RNA–Protein interactions for RNA: ENST00000584063.5

CDK5RAP3-231, Transcript of CDK5 regulatory subunit associated protein 3, human

TSL 1 (best)

Gene CDK5RAP3, Length 2,759 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK5RAP3-231	ENST00000584063	TMOD1	P28289	359 aa		12.51	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	BIRC3	Q13489	604 aa		12.51	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	SLC9C1	Q4G0N8	1177 aa		12.51	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	ANGEL2	Q5VTE6	544 aa	Known RBP	12.51	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	NOP9	Q86U38	636 aa	Known RBP	12.51	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	CPXCR1	Q8N123	301 aa		12.51	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	DDX47	Q9H0S4	455 aa	Known RBP	12.51	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	DDX56	Q9NY93	547 aa	Known RBP	12.51	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	RGL1	Q9NZL6	768 aa		12.51	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	PCDHA2	Q9Y5H9	948 aa		12.51	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063		A0A1W2PQJ5	194 aa		12.51	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	CLIC2	O15247	247 aa		12.51	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	MYB	P10242	640 aa		12.51	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	STAT2	P52630	851 aa		12.51	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	EIF2B5	Q13144	721 aa	Known RBP	12.51	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	SYDE2	Q5VT97	1194 aa		12.51	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	CATSPER3	Q86XQ3	398 aa		12.51	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	ZKSCAN4	Q969J2	545 aa	Predicted RBP	12.51	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	TSG101	Q99816	390 aa		12.51	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	CASS4	Q9NQ75	786 aa		12.51	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	HOMER2	Q9NSB8	354 aa		12.51	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	SMCHD1	A6NHR9	2005 aa		12.51	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	INMT	O95050	263 aa		12.5	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	ITGA4	P13612	1032 aa		12.5	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	INPP5B	P32019	993 aa		12.5	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	MAN1A1	P33908	653 aa		12.5	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	HOXD13	P35453	343 aa		12.5	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	CAP2	P40123	477 aa		12.5	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	USP4	Q13107	963 aa		12.5	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	ADAM9	Q13443	819 aa		12.5	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	TMED1	Q13445	227 aa		12.5	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	PDIA5	Q14554	519 aa		12.5	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	PPP4R3A	Q6IN85	833 aa		12.5	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	FBXO11	Q86XK2	927 aa		12.5	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	DCAF4	Q8WV16	495 aa		12.5	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	AMN	Q9BXJ7	453 aa		12.5	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	CELF4	Q9BZC1	486 aa	Known RBP	12.5	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	DPH5	Q9H2P9	285 aa		12.5	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	CHORDC1	Q9UHD1	332 aa	Predicted RBP	12.5	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	PLAA	Q9Y263	795 aa		12.5	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	SMIM23	A6NLE4	172 aa		12.5	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063		E7EVH7	732 aa		12.5	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	CHMP2A	O43633	222 aa		12.5	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	OPA1	O60313	960 aa		12.5	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	CYP1A2	P05177	515 aa		12.5	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	CASP4	P49662	377 aa		12.5	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	PTK2	Q05397	1052 aa		12.5	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	ASTE1	Q2TB18	679 aa	Predicted RBP	12.5	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	SFR1	Q86XK3	245 aa		12.5	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	PIGO	Q8TEQ8	1089 aa		12.5	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	NEUROG2	Q9H2A3	272 aa		12.5	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	SPON1	Q9HCB6	807 aa		12.5	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	CENPF	P49454	3210 aa		12.5	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	GRID2IP	A4D2P6	1211 aa		12.49	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	DDN	O94850	711 aa	Predicted RBP	12.49	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	MNAT1	P51948	309 aa		12.49	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	TAF11	Q15544	211 aa		12.49	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	ZNF713	Q8N859	430 aa	Predicted RBP	12.49	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	GSDMB	Q8TAX9	411 aa		12.49	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	SCLT1	Q96NL6	688 aa		12.49	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	RAB34	Q9BZG1	259 aa		12.49	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	ATRNL1	Q5VV63	1379 aa		12.49	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	DCDC2C	A8MYV0	355 aa		12.49	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	GOLGA8K	D6RF30	607 aa		12.49	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	EML1	O00423	815 aa		12.49	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	SHOX2	O60902	331 aa	Predicted RBP	12.49	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	HSD17B7	P56937	341 aa		12.49	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	ARHGAP4	P98171	946 aa		12.49	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	FKBP3	Q00688	224 aa	Known RBP	12.49	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	LRRC63	Q05C16	580 aa		12.49	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	KCNH2	Q12809	1159 aa		12.49	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	TNFAIP1	Q13829	316 aa		12.49	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	SMUG1	Q53HV7	270 aa		12.49	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	FIGN	Q5HY92	759 aa		12.49	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	IFT20	Q8IY31	132 aa		12.49	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	CHPF	Q8IZ52	775 aa		12.49	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	TRPM4	Q8TD43	1214 aa		12.49	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	FRS2	Q8WU20	508 aa		12.49	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	SPAG5	Q96R06	1193 aa		12.49	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	REEP2	Q9BRK0	252 aa		12.49	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	KCTD10	Q9H3F6	313 aa		12.49	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	EMILIN3	Q9NT22	766 aa		12.49	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	BARX2	Q9UMQ3	279 aa	Predicted RBP	12.49	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063		A0A087WUV0	522 aa	Predicted RBP	12.48	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063		A0A0B4J203	849 aa		12.48	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	SPDYE3	A6NKU9	549 aa		12.48	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	OPLAH	O14841	1288 aa		12.48	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	ASNS	P08243	561 aa		12.48	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	HNRNPH3	P31942	346 aa	Known RBP	12.48	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	ERVK-9	P63128	1117 aa		12.48	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	SPIRE1	Q08AE8	756 aa		12.48	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	SNX1	Q13596	522 aa		12.48	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	ODF2	Q5BJF6	829 aa		12.48	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	FIP1L1	Q6UN15	594 aa	Known RBP	12.48	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	UBLCP1	Q8WVY7	318 aa	Predicted RBP	12.48	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	UROC1	Q96N76	676 aa		12.48	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	RUSC1	Q9BVN2	902 aa		12.48	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	VPS33B	Q9H267	617 aa		12.48	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	KCNMB3	Q9NPA1	279 aa		12.48	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	AMACR	Q9UHK6	382 aa		12.48	□□□□□ -0.41

Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms