP3-203ENST00000586457 MYCT1Q8N699 235 aa11.98□□□□□ -0.49
CLIP3-203ENST00000586457 BICD1Q96G01 975 aa11.98□□□□□ -0.49
CLIP3-203ENST00000586457 PNMA5Q96PV4 448 aa11.98□□□□□ -0.49
CLIP3-203ENST00000586457 TCF25Q9BQ70 676 aa11.98□□□□□ -0.49
CLIP3-203ENST00000586457 RUSC1Q9BVN2 902 aa11.98□□□□□ -0.49
CLIP3-203ENST00000586457 MRPL4Q9BYD3 311 aaKnown RBP11.98□□□□□ -0.49
CLIP3-203ENST00000586457 UBE2ZQ9H832 354 aaPredicted RBP11.98□□□□□ -0.49
CLIP3-203ENST00000586457 HES2Q9Y543 173 aa11.98□□□□□ -0.49
CLIP3-203ENST00000586457 COL6A3P12111 3177 aa11.98□□□□□ -0.49
CLIP3-203ENST00000586457 SPTLC2O15270 562 aa11.97□□□□□ -0.49
CLIP3-203ENST00000586457 SLC16A4O15374 487 aa11.97□□□□□ -0.49
CLIP3-203ENST00000586457 CXCL14O95715 111 aa11.97□□□□□ -0.49
CLIP3-203ENST00000586457 PLS3P13797 630 aa11.97□□□□□ -0.49
CLIP3-203ENST00000586457 PLCG1P19174 1290 aa11.97□□□□□ -0.49
CLIP3-203ENST00000586457 ABCD1P33897 745 aa11.97□□□□□ -0.49
CLIP3-203ENST00000586457 PBX3P40426 434 aa11.97□□□□□ -0.49
CLIP3-203ENST00000586457 MLH1P40692 756 aa11.97□□□□□ -0.49
CLIP3-203ENST00000586457 OR1G1P47890 313 aa11.97□□□□□ -0.49
CLIP3-203ENST00000586457 NRIP1P48552 1158 aa11.97□□□□□ -0.49
CLIP3-203ENST00000586457 NDUFV1P49821 464 aa11.97□□□□□ -0.49
CLIP3-203ENST00000586457 YARSP54577 528 aaKnown RBP11.97□□□□□ -0.49
CLIP3-203ENST00000586457 SMC1AQ14683 1233 aaKnown RBP11.97□□□□□ -0.49
CLIP3-203ENST00000586457 PLPP4Q5VZY2 271 aa11.97□□□□□ -0.49
CLIP3-203ENST00000586457 AGMOQ6ZNB7 445 aa11.97□□□□□ -0.49
CLIP3-203ENST00000586457 SV2BQ7L1I2 683 aa11.97□□□□□ -0.49
CLIP3-203ENST00000586457 KCNK18Q7Z418 384 aa11.97□□□□□ -0.49
CLIP3-203ENST00000586457 SMG8Q8ND04 991 aaKnown RBP11.97□□□□□ -0.49
CLIP3-203ENST00000586457 BSNDQ8WZ55 320 aa11.97□□□□□ -0.49
CLIP3-203ENST00000586457 PABPC5Q96DU9 382 aaKnown RBP11.97□□□□□ -0.49
CLIP3-203ENST00000586457 USP28Q96RU2 1077 aa11.97□□□□□ -0.49
CLIP3-203ENST00000586457 GAD1Q99259 594 aa11.97□□□□□ -0.49
CLIP3-203ENST00000586457 KIFC3Q9BVG8 833 aa11.97□□□□□ -0.49
CLIP3-203ENST00000586457 COLEC11Q9BWP8 271 aa11.97□□□□□ -0.49
CLIP3-203ENST00000586457 PANK2Q9BZ23 570 aa11.97□□□□□ -0.49
CLIP3-203ENST00000586457 CCSER1Q9C0I3 900 aa11.97□□□□□ -0.49
CLIP3-203ENST00000586457 TMEM134Q9H6X4 195 aa11.97□□□□□ -0.49
CLIP3-203ENST00000586457 RNF19AQ9NV58 838 aa11.97□□□□□ -0.49
CLIP3-203ENST00000586457 KLK14Q9P0G3 267 aa11.97□□□□□ -0.49
CLIP3-203ENST00000586457 HCSTQ9UBK5 93 aa11.97□□□□□ -0.49
CLIP3-203ENST00000586457 ODF2LQ9ULJ1 636 aa11.97□□□□□ -0.49
CLIP3-203ENST00000586457 TRANK1O15050 2925 aa11.97□□□□□ -0.49
CLIP3-203ENST00000586457 CHD7Q9P2D1 2997 aa11.96□□□□□ -0.49
CLIP3-203ENST00000586457 SPDYE4A6NLX3 237 aa11.96□□□□□ -0.49
CLIP3-203ENST00000586457 MEIS3P2A8K0S8 358 aa11.96□□□□□ -0.49
CLIP3-203ENST00000586457 LINC00271P0C7V0 271 aa11.96□□□□□ -0.49
CLIP3-203ENST00000586457 SCP2P22307 547 aa11.96□□□□□ -0.49
CLIP3-203ENST00000586457 STAT6P42226 847 aa11.96□□□□□ -0.49
CLIP3-203ENST00000586457 SLC12A3P55017 1021 aa11.96□□□□□ -0.49
CLIP3-203ENST00000586457 GIT2Q14161 759 aa11.96□□□□□ -0.49
CLIP3-203ENST00000586457 MCM6Q14566 821 aa11.96□□□□□ -0.49
CLIP3-203ENST00000586457 PTPAQ15257 358 aa11.96□□□□□ -0.49
CLIP3-203ENST00000586457 AMHR2Q16671 573 aa11.96□□□□□ -0.49
CLIP3-203ENST00000586457 TMEM119Q4V9L6 283 aa11.96□□□□□ -0.49
CLIP3-203ENST00000586457 ATL3Q6DD88 541 aa11.96□□□□□ -0.49
CLIP3-203ENST00000586457 KIAA1841Q6NSI8 718 aa11.96□□□□□ -0.49
CLIP3-203ENST00000586457 SLC39A11Q8N1S5 342 aa11.96□□□□□ -0.49
CLIP3-203ENST00000586457 SPIRE2Q8WWL2 714 aa11.96□□□□□ -0.49
CLIP3-203ENST00000586457 LARP4BQ92615 738 aaKnown RBP11.96□□□□□ -0.49
CLIP3-203ENST00000586457 RAD54LQ92698 747 aa11.96□□□□□ -0.49
CLIP3-203ENST00000586457 EPSTI1Q96J88 318 aa11.96□□□□□ -0.49
CLIP3-203ENST00000586457 CLIC6Q96NY7 704 aa11.96□□□□□ -0.49
CLIP3-203ENST00000586457 CDCA3Q99618 268 aaPredicted RBP11.96□□□□□ -0.49
CLIP3-203ENST00000586457 TMEM175Q9BSA9 504 aa11.96□□□□□ -0.49
CLIP3-203ENST00000586457 CCDC94Q9BW85 323 aaPredicted RBP11.96□□□□□ -0.49
CLIP3-203ENST00000586457 LRRC27Q9C0I9 530 aa11.96□□□□□ -0.49
CLIP3-203ENST00000586457 NXF3Q9H4D5 531 aaKnown RBP11.96□□□□□ -0.49
CLIP3-203ENST00000586457 PDZD7Q9H5P4 517 aa11.96□□□□□ -0.49
CLIP3-203ENST00000586457 NRDE2Q9H7Z3 1164 aa11.96□□□□□ -0.49
CLIP3-203ENST00000586457 PARVGQ9HBI0 331 aa11.96□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms