RNA–Protein interactions for RNA: ENST00000586435.1

LIG3-209, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 588 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-209ENST00000586435 NCAPH2Q6IBW4 605 aa13.23□□□□□ -0.29
LIG3-209ENST00000586435 KANK3Q6NY19 840 aa13.23□□□□□ -0.29
LIG3-209ENST00000586435 NOTUMQ6P988 496 aa13.23□□□□□ -0.29
LIG3-209ENST00000586435 CYP26C1Q6V0L0 522 aa13.23□□□□□ -0.29
LIG3-209ENST00000586435 OTOP3Q7RTS5 596 aa13.23□□□□□ -0.29
LIG3-209ENST00000586435 COLGALT2Q8IYK4 626 aa13.23□□□□□ -0.29
LIG3-209ENST00000586435 TMEM105Q8N8V8 129 aa13.23□□□□□ -0.29
LIG3-209ENST00000586435 OXER1Q8TDS5 423 aa13.23□□□□□ -0.29
LIG3-209ENST00000586435 WASF1Q92558 559 aa13.23□□□□□ -0.29
LIG3-209ENST00000586435 DYDC2Q96IM9 177 aa13.23□□□□□ -0.29
LIG3-209ENST00000586435 NFKBIZQ9BYH8 718 aa13.23□□□□□ -0.29
LIG3-209ENST00000586435 SMOC2Q9H3U7 446 aa13.23□□□□□ -0.29
LIG3-209ENST00000586435 XPNPEP1Q9NQW7 623 aa13.23□□□□□ -0.29
LIG3-209ENST00000586435 FAM86C1Q9NVL1 165 aa13.23□□□□□ -0.29
LIG3-209ENST00000586435 LIMD1Q9UGP4 676 aa13.23□□□□□ -0.29
LIG3-209ENST00000586435 IPPQ9Y573 584 aa13.23□□□□□ -0.29
LIG3-209ENST00000586435 FAM186AA6NE01 2351 aa13.23□□□□□ -0.29
LIG3-209ENST00000586435 SPDYE4A6NLX3 237 aa13.22□□□□□ -0.29
LIG3-209ENST00000586435 MARCH6O60337 910 aa13.22□□□□□ -0.29
LIG3-209ENST00000586435 GFRA3O60609 400 aa13.22□□□□□ -0.29
LIG3-209ENST00000586435 DGAT1O75907 488 aa13.22□□□□□ -0.29
LIG3-209ENST00000586435 SLITRK3O94933 977 aa13.22□□□□□ -0.29
LIG3-209ENST00000586435 PAPLNO95428 1278 aa13.22□□□□□ -0.29
LIG3-209ENST00000586435 CTDNEP1O95476 244 aa13.22□□□□□ -0.29
LIG3-209ENST00000586435 C1RP00736 705 aa13.22□□□□□ -0.29
LIG3-209ENST00000586435 POMCP01189 267 aa13.22□□□□□ -0.29
LIG3-209ENST00000586435 ADH1AP07327 375 aa13.22□□□□□ -0.29
LIG3-209ENST00000586435 CLCN5P51795 746 aa13.22□□□□□ -0.29
LIG3-209ENST00000586435 CYP4A11Q02928 519 aa13.22□□□□□ -0.29
LIG3-209ENST00000586435 TFDP1Q14186 410 aa13.22□□□□□ -0.29
LIG3-209ENST00000586435 CTTNQ14247 550 aaKnown RBP13.22□□□□□ -0.29
LIG3-209ENST00000586435 EARS2Q5JPH6 523 aaKnown RBP13.22□□□□□ -0.29
LIG3-209ENST00000586435 ASTLQ6HA08 431 aaPredicted RBP13.22□□□□□ -0.29
LIG3-209ENST00000586435 FEZF2Q8TBJ5 459 aa13.22□□□□□ -0.29
LIG3-209ENST00000586435 ATOH1Q92858 354 aaPredicted RBP13.22□□□□□ -0.29
LIG3-209ENST00000586435 TNFRSF25Q93038 417 aa13.22□□□□□ -0.29
LIG3-209ENST00000586435 RPS6KC1Q96S38 1066 aa13.22□□□□□ -0.29
LIG3-209ENST00000586435 BMP2KQ9NSY1 1161 aaPredicted RBP13.22□□□□□ -0.29
LIG3-209ENST00000586435 GJB4Q9NTQ9 266 aa13.22□□□□□ -0.29
LIG3-209ENST00000586435 DPP7Q9UHL4 492 aa13.22□□□□□ -0.29
LIG3-209ENST00000586435 TPCN1Q9ULQ1 816 aa13.22□□□□□ -0.29
LIG3-209ENST00000586435 PTPRZ1P23471 2315 aaPredicted RBP13.22□□□□□ -0.29
LIG3-209ENST00000586435 RIF1Q5UIP0 2472 aaKnown RBP13.21□□□□□ -0.29
LIG3-209ENST00000586435 ARL5CA6NH57 179 aa13.21□□□□□ -0.29
LIG3-209ENST00000586435 H0Y858 1186 aa13.21□□□□□ -0.29
LIG3-209ENST00000586435 ZBTB39O15060 712 aa13.21□□□□□ -0.29
LIG3-209ENST00000586435 SSBP05455 408 aaKnown RBP eCLIP13.21□□□□□ -0.29
LIG3-209ENST00000586435 KRT2P35908 639 aa13.21□□□□□ -0.29
LIG3-209ENST00000586435 GLUD2P49448 558 aa13.21□□□□□ -0.29
LIG3-209ENST00000586435 ANAPC15P60006 121 aa13.21□□□□□ -0.29
LIG3-209ENST00000586435 MBTD1Q05BQ5 628 aa13.21□□□□□ -0.29
LIG3-209ENST00000586435 NCBP1Q09161 790 aaKnown RBP13.21□□□□□ -0.29
LIG3-209ENST00000586435 ANKRD1Q15327 319 aa13.21□□□□□ -0.29
LIG3-209ENST00000586435 AMHR2Q16671 573 aa13.21□□□□□ -0.29
LIG3-209ENST00000586435 ELMSAN1Q6PJG2 1045 aa13.21□□□□□ -0.29
LIG3-209ENST00000586435 TPH2Q8IWU9 490 aa13.21□□□□□ -0.29
LIG3-209ENST00000586435 GPR65Q8IYL9 337 aa13.21□□□□□ -0.29
LIG3-209ENST00000586435 HACE1Q8IYU2 909 aa13.21□□□□□ -0.29
LIG3-209ENST00000586435 HDAC7Q8WUI4 952 aa13.21□□□□□ -0.29
LIG3-209ENST00000586435 GAD1Q99259 594 aa13.21□□□□□ -0.29
LIG3-209ENST00000586435 HSD17B14Q9BPX1 270 aa13.21□□□□□ -0.29
LIG3-209ENST00000586435 EIF2AK1Q9BQI3 630 aaKnown RBP13.21□□□□□ -0.29
LIG3-209ENST00000586435 EIF2AQ9BY44 585 aaKnown RBP13.21□□□□□ -0.29
LIG3-209ENST00000586435 CSRNP2Q9H175 543 aa13.21□□□□□ -0.29
LIG3-209ENST00000586435 RXFP1Q9HBX9 757 aa13.21□□□□□ -0.29
LIG3-209ENST00000586435 BRMS1Q9HCU9 246 aa13.21□□□□□ -0.29
LIG3-209ENST00000586435 MAN1C1Q9NR34 630 aa13.21□□□□□ -0.29
LIG3-209ENST00000586435 ANKEF1Q9NU02 776 aa13.21□□□□□ -0.29
LIG3-209ENST00000586435 IGSF9Q9P2J2 1179 aa13.21□□□□□ -0.29
LIG3-209ENST00000586435 ORC3Q9UBD5 711 aaPredicted RBP13.21□□□□□ -0.29
LIG3-209ENST00000586435 DUSP12Q9UNI6 340 aa13.21□□□□□ -0.29
LIG3-209ENST00000586435 GIT1Q9Y2X7 761 aa13.21□□□□□ -0.29
LIG3-209ENST00000586435 PRG3Q9Y2Y8 225 aaPredicted RBP13.21□□□□□ -0.29
LIG3-209ENST00000586435 ZFHX2Q9C0A1 2572 aaPredicted RBP13.21□□□□□ -0.3
LIG3-209ENST00000586435 FAM205CA6NFA0 338 aa13.2□□□□□ -0.3
LIG3-209ENST00000586435 INO80B-WBP1J3KQ70 363 aa13.2□□□□□ -0.3
LIG3-209ENST00000586435 TEX28O15482 410 aa13.2□□□□□ -0.3
LIG3-209ENST00000586435 GLUD1P00367 558 aa13.2□□□□□ -0.3
LIG3-209ENST00000586435 FDPSP14324 419 aaKnown RBP13.2□□□□□ -0.3
LIG3-209ENST00000586435 ARL2P36404 184 aa13.2□□□□□ -0.3
LIG3-209ENST00000586435 MLH1P40692 756 aa13.2□□□□□ -0.3
LIG3-209ENST00000586435 NBL1P41271 181 aa13.2□□□□□ -0.3
LIG3-209ENST00000586435 OR1G1P47890 313 aa13.2□□□□□ -0.3
LIG3-209ENST00000586435 AK2P54819 239 aa13.2□□□□□ -0.3
LIG3-209ENST00000586435 DSG1Q02413 1049 aa13.2□□□□□ -0.3
LIG3-209ENST00000586435 NR5A1Q13285 461 aa13.2□□□□□ -0.3
LIG3-209ENST00000586435 TDGQ13569 410 aa13.2□□□□□ -0.3
LIG3-209ENST00000586435 CAPSQ13938 189 aa13.2□□□□□ -0.3
LIG3-209ENST00000586435 KIAA0319Q5VV43 1072 aa13.2□□□□□ -0.3
LIG3-209ENST00000586435 CWF19L1Q69YN2 538 aaKnown RBP13.2□□□□□ -0.3
LIG3-209ENST00000586435 RNF39Q9H2S5 420 aa13.2□□□□□ -0.3
LIG3-209ENST00000586435 MFSD1Q9H3U5 465 aa13.2□□□□□ -0.3
LIG3-209ENST00000586435 WDR6Q9NNW5 1121 aaKnown RBP13.2□□□□□ -0.3
LIG3-209ENST00000586435 CHST7Q9NS84 486 aa13.2□□□□□ -0.3
LIG3-209ENST00000586435 PCDHA12Q9UN75 941 aa13.2□□□□□ -0.3
LIG3-209ENST00000586435 C2CD2LO14523 706 aa13.19□□□□□ -0.3
LIG3-209ENST00000586435 NR1I2O75469 434 aa13.19□□□□□ -0.3
LIG3-209ENST00000586435 ARF4P18085 180 aaPredicted RBP13.19□□□□□ -0.3
LIG3-209ENST00000586435 AOC1P19801 751 aa13.19□□□□□ -0.3
LIG3-209ENST00000586435 RARRES1P49788 294 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms